Wall clock time and date at job start Tue Mar 31 2020 06:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 N 1.46905 * 109.46898 * 119.99967 * 2 1 3 5 5 C 1.46900 * 110.99783 * 307.32454 * 4 2 1 6 6 C 1.50706 * 109.46956 * 287.35137 * 5 4 2 7 7 H 1.08004 * 119.99987 * 356.48509 * 6 5 4 8 8 C 1.37871 * 119.99977 * 176.49303 * 6 5 4 9 9 N 1.31520 * 120.00165 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00292 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46959 * 59.99618 * 10 8 6 12 12 H 1.48495 * 109.47477 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46759 * 299.99819 * 10 8 6 14 14 C 1.46900 * 110.99949 * 71.27811 * 4 2 1 15 15 C 1.50693 * 109.47252 * 75.21971 * 14 4 2 16 16 C 1.38250 * 119.97045 * 254.27851 * 15 14 4 17 17 C 1.38205 * 120.11615 * 180.02562 * 16 15 14 18 18 C 1.38238 * 120.11374 * 0.07453 * 17 16 15 19 19 C 1.38655 * 120.06352 * 0.22286 * 18 17 16 20 20 C 1.38663 * 119.96961 * 74.29998 * 15 14 4 21 21 O 1.36107 * 119.40451 * 359.63215 * 20 15 14 22 22 C 1.43427 * 116.59934 * 162.27655 * 21 20 15 23 23 C 1.53462 * 108.03652 * 46.67996 * 22 21 20 24 24 O 1.36108 * 119.39954 * 179.48541 * 19 18 17 25 25 H 1.09004 * 109.47144 * 309.35036 * 1 2 3 26 26 H 1.08997 * 109.47221 * 69.34339 * 1 2 3 27 27 H 1.09000 * 109.47538 * 189.35011 * 1 2 3 28 28 H 1.08993 * 109.46589 * 239.99870 * 2 1 3 29 29 H 1.09005 * 109.46968 * 172.24021 * 3 2 1 30 30 H 1.08997 * 109.47364 * 292.24043 * 3 2 1 31 31 H 1.08996 * 109.47688 * 52.24287 * 3 2 1 32 32 H 1.08991 * 109.47673 * 47.35314 * 5 4 2 33 33 H 1.09003 * 109.46945 * 167.35338 * 5 4 2 34 34 H 0.96999 * 119.99923 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.46964 * 315.21775 * 14 4 2 36 36 H 1.08997 * 109.47201 * 195.22127 * 14 4 2 37 37 H 1.07997 * 119.93599 * 0.04437 * 16 15 14 38 38 H 1.07994 * 119.94269 * 180.02562 * 17 16 15 39 39 H 1.08004 * 119.96936 * 179.97438 * 18 17 16 40 40 H 1.09000 * 110.07147 * 286.90612 * 22 21 20 41 41 H 1.09005 * 109.59856 * 166.17480 * 22 21 20 42 42 H 1.09007 * 109.71175 * 180.29170 * 23 22 21 43 43 H 1.09003 * 109.74937 * 59.68722 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4111 -0.1348 2.4146 6 6 2.0012 1.2236 2.6939 7 1 2.7931 1.6074 2.0678 8 6 1.5302 1.9761 3.7487 9 7 0.5656 1.5089 4.5109 10 14 2.2620 3.6595 4.0954 11 1 2.0670 4.5369 2.9133 12 1 1.5865 4.2598 5.2737 13 1 3.7139 3.5201 4.3743 14 6 1.7801 -2.1389 1.1070 15 6 2.7727 -2.7525 0.1536 16 6 2.3656 -3.1490 -1.1067 17 6 3.2733 -3.7126 -1.9833 18 6 4.5912 -3.8832 -1.6025 19 6 5.0048 -3.4934 -0.3377 20 6 4.0936 -2.9194 0.5413 21 8 4.4814 -2.5178 1.7826 22 6 5.7178 -3.0538 2.2738 23 6 6.7651 -2.9315 1.1587 24 8 6.3031 -3.6773 0.0269 25 1 -0.3634 0.6516 0.7947 26 1 -0.3633 0.3625 -0.9616 27 1 -0.3634 -1.0140 0.1670 28 1 1.8933 -0.5138 -0.8899 29 1 3.1212 1.4456 0.1388 30 1 1.7944 1.9147 -0.9512 31 1 1.5679 1.9948 0.8124 32 1 0.3347 -0.0408 2.2717 33 1 1.6093 -0.7972 3.2572 34 1 0.2345 2.0382 5.2532 35 1 0.7683 -2.3170 0.7425 36 1 1.8960 -2.5902 2.0923 37 1 1.3365 -3.0178 -1.4068 38 1 2.9524 -4.0210 -2.9673 39 1 5.2985 -4.3243 -2.2892 40 1 5.5898 -4.1018 2.5446 41 1 6.0416 -2.4858 3.1460 42 1 7.7169 -3.3368 1.5022 43 1 6.8895 -1.8841 0.8835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535072687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:21 Heat of formation + Delta-G solvation = -32.888984 kcal Electronic energy + Delta-G solvation = -24491.903808 eV Core-core repulsion = 21117.321674 eV Total energy + Delta-G solvation = -3374.582134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.02604 -38.30024 -37.07172 -36.82840 -32.64247 -31.91884 -31.03042 -29.83434 -28.18485 -27.44541 -26.15839 -24.76826 -24.33254 -22.08830 -21.26904 -20.78283 -18.65450 -18.19445 -17.18593 -16.80888 -16.20734 -15.32970 -15.02235 -14.92236 -14.61156 -14.47721 -14.10230 -14.04127 -13.69011 -13.46518 -13.17817 -12.74219 -12.40596 -12.11302 -11.78890 -11.53086 -11.32686 -11.29785 -11.08726 -10.96179 -10.90164 -10.69741 -10.61066 -10.55684 -10.22688 -10.20086 -10.03380 -9.30795 -8.92180 -8.32481 -8.23153 -7.80680 -7.04796 -5.94427 -3.90440 1.49753 1.56909 3.20386 3.36210 3.40634 3.43524 3.49406 3.90801 4.37023 4.48643 4.79940 4.90120 4.98555 5.04697 5.23706 5.30824 5.39171 5.46777 5.51551 5.54892 5.64043 5.79080 5.91694 5.97937 5.99224 6.16400 6.31323 6.32990 6.43518 6.50989 6.62026 6.69702 6.74709 6.82867 6.86307 7.07314 7.15557 7.35988 7.51068 7.57489 7.68469 7.93465 8.24204 8.35805 8.67896 9.14123 9.68621 11.16097 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.005406 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.311003 B = 5177.828815 C = 6089.203471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.091 3.909 3 C -0.145 4.145 4 N -0.518 5.518 5 C 0.188 3.812 6 C -0.495 4.495 7 H 0.073 0.927 8 C 0.051 3.949 9 N -0.901 5.901 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.096 3.904 15 C -0.059 4.059 16 C -0.115 4.115 17 C -0.123 4.123 18 C -0.123 4.123 19 C 0.039 3.961 20 C 0.078 3.922 21 O -0.276 6.276 22 C 0.018 3.982 23 C 0.021 3.979 24 O -0.313 6.313 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.026 0.974 31 H 0.096 0.904 32 H 0.005 0.995 33 H 0.022 0.978 34 H 0.259 0.741 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.371 -10.521 -9.600 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.018 4.018 3 C -0.202 4.202 4 N -0.242 5.242 5 C 0.064 3.936 6 C -0.534 4.534 7 H 0.091 0.909 8 C -0.149 4.149 9 N -0.542 5.542 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.204 1.204 14 C -0.032 4.032 15 C -0.060 4.060 16 C -0.134 4.134 17 C -0.141 4.141 18 C -0.142 4.142 19 C -0.005 4.005 20 C 0.032 3.968 21 O -0.189 6.189 22 C -0.058 4.058 23 C -0.054 4.054 24 O -0.228 6.228 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.115 0.885 32 H 0.023 0.977 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.090 0.910 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.813 -10.369 -9.328 15.987 hybrid contribution -0.295 0.788 0.389 0.927 sum 7.518 -9.580 -8.939 15.107 Atomic orbital electron populations 1.22446 0.98879 1.01220 1.01497 1.21422 0.91696 0.95807 0.92848 1.22238 1.01466 0.95742 1.00757 1.62328 1.59026 0.99200 1.03643 1.19833 0.93328 0.95031 0.85447 1.21388 1.18923 1.00799 1.12288 0.90920 1.24972 0.95438 0.98212 0.96260 1.69954 1.27829 1.37897 1.18488 0.86675 0.79304 0.84502 0.77618 1.20310 1.21556 1.20367 1.20883 0.93629 0.91238 0.97487 1.19425 0.91572 0.99257 0.95741 1.20855 0.99906 0.99986 0.92633 1.20760 0.92393 1.01205 0.99745 1.20286 0.96724 1.04103 0.93117 1.18886 0.83285 1.03923 0.94434 1.18708 0.92819 0.99963 0.85322 1.86682 1.38261 1.65418 1.28513 1.23628 0.84227 1.00550 0.97427 1.23604 0.98183 0.97667 0.85986 1.86252 1.24024 1.64565 1.47996 0.90934 0.93795 0.93758 0.92621 0.93052 0.95548 0.88508 0.97748 0.95967 0.93127 0.94557 0.90473 0.85647 0.85627 0.85533 0.91037 0.86211 0.86625 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 8.26 37.16 0.31 -3.06 16 2 C 0.09 1.80 2.82 -67.71 -0.19 1.61 16 3 C -0.14 -2.96 7.71 37.16 0.29 -2.67 16 4 N -0.52 -11.20 4.41 -229.52 -1.01 -12.21 16 5 C 0.19 4.81 4.47 -4.97 -0.02 4.79 16 6 C -0.50 -13.48 6.65 -34.44 -0.23 -13.71 16 7 H 0.07 1.97 5.46 -52.48 -0.29 1.68 16 8 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 9 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 10 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.10 1.81 4.60 -4.98 -0.02 1.79 16 15 C -0.06 -1.00 4.80 -104.46 -0.50 -1.50 16 16 C -0.11 -1.65 8.99 -39.59 -0.36 -2.00 16 17 C -0.12 -1.55 10.04 -39.59 -0.40 -1.95 16 18 C -0.12 -1.67 9.96 -39.43 -0.39 -2.07 16 19 C 0.04 0.61 6.49 -39.14 -0.25 0.36 16 20 C 0.08 1.35 6.47 -39.14 -0.25 1.09 16 21 O -0.28 -4.92 9.73 -32.86 -0.32 -5.24 16 22 C 0.02 0.23 7.27 37.40 0.27 0.50 16 23 C 0.02 0.25 7.25 37.40 0.27 0.52 16 24 O -0.31 -4.49 10.42 -32.86 -0.34 -4.83 16 25 H 0.07 1.55 6.56 -51.93 -0.34 1.20 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.78 6.28 -51.93 -0.33 0.45 16 28 H 0.06 1.03 6.84 -51.93 -0.36 0.68 16 29 H 0.05 1.08 7.56 -51.93 -0.39 0.69 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 2.24 5.37 -51.93 -0.28 1.96 16 32 H 0.00 0.13 5.71 -51.93 -0.30 -0.17 16 33 H 0.02 0.62 7.67 -51.93 -0.40 0.22 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.04 0.64 5.96 -51.93 -0.31 0.34 16 36 H 0.08 1.54 7.51 -51.93 -0.39 1.15 16 37 H 0.13 1.59 7.99 -52.49 -0.42 1.17 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -30.95 336.15 -8.78 -39.73 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.31 Total: 1.68 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -1.58 Total: -14.98 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.28 Total: -37.95 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.66 Total: -10.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.95 -8.78 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535072687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.844 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds