Wall clock time and date at job start Tue Mar 31 2020 06:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47260 * 2 1 4 4 N 1.46499 * 109.47246 * 120.00161 * 2 1 3 5 5 C 1.46497 * 120.00352 * 300.00067 * 4 2 1 6 6 C 1.50695 * 109.47199 * 270.00108 * 5 4 2 7 7 H 1.08009 * 119.99926 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00397 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00525 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99666 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47036 * 89.99715 * 10 8 6 12 12 H 1.48496 * 109.47111 * 209.99707 * 10 8 6 13 13 H 1.48503 * 109.47246 * 329.99776 * 10 8 6 14 14 C 1.34782 * 119.99643 * 119.99715 * 4 2 1 15 15 O 1.21283 * 119.99802 * 179.97438 * 14 4 2 16 16 C 1.50698 * 120.00404 * 0.02562 * 14 4 2 17 17 C 1.52998 * 109.47326 * 179.97438 * 16 14 4 18 18 C 1.50698 * 109.47322 * 179.97438 * 17 16 14 19 19 C 1.38269 * 119.94432 * 89.99694 * 18 17 16 20 20 C 1.38137 * 120.06013 * 180.02562 * 19 18 17 21 21 C 1.38737 * 119.94162 * 359.97438 * 20 19 18 22 22 O 1.35896 * 120.05545 * 180.02562 * 21 20 19 23 23 C 1.38734 * 119.88732 * 0.27760 * 21 20 19 24 24 C 1.38143 * 119.94306 * 359.42517 * 23 21 20 25 25 H 1.08996 * 109.46966 * 299.99470 * 1 2 3 26 26 H 1.09000 * 109.47129 * 60.00002 * 1 2 3 27 27 H 1.09006 * 109.47258 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47178 * 240.00134 * 2 1 3 29 29 H 1.08998 * 109.47280 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47412 * 300.00722 * 3 2 1 31 31 H 1.09002 * 109.46915 * 59.99973 * 3 2 1 32 32 H 1.09006 * 109.46655 * 29.99742 * 5 4 2 33 33 H 1.08999 * 109.47347 * 149.99547 * 5 4 2 34 34 H 0.96994 * 120.00538 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47186 * 59.99143 * 16 14 4 36 36 H 1.09008 * 109.46639 * 299.99589 * 16 14 4 37 37 H 1.08997 * 109.47096 * 59.99460 * 17 16 14 38 38 H 1.09005 * 109.46515 * 299.99512 * 17 16 14 39 39 H 1.08008 * 119.96973 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.03660 * 179.97438 * 20 19 18 41 41 H 0.96700 * 114.00170 * 90.00174 * 22 21 20 42 42 H 1.07999 * 120.02623 * 179.72382 * 23 21 20 43 43 H 1.08005 * 119.97511 * 180.27480 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7032 0.8017 2.9830 7 1 3.5432 1.0356 2.3457 8 6 2.5812 1.4106 4.2140 9 7 3.4879 2.2758 4.6124 10 14 1.1287 1.0054 5.3166 11 1 1.4783 -0.1399 6.1949 12 1 0.7971 2.1870 6.1526 13 1 -0.0439 0.6469 4.4788 14 6 2.7932 -1.7865 1.0723 15 8 3.1979 -2.3580 2.0626 16 6 3.1576 -2.3010 -0.2964 17 6 4.0376 -3.5447 -0.1561 18 6 4.4016 -4.0596 -1.5248 19 6 5.5463 -3.6033 -2.1520 20 6 5.8819 -4.0733 -3.4068 21 6 5.0695 -5.0043 -4.0377 22 8 5.3978 -5.4686 -5.2720 23 6 3.9187 -5.4566 -3.4085 24 6 3.5908 -4.9881 -2.1510 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.6904 0.2973 2.4843 33 1 1.6238 -1.0228 3.2291 34 1 3.4023 2.7039 5.4786 35 1 3.7027 -1.5301 -0.8411 36 1 2.2494 -2.5578 -0.8417 37 1 3.4929 -4.3157 0.3887 38 1 4.9459 -3.2874 0.3890 39 1 6.1786 -2.8788 -1.6603 40 1 6.7759 -3.7164 -3.8965 41 1 5.9563 -6.2579 -5.2596 42 1 3.2824 -6.1780 -3.8995 43 1 2.6974 -5.3432 -1.6589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545518658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:32 Heat of formation + Delta-G solvation = -65.295629 kcal Electronic energy + Delta-G solvation = -23048.398603 eV Core-core repulsion = 19672.411212 eV Total energy + Delta-G solvation = -3375.987392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01031 -39.26395 -37.21849 -36.05736 -33.38840 -32.63898 -31.15170 -30.98450 -29.42480 -27.64572 -26.75864 -24.45496 -22.96109 -22.24764 -21.41507 -20.85441 -18.61011 -17.94487 -16.94345 -16.85297 -16.05849 -15.83671 -15.24316 -15.19731 -14.90988 -14.13949 -13.92736 -13.62798 -13.56821 -13.31802 -13.09163 -12.85849 -12.48052 -12.43269 -12.04877 -11.88029 -11.72685 -11.70235 -11.36622 -11.30833 -10.97541 -10.84823 -10.83666 -10.60499 -10.49812 -10.30746 -10.08705 -9.44988 -9.15356 -9.01127 -8.56335 -8.55825 -7.68365 -6.06229 -4.03418 1.05345 1.19066 3.29644 3.35492 3.37340 3.37856 3.43183 3.84151 4.02572 4.41324 4.69754 4.71218 4.81164 5.16012 5.16220 5.20615 5.23557 5.27692 5.36940 5.42111 5.51849 5.62033 5.64766 5.75778 5.81069 5.97586 6.01807 6.10434 6.16873 6.24605 6.25629 6.28299 6.32010 6.53501 6.56108 6.66703 6.79767 6.98246 7.01209 7.40289 7.41876 7.64826 8.30937 8.50579 8.96460 9.02590 9.54721 11.07044 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.003315 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.674948 B = 8445.327141 C = 8684.445542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.589 5.589 5 C 0.215 3.785 6 C -0.520 4.520 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.506 3.494 15 O -0.543 6.543 16 C -0.133 4.133 17 C -0.066 4.066 18 C -0.081 4.081 19 C -0.100 4.100 20 C -0.143 4.143 21 C 0.092 3.908 22 O -0.502 6.502 23 C -0.144 4.144 24 C -0.101 4.101 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.387 0.613 42 H 0.126 0.874 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.781 -12.517 -17.581 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.321 5.321 5 C 0.094 3.906 6 C -0.559 4.559 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.538 5.538 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.293 3.707 15 O -0.421 6.421 16 C -0.173 4.173 17 C -0.104 4.104 18 C -0.082 4.082 19 C -0.118 4.118 20 C -0.161 4.161 21 C 0.048 3.952 22 O -0.312 6.312 23 C -0.162 4.162 24 C -0.119 4.119 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.243 0.757 42 H 0.144 0.856 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.874 -12.201 -17.082 21.010 hybrid contribution -0.384 -0.362 0.712 0.887 sum -1.259 -12.564 -16.370 20.674 Atomic orbital electron populations 1.22171 0.95744 1.01728 1.02431 1.21038 0.93909 0.94411 0.87819 1.22132 1.01737 0.95324 1.02264 1.48035 1.49562 1.26605 1.07860 1.19608 0.96273 0.95099 0.79597 1.21341 1.09195 1.22379 1.02962 0.90580 1.24852 0.96052 0.94802 0.97385 1.69888 1.34625 1.28479 1.20763 0.86899 0.83490 0.78198 0.81391 1.20006 1.21187 1.19141 1.20369 0.78834 0.80744 0.90734 1.90667 1.53221 1.58317 1.39851 1.21668 1.00943 0.98366 0.96346 1.20360 1.01026 0.96919 0.92093 1.20073 0.94775 0.96490 0.96821 1.21045 0.96814 0.99513 0.94391 1.21416 1.00279 0.99077 0.95336 1.18476 0.94707 0.97018 0.85026 1.84829 1.72638 1.48780 1.24911 1.21389 0.97861 1.01650 0.95320 1.20995 0.99547 0.97000 0.94390 0.91631 0.92032 0.92902 0.90345 0.92453 0.93254 0.90100 0.95215 0.94828 0.92661 0.89275 0.89571 0.90157 0.89895 0.85311 0.85539 0.75729 0.85620 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.17 37.16 0.34 -1.90 16 2 C 0.13 2.09 3.17 -67.93 -0.22 1.87 16 3 C -0.16 -2.61 8.47 37.16 0.31 -2.29 16 4 N -0.59 -11.85 2.39 -167.48 -0.40 -12.25 16 5 C 0.21 5.17 3.66 -5.20 -0.02 5.15 16 6 C -0.52 -14.58 8.38 -34.44 -0.29 -14.87 16 7 H 0.08 2.33 7.87 -52.48 -0.41 1.92 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 10 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 14 C 0.51 10.02 7.67 -10.98 -0.08 9.94 16 15 O -0.54 -13.03 15.56 5.55 0.09 -12.94 16 16 C -0.13 -1.88 3.99 -27.89 -0.11 -1.99 16 17 C -0.07 -0.88 4.63 -27.89 -0.13 -1.01 16 18 C -0.08 -0.93 5.13 -104.60 -0.54 -1.47 16 19 C -0.10 -1.08 9.69 -39.61 -0.38 -1.46 16 20 C -0.14 -1.45 9.99 -39.43 -0.39 -1.84 16 21 C 0.09 0.93 6.71 -39.21 -0.26 0.67 16 22 O -0.50 -4.47 13.50 -19.41 -0.26 -4.73 16 23 C -0.14 -1.41 9.99 -39.43 -0.39 -1.81 16 24 C -0.10 -1.05 9.69 -39.61 -0.38 -1.43 16 25 H 0.06 1.01 6.66 -51.93 -0.35 0.67 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.03 5.77 -51.93 -0.30 0.73 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 32 H 0.03 0.69 5.48 -51.93 -0.28 0.40 16 33 H 0.03 0.88 6.85 -51.93 -0.36 0.52 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.09 1.17 7.79 -51.93 -0.40 0.77 16 36 H 0.09 1.03 7.79 -51.92 -0.40 0.63 16 37 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 38 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 39 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.39 1.54 9.06 45.56 0.41 1.95 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -34.41 352.85 -7.64 -42.05 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.84 Total: 2.91 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.65 Total: -10.49 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.37 Total: -38.98 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.18 Total: -17.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.41 -7.64 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545518658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.244 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds