Wall clock time and date at job start Tue Mar 31 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 H 1.08997 * 109.46769 * 305.00011 * 3 2 1 5 5 C 1.50700 * 109.46781 * 185.00265 * 3 2 1 6 6 H 1.08006 * 119.99723 * 240.00113 * 5 3 2 7 7 C 1.37878 * 120.00527 * 59.99960 * 5 3 2 8 8 N 1.31515 * 119.99461 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00209 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47170 * 60.00326 * 9 7 5 11 11 H 1.48498 * 109.46932 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47162 * 300.00069 * 9 7 5 13 13 N 1.46494 * 109.47118 * 65.00507 * 3 2 1 14 14 C 1.34784 * 119.99635 * 274.99773 * 13 3 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 3 17 17 O 1.42896 * 109.47293 * 179.97438 * 16 14 13 18 18 C 1.35900 * 116.99953 * 179.97438 * 17 16 14 19 19 C 1.38727 * 120.05906 * 359.72795 * 18 17 16 20 20 C 1.38146 * 119.94604 * 179.73893 * 19 18 17 21 21 C 1.50701 * 119.97118 * 180.27608 * 20 19 18 22 22 C 1.38264 * 120.05199 * 0.51271 * 20 19 18 23 23 C 1.38260 * 120.11546 * 359.76626 * 22 20 19 24 24 C 1.50703 * 119.97363 * 180.02562 * 23 22 20 25 25 C 1.38146 * 120.05620 * 359.97284 * 23 22 20 26 26 H 1.09002 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46957 * 299.99648 * 1 2 3 28 28 H 1.08997 * 109.47207 * 59.99863 * 1 2 3 29 29 H 1.09002 * 109.46957 * 240.00352 * 2 1 3 30 30 H 1.08997 * 109.47207 * 120.00137 * 2 1 3 31 31 H 0.96997 * 119.99851 * 179.97438 * 8 7 5 32 32 H 0.96995 * 120.00292 * 95.27206 * 13 3 2 33 33 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 34 34 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 35 35 H 1.08001 * 120.02530 * 359.97438 * 19 18 17 36 36 H 1.09005 * 109.46732 * 270.23547 * 21 20 19 37 37 H 1.08990 * 109.47240 * 30.23245 * 21 20 19 38 38 H 1.08996 * 109.46710 * 150.23762 * 21 20 19 39 39 H 1.08005 * 119.94131 * 179.73991 * 22 20 19 40 40 H 1.08995 * 109.46988 * 269.97242 * 24 23 22 41 41 H 1.08998 * 109.47311 * 29.97579 * 24 23 22 42 42 H 1.09004 * 109.46856 * 149.97687 * 24 23 22 43 43 H 1.08001 * 120.03225 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5975 0.1473 -0.2350 11 1 6.3977 0.2179 -2.6510 12 1 6.4994 2.2816 -1.3822 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3393 2.6327 0.4341 16 6 0.0366 3.3386 2.6545 17 8 -1.2885 3.8586 2.5297 18 6 -1.8034 4.5014 3.6107 19 6 -1.0509 4.6242 4.7696 20 6 -1.5745 5.2829 5.8653 21 6 -0.7552 5.4220 7.1224 22 6 -2.8515 5.8102 5.8110 23 6 -3.6057 5.6841 4.6591 24 6 -4.9970 6.2606 4.6033 25 6 -3.0846 5.0311 3.5589 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8292 -0.0611 -2.9498 32 1 2.2734 2.1266 1.9964 33 1 0.0681 2.6145 3.4687 34 1 0.7280 4.1541 2.8668 35 1 -0.0551 4.2086 4.8140 36 1 -0.9395 4.5668 7.7727 37 1 0.3029 5.4606 6.8641 38 1 -1.0367 6.3392 7.6398 39 1 -3.2607 6.3211 6.6701 40 1 -5.7145 5.5110 4.9368 41 1 -5.0550 7.1336 5.2533 42 1 -5.2278 6.5542 3.5792 43 1 -3.6743 4.9325 2.6595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546570962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:00 Heat of formation + Delta-G solvation = -67.581524 kcal Electronic energy + Delta-G solvation = -22750.344210 eV Core-core repulsion = 19374.257694 eV Total energy + Delta-G solvation = -3376.086515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37547 -39.03666 -37.56234 -35.03116 -33.71720 -32.46765 -31.36015 -30.88585 -28.51325 -27.39964 -27.01490 -26.27636 -23.07292 -21.88189 -21.17989 -20.18701 -19.39633 -17.69938 -17.31859 -16.19647 -16.13805 -16.07194 -15.36020 -15.17978 -14.42883 -14.33096 -13.94704 -13.86441 -13.43094 -13.39333 -13.15244 -12.76204 -12.70249 -12.56209 -12.31333 -11.95328 -11.76161 -11.58260 -11.45198 -11.27108 -11.04112 -10.95479 -10.85317 -10.72018 -10.35200 -10.21007 -9.64981 -9.11304 -9.02449 -8.75326 -8.52968 -8.20225 -7.89782 -6.15107 -4.25151 1.19226 1.36313 2.93072 3.23317 3.25545 3.29398 3.30673 3.61007 4.17612 4.36719 4.56004 4.64002 4.89592 5.05423 5.09012 5.15764 5.16086 5.19856 5.22797 5.35919 5.37384 5.42285 5.43990 5.56863 5.65626 5.75826 6.01620 6.24011 6.37826 6.38151 6.44450 6.48680 6.64276 6.69335 7.01761 7.16690 7.31889 7.37761 7.40567 7.58980 7.69567 7.86202 8.14549 8.57340 8.73126 9.04095 9.41952 10.90215 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.003006 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.673091 B = 9313.653619 C = 9970.837597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.502 3.498 15 O -0.525 6.525 16 C 0.039 3.961 17 O -0.286 6.286 18 C 0.143 3.857 19 C -0.219 4.219 20 C -0.045 4.045 21 C -0.115 4.115 22 C -0.165 4.165 23 C -0.046 4.046 24 C -0.114 4.114 25 C -0.158 4.158 26 H 0.024 0.976 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.032 0.968 31 H 0.266 0.734 32 H 0.389 0.611 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 9.024 17.141 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.354 5.354 14 C 0.285 3.715 15 O -0.401 6.401 16 C -0.040 4.040 17 O -0.197 6.197 18 C 0.097 3.903 19 C -0.238 4.238 20 C -0.045 4.045 21 C -0.172 4.172 22 C -0.183 4.183 23 C -0.046 4.046 24 C -0.170 4.170 25 C -0.177 4.177 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.221 0.779 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.315 8.846 16.044 21.025 hybrid contribution 1.571 -0.104 0.437 1.634 sum -8.744 8.742 16.481 20.603 Atomic orbital electron populations 1.21849 0.98288 0.98157 1.01272 1.21949 0.92636 0.99708 1.02383 1.18826 0.94261 0.89179 0.80597 0.93169 1.21176 0.90557 1.39335 1.06416 0.92077 1.24887 0.98667 0.94744 0.95345 1.69882 1.35285 1.37365 1.09320 0.86498 0.84737 0.78325 0.77483 1.20150 1.21101 1.20174 1.46391 1.13893 1.56143 1.19002 1.19779 0.83433 0.80078 0.88181 1.90719 1.51062 1.58549 1.39814 1.22661 0.83410 0.99021 0.98930 1.86201 1.30095 1.68643 1.34786 1.19079 0.93057 0.92030 0.86136 1.21142 1.01544 1.07297 0.93812 1.19661 0.94402 0.95427 0.94991 1.20811 0.99355 1.02346 0.94673 1.20754 0.94541 1.04875 0.98156 1.19656 0.96110 0.96063 0.92754 1.20798 0.92661 1.00595 1.02977 1.20297 0.94004 1.03303 1.00099 0.95737 0.94369 0.93081 0.88171 0.94954 0.92427 0.77877 0.89666 0.89583 0.85412 0.90981 0.91410 0.91436 0.86182 0.90935 0.91422 0.91252 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.52 37.16 0.32 -2.80 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.48 11.29 55.43 0.63 -23.85 16 9 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.15 5.02 -54.93 -0.28 -14.42 16 14 C 0.50 9.96 6.47 -10.98 -0.07 9.89 16 15 O -0.52 -12.66 13.64 -14.35 -0.20 -12.85 16 16 C 0.04 0.58 5.22 36.01 0.19 0.77 16 17 O -0.29 -4.82 9.67 -39.33 -0.38 -5.20 16 18 C 0.14 2.05 6.69 -39.22 -0.26 1.79 16 19 C -0.22 -2.65 8.69 -39.43 -0.34 -2.99 16 20 C -0.04 -0.47 5.88 -104.65 -0.62 -1.09 16 21 C -0.12 -0.88 10.01 36.01 0.36 -0.52 16 22 C -0.17 -1.68 9.35 -39.56 -0.37 -2.05 16 23 C -0.05 -0.49 5.88 -104.65 -0.62 -1.11 16 24 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 25 C -0.16 -2.07 9.64 -39.43 -0.38 -2.45 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 28 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.39 6.54 8.54 -40.82 -0.35 6.19 16 33 H 0.09 1.05 7.65 -51.93 -0.40 0.65 16 34 H 0.09 1.07 7.68 -51.93 -0.40 0.67 16 35 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 42 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 43 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -31.20 352.79 -8.69 -39.89 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.63 Total: 6.03 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.13 Total: -10.23 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.35 Total: -38.27 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.58 Total: -18.05 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.20 -8.69 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546570962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.688 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds