Wall clock time and date at job start Tue Mar 31 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 N 1.46905 * 109.46898 * 119.99967 * 2 1 3 5 5 C 1.46900 * 110.99783 * 307.32454 * 4 2 1 6 6 C 1.50706 * 109.46956 * 287.35137 * 5 4 2 7 7 H 1.08004 * 119.99987 * 356.48509 * 6 5 4 8 8 C 1.37871 * 119.99977 * 176.49303 * 6 5 4 9 9 N 1.31520 * 120.00165 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00292 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46959 * 59.99618 * 10 8 6 12 12 H 1.48495 * 109.47477 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46759 * 299.99819 * 10 8 6 14 14 C 1.46900 * 110.99949 * 71.27811 * 4 2 1 15 15 C 1.50693 * 109.47252 * 75.21971 * 14 4 2 16 16 C 1.38250 * 119.97045 * 254.27851 * 15 14 4 17 17 C 1.38205 * 120.11615 * 180.02562 * 16 15 14 18 18 C 1.38238 * 120.11374 * 0.07453 * 17 16 15 19 19 C 1.38655 * 120.06352 * 0.22286 * 18 17 16 20 20 C 1.38663 * 119.96961 * 74.29998 * 15 14 4 21 21 O 1.36107 * 119.40451 * 359.63215 * 20 15 14 22 22 C 1.43427 * 116.59934 * 162.27655 * 21 20 15 23 23 C 1.53462 * 108.03652 * 46.67996 * 22 21 20 24 24 O 1.36108 * 119.39954 * 179.48541 * 19 18 17 25 25 H 1.09004 * 109.47144 * 309.35036 * 1 2 3 26 26 H 1.08997 * 109.47221 * 69.34339 * 1 2 3 27 27 H 1.09000 * 109.47538 * 189.35011 * 1 2 3 28 28 H 1.08993 * 109.46589 * 239.99870 * 2 1 3 29 29 H 1.09005 * 109.46968 * 172.24021 * 3 2 1 30 30 H 1.08997 * 109.47364 * 292.24043 * 3 2 1 31 31 H 1.08996 * 109.47688 * 52.24287 * 3 2 1 32 32 H 1.08991 * 109.47673 * 47.35314 * 5 4 2 33 33 H 1.09003 * 109.46945 * 167.35338 * 5 4 2 34 34 H 0.96999 * 119.99923 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.46964 * 315.21775 * 14 4 2 36 36 H 1.08997 * 109.47201 * 195.22127 * 14 4 2 37 37 H 1.07997 * 119.93599 * 0.04437 * 16 15 14 38 38 H 1.07994 * 119.94269 * 180.02562 * 17 16 15 39 39 H 1.08004 * 119.96936 * 179.97438 * 18 17 16 40 40 H 1.09000 * 110.07147 * 286.90612 * 22 21 20 41 41 H 1.09005 * 109.59856 * 166.17480 * 22 21 20 42 42 H 1.09007 * 109.71175 * 180.29170 * 23 22 21 43 43 H 1.09003 * 109.74937 * 59.68722 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4111 -0.1348 2.4146 6 6 2.0012 1.2236 2.6939 7 1 2.7931 1.6074 2.0678 8 6 1.5302 1.9761 3.7487 9 7 0.5656 1.5089 4.5109 10 14 2.2620 3.6595 4.0954 11 1 2.0670 4.5369 2.9133 12 1 1.5865 4.2598 5.2737 13 1 3.7139 3.5201 4.3743 14 6 1.7801 -2.1389 1.1070 15 6 2.7727 -2.7525 0.1536 16 6 2.3656 -3.1490 -1.1067 17 6 3.2733 -3.7126 -1.9833 18 6 4.5912 -3.8832 -1.6025 19 6 5.0048 -3.4934 -0.3377 20 6 4.0936 -2.9194 0.5413 21 8 4.4814 -2.5178 1.7826 22 6 5.7178 -3.0538 2.2738 23 6 6.7651 -2.9315 1.1587 24 8 6.3031 -3.6773 0.0269 25 1 -0.3634 0.6516 0.7947 26 1 -0.3633 0.3625 -0.9616 27 1 -0.3634 -1.0140 0.1670 28 1 1.8933 -0.5138 -0.8899 29 1 3.1212 1.4456 0.1388 30 1 1.7944 1.9147 -0.9512 31 1 1.5679 1.9948 0.8124 32 1 0.3347 -0.0408 2.2717 33 1 1.6093 -0.7972 3.2572 34 1 0.2345 2.0382 5.2532 35 1 0.7683 -2.3170 0.7425 36 1 1.8960 -2.5902 2.0923 37 1 1.3365 -3.0178 -1.4068 38 1 2.9524 -4.0210 -2.9673 39 1 5.2985 -4.3243 -2.2892 40 1 5.5898 -4.1018 2.5446 41 1 6.0416 -2.4858 3.1460 42 1 7.7169 -3.3368 1.5022 43 1 6.8895 -1.8841 0.8835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535072687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:20 Heat of formation + Delta-G solvation = -52.324185 kcal Electronic energy + Delta-G solvation = -24492.746581 eV Core-core repulsion = 21117.321674 eV Total energy + Delta-G solvation = -3375.424908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.13274 -39.75057 -38.31104 -38.05159 -34.69748 -33.35324 -32.05204 -31.40438 -29.27355 -29.26485 -27.78941 -26.21008 -25.50729 -24.04084 -22.50790 -21.83088 -20.25634 -19.37832 -18.51132 -18.25549 -17.73924 -16.82521 -16.53237 -16.26853 -16.05156 -15.64118 -15.48256 -15.25735 -14.97665 -14.91759 -14.64326 -14.10347 -13.98005 -13.67029 -13.20533 -13.05480 -12.87639 -12.77545 -12.67827 -12.51509 -12.48443 -12.30276 -11.99402 -11.96554 -11.89520 -11.78579 -11.35011 -11.11656 -10.88752 -10.46336 -9.40314 -8.93959 -8.78982 -8.09494 -6.12465 0.35941 0.46583 1.41770 1.43776 1.51251 2.18518 2.44664 2.45895 2.77813 3.21571 3.36564 3.49890 3.70543 3.95823 4.03297 4.15534 4.19989 4.30379 4.35722 4.38046 4.44241 4.55364 4.57792 4.62148 4.67335 4.75712 4.89985 5.01606 5.03164 5.07324 5.17611 5.26319 5.29069 5.36259 5.40900 5.59941 5.61185 5.78130 5.80670 5.81771 6.08018 6.21085 6.54555 6.56609 6.79070 6.99246 7.50970 9.00605 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.005406 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.311003 B = 5177.828815 C = 6089.203471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 C -0.139 4.139 4 N -0.526 5.526 5 C 0.207 3.793 6 C -0.498 4.498 7 H 0.072 0.928 8 C -0.001 4.001 9 N -0.938 5.938 10 Si 0.955 3.045 11 H -0.267 1.267 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.103 3.897 15 C -0.083 4.083 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.121 4.121 19 C 0.026 3.974 20 C 0.055 3.945 21 O -0.316 6.316 22 C 0.009 3.991 23 C 0.023 3.977 24 O -0.319 6.319 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.065 0.935 32 H -0.014 1.014 33 H -0.015 1.015 34 H 0.259 0.741 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.144 0.856 38 H 0.165 0.835 39 H 0.152 0.848 40 H 0.081 0.919 41 H 0.132 0.868 42 H 0.156 0.844 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.498 -10.877 -12.278 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 C -0.196 4.196 4 N -0.250 5.250 5 C 0.081 3.919 6 C -0.536 4.536 7 H 0.090 0.910 8 C -0.198 4.198 9 N -0.580 5.580 10 Si 0.781 3.219 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.025 4.025 15 C -0.085 4.085 16 C -0.133 4.133 17 C -0.128 4.128 18 C -0.140 4.140 19 C -0.019 4.019 20 C 0.009 3.991 21 O -0.230 6.230 22 C -0.066 4.066 23 C -0.052 4.052 24 O -0.235 6.235 25 H 0.056 0.944 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.003 0.997 33 H 0.003 0.997 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.162 0.838 38 H 0.183 0.817 39 H 0.170 0.830 40 H 0.099 0.901 41 H 0.150 0.850 42 H 0.173 0.827 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.957 -10.735 -12.027 18.442 hybrid contribution -0.603 0.812 1.172 1.548 sum 8.354 -9.923 -10.855 16.914 Atomic orbital electron populations 1.22317 0.97895 1.00994 1.01805 1.21507 0.92469 0.95367 0.92496 1.22100 1.00243 0.96103 1.01165 1.62227 1.58906 1.00936 1.02917 1.19442 0.92240 0.93952 0.86290 1.21640 1.18540 1.01387 1.12068 0.90978 1.25779 0.95847 1.02007 0.96133 1.70091 1.29338 1.39425 1.19135 0.85648 0.78509 0.80088 0.77683 1.19158 1.21310 1.19852 1.20762 0.95083 0.89421 0.97204 1.19371 0.91236 1.01202 0.96675 1.21104 1.01222 0.99372 0.91607 1.21179 0.91509 0.99297 1.00817 1.20727 0.97738 1.02963 0.92570 1.19151 0.83583 1.04108 0.95028 1.18958 0.93482 1.01081 0.85592 1.86600 1.40502 1.66557 1.29349 1.23904 0.83170 1.01177 0.98320 1.23800 0.99172 0.97458 0.84763 1.86235 1.23427 1.64972 1.48830 0.94443 0.90725 0.93059 0.90464 0.94290 0.92437 0.91654 0.99679 0.99662 0.93195 0.93504 0.93033 0.83829 0.81709 0.83025 0.90124 0.84979 0.82657 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.22 8.26 71.98 0.59 -5.63 16 2 C 0.09 3.48 2.82 44.91 0.13 3.61 16 3 C -0.14 -5.58 7.71 71.98 0.56 -5.03 16 4 N -0.53 -23.37 4.41 -880.07 -3.88 -27.25 16 5 C 0.21 11.12 4.47 85.56 0.38 11.50 16 6 C -0.50 -28.03 6.65 25.60 0.17 -27.86 16 7 H 0.07 4.00 5.46 -2.91 -0.02 3.98 16 8 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 9 N -0.94 -57.04 13.29 21.45 0.28 -56.76 16 10 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 14 C 0.10 4.01 4.60 85.55 0.39 4.40 16 15 C -0.08 -2.81 4.80 -19.76 -0.09 -2.91 16 16 C -0.11 -2.98 8.99 22.26 0.20 -2.78 16 17 C -0.11 -2.36 10.04 22.26 0.22 -2.14 16 18 C -0.12 -2.91 9.96 22.37 0.22 -2.69 16 19 C 0.03 0.78 6.49 22.56 0.15 0.92 16 20 C 0.05 1.89 6.47 22.56 0.15 2.04 16 21 O -0.32 -11.70 9.73 -82.55 -0.80 -12.50 16 22 C 0.01 0.24 7.27 72.14 0.52 0.77 16 23 C 0.02 0.50 7.25 72.14 0.52 1.03 16 24 O -0.32 -8.65 10.42 -82.56 -0.86 -9.51 16 25 H 0.04 1.61 6.56 -2.38 -0.02 1.60 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.05 1.76 6.28 -2.39 -0.01 1.74 16 28 H 0.08 2.69 6.84 -2.39 -0.02 2.68 16 29 H 0.04 1.62 7.56 -2.38 -0.02 1.61 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 3.05 5.37 -2.39 -0.01 3.04 16 32 H -0.01 -0.82 5.71 -2.39 -0.01 -0.83 16 33 H -0.01 -0.88 7.67 -2.39 -0.02 -0.90 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.05 1.68 5.96 -2.38 -0.01 1.66 16 36 H 0.05 2.21 7.51 -2.39 -0.02 2.19 16 37 H 0.14 3.14 7.99 -2.91 -0.02 3.12 16 38 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 39 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 42 H 0.16 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -69.89 336.15 2.35 -67.54 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.01 Total: 15.90 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 4.58 Total: -24.36 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -3.60 Total: -84.01 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.66 Total: -22.01 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.89 2.35 -67.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535072687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.216 kcal (2) G-P(sol) polarization free energy of solvation -69.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds