Wall clock time and date at job start Tue Mar 31 2020 06:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47260 * 2 1 4 4 N 1.46499 * 109.47246 * 120.00161 * 2 1 3 5 5 C 1.46497 * 120.00352 * 300.00067 * 4 2 1 6 6 C 1.50695 * 109.47199 * 270.00108 * 5 4 2 7 7 H 1.08009 * 119.99926 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00397 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00525 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99666 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47036 * 89.99715 * 10 8 6 12 12 H 1.48496 * 109.47111 * 209.99707 * 10 8 6 13 13 H 1.48503 * 109.47246 * 329.99776 * 10 8 6 14 14 C 1.34782 * 119.99643 * 119.99715 * 4 2 1 15 15 O 1.21283 * 119.99802 * 179.97438 * 14 4 2 16 16 C 1.50698 * 120.00404 * 0.02562 * 14 4 2 17 17 C 1.52998 * 109.47326 * 179.97438 * 16 14 4 18 18 C 1.50698 * 109.47322 * 179.97438 * 17 16 14 19 19 C 1.38269 * 119.94432 * 89.99694 * 18 17 16 20 20 C 1.38137 * 120.06013 * 180.02562 * 19 18 17 21 21 C 1.38737 * 119.94162 * 359.97438 * 20 19 18 22 22 O 1.35896 * 120.05545 * 180.02562 * 21 20 19 23 23 C 1.38734 * 119.88732 * 0.27760 * 21 20 19 24 24 C 1.38143 * 119.94306 * 359.42517 * 23 21 20 25 25 H 1.08996 * 109.46966 * 299.99470 * 1 2 3 26 26 H 1.09000 * 109.47129 * 60.00002 * 1 2 3 27 27 H 1.09006 * 109.47258 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47178 * 240.00134 * 2 1 3 29 29 H 1.08998 * 109.47280 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47412 * 300.00722 * 3 2 1 31 31 H 1.09002 * 109.46915 * 59.99973 * 3 2 1 32 32 H 1.09006 * 109.46655 * 29.99742 * 5 4 2 33 33 H 1.08999 * 109.47347 * 149.99547 * 5 4 2 34 34 H 0.96994 * 120.00538 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47186 * 59.99143 * 16 14 4 36 36 H 1.09008 * 109.46639 * 299.99589 * 16 14 4 37 37 H 1.08997 * 109.47096 * 59.99460 * 17 16 14 38 38 H 1.09005 * 109.46515 * 299.99512 * 17 16 14 39 39 H 1.08008 * 119.96973 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.03660 * 179.97438 * 20 19 18 41 41 H 0.96700 * 114.00170 * 90.00174 * 22 21 20 42 42 H 1.07999 * 120.02623 * 179.72382 * 23 21 20 43 43 H 1.08005 * 119.97511 * 180.27480 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7032 0.8017 2.9830 7 1 3.5432 1.0356 2.3457 8 6 2.5812 1.4106 4.2140 9 7 3.4879 2.2758 4.6124 10 14 1.1287 1.0054 5.3166 11 1 1.4783 -0.1399 6.1949 12 1 0.7971 2.1870 6.1526 13 1 -0.0439 0.6469 4.4788 14 6 2.7932 -1.7865 1.0723 15 8 3.1979 -2.3580 2.0626 16 6 3.1576 -2.3010 -0.2964 17 6 4.0376 -3.5447 -0.1561 18 6 4.4016 -4.0596 -1.5248 19 6 5.5463 -3.6033 -2.1520 20 6 5.8819 -4.0733 -3.4068 21 6 5.0695 -5.0043 -4.0377 22 8 5.3978 -5.4686 -5.2720 23 6 3.9187 -5.4566 -3.4085 24 6 3.5908 -4.9881 -2.1510 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.6904 0.2973 2.4843 33 1 1.6238 -1.0228 3.2291 34 1 3.4023 2.7039 5.4786 35 1 3.7027 -1.5301 -0.8411 36 1 2.2494 -2.5578 -0.8417 37 1 3.4929 -4.3157 0.3887 38 1 4.9459 -3.2874 0.3890 39 1 6.1786 -2.8788 -1.6603 40 1 6.7759 -3.7164 -3.8965 41 1 5.9563 -6.2579 -5.2596 42 1 3.2824 -6.1780 -3.8995 43 1 2.6974 -5.3432 -1.6589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545518658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:31 Heat of formation + Delta-G solvation = -88.443405 kcal Electronic energy + Delta-G solvation = -23049.402366 eV Core-core repulsion = 19672.411212 eV Total energy + Delta-G solvation = -3376.991154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.06495 -40.50642 -38.03362 -37.54096 -34.95461 -34.25985 -32.56337 -31.90324 -30.77670 -29.17351 -27.97950 -25.75109 -23.94743 -23.71628 -22.68956 -21.91082 -19.44679 -19.29881 -19.05342 -18.30393 -16.99026 -16.92209 -16.60162 -16.32393 -16.06605 -15.85123 -15.06781 -14.86517 -14.61507 -14.55378 -14.35691 -14.22727 -13.84522 -13.69724 -13.58091 -13.28711 -12.92708 -12.88013 -12.67560 -12.61338 -12.33006 -12.30465 -12.22115 -11.94440 -11.91037 -11.71090 -11.51953 -11.32812 -10.79324 -10.60382 -9.91121 -9.39322 -9.37713 -8.30258 -6.32380 0.27727 0.43247 1.31531 1.35381 1.43196 1.83210 2.31465 2.32975 2.71202 3.03774 3.35605 3.59473 3.90492 3.96436 4.05519 4.10404 4.21575 4.26460 4.29621 4.42836 4.49213 4.59882 4.61673 4.76547 4.87765 4.91807 4.94728 4.95679 4.98595 5.05613 5.09599 5.14582 5.21921 5.38949 5.41171 5.49388 5.49754 5.59066 5.72303 5.73003 5.93413 6.29415 6.68174 6.77475 6.89617 7.26198 7.46872 8.86484 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.003315 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.674948 B = 8445.327141 C = 8684.445542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 C -0.151 4.151 4 N -0.596 5.596 5 C 0.225 3.775 6 C -0.518 4.518 7 H 0.033 0.967 8 C 0.009 3.991 9 N -0.947 5.947 10 Si 0.940 3.060 11 H -0.278 1.278 12 H -0.277 1.277 13 H -0.240 1.240 14 C 0.495 3.505 15 O -0.595 6.595 16 C -0.119 4.119 17 C -0.058 4.058 18 C -0.092 4.092 19 C -0.108 4.108 20 C -0.150 4.150 21 C 0.093 3.907 22 O -0.511 6.511 23 C -0.147 4.147 24 C -0.101 4.101 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.032 0.968 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.013 0.987 34 H 0.266 0.734 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.409 0.591 42 H 0.144 0.856 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 -13.840 -20.150 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 C -0.209 4.209 4 N -0.327 5.327 5 C 0.103 3.897 6 C -0.557 4.557 7 H 0.051 0.949 8 C -0.188 4.188 9 N -0.588 5.588 10 Si 0.764 3.236 11 H -0.204 1.204 12 H -0.202 1.202 13 H -0.163 1.163 14 C 0.285 3.715 15 O -0.477 6.477 16 C -0.158 4.158 17 C -0.096 4.096 18 C -0.092 4.092 19 C -0.126 4.126 20 C -0.169 4.169 21 C 0.048 3.952 22 O -0.324 6.324 23 C -0.165 4.165 24 C -0.119 4.119 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.051 0.949 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.268 0.732 42 H 0.162 0.838 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.946 -13.532 -19.710 24.088 hybrid contribution 0.381 0.036 1.387 1.439 sum -2.565 -13.495 -18.323 22.900 Atomic orbital electron populations 1.22140 0.93577 1.02722 1.03079 1.21431 0.95641 0.93478 0.87145 1.22068 1.00147 0.96381 1.02346 1.48182 1.49738 1.26996 1.07752 1.19229 0.95586 0.93229 0.81699 1.21524 1.08791 1.22896 1.02449 0.94874 1.25783 0.99246 0.94650 0.99133 1.70041 1.37081 1.30118 1.21541 0.85821 0.80547 0.77898 0.79348 1.20407 1.20243 1.16319 1.21435 0.77548 0.80073 0.92477 1.90634 1.54972 1.59922 1.42165 1.21656 1.02646 0.98824 0.92682 1.20205 0.99771 0.96430 0.93214 1.19878 0.95711 0.97767 0.95892 1.21130 0.96818 0.99769 0.94851 1.21569 1.00910 0.99225 0.95148 1.18613 0.94681 0.96686 0.85172 1.84768 1.73270 1.50121 1.24257 1.21599 0.97971 1.01825 0.95135 1.21151 0.99753 0.96354 0.94598 0.93732 0.88612 0.91733 0.86680 0.94880 0.89242 0.93822 0.93570 0.96876 0.92508 0.87929 0.86232 0.90770 0.92132 0.85276 0.84353 0.73193 0.83801 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 9.17 71.98 0.66 -3.13 16 2 C 0.13 3.67 3.17 44.99 0.14 3.81 16 3 C -0.15 -4.93 8.47 71.98 0.61 -4.32 16 4 N -0.60 -23.78 2.39 -802.16 -1.91 -25.70 16 5 C 0.23 10.95 3.66 85.63 0.31 11.26 16 6 C -0.52 -30.21 8.38 25.60 0.21 -30.00 16 7 H 0.03 2.16 7.87 -2.91 -0.02 2.13 16 8 C 0.01 0.55 5.47 84.66 0.46 1.01 16 9 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 10 Si 0.94 44.98 27.47 68.60 1.88 46.86 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 14 C 0.50 19.61 7.67 87.66 0.67 20.28 16 15 O -0.60 -29.53 15.56 -3.04 -0.05 -29.58 16 16 C -0.12 -3.14 3.99 29.85 0.12 -3.02 16 17 C -0.06 -1.51 4.63 29.85 0.14 -1.38 16 18 C -0.09 -1.96 5.13 -19.85 -0.10 -2.07 16 19 C -0.11 -2.20 9.69 22.25 0.22 -1.99 16 20 C -0.15 -2.77 9.99 22.37 0.22 -2.55 16 21 C 0.09 1.65 6.71 22.51 0.15 1.80 16 22 O -0.51 -7.67 13.50 -92.38 -1.25 -8.92 16 23 C -0.15 -2.46 9.99 22.37 0.22 -2.24 16 24 C -0.10 -1.82 9.69 22.25 0.22 -1.61 16 25 H 0.04 1.26 6.66 -2.39 -0.02 1.25 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.12 2.55 5.77 -2.39 -0.01 2.54 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.04 1.73 6.92 -2.39 -0.02 1.71 16 32 H 0.05 2.10 5.48 -2.38 -0.01 2.09 16 33 H 0.01 0.70 6.85 -2.39 -0.02 0.68 16 34 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.10 2.49 7.79 -2.39 -0.02 2.47 16 36 H 0.12 2.41 7.79 -2.38 -0.02 2.39 16 37 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 38 H 0.06 1.81 8.04 -2.38 -0.02 1.80 16 39 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 41 H 0.41 2.10 9.06 -74.06 -0.67 1.43 16 42 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -78.98 352.85 3.51 -75.47 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.28 Total: 15.90 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 4.26 Total: -14.12 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.62 Total: -85.61 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.29 Total: -38.50 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -78.98 3.51 -75.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545518658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.972 kcal (2) G-P(sol) polarization free energy of solvation -78.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds