Wall clock time and date at job start Tue Mar 31 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 H 1.08997 * 109.46769 * 305.00011 * 3 2 1 5 5 C 1.50700 * 109.46781 * 185.00265 * 3 2 1 6 6 H 1.08006 * 119.99723 * 240.00113 * 5 3 2 7 7 C 1.37878 * 120.00527 * 59.99960 * 5 3 2 8 8 N 1.31515 * 119.99461 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00209 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47170 * 60.00326 * 9 7 5 11 11 H 1.48498 * 109.46932 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47162 * 300.00069 * 9 7 5 13 13 N 1.46494 * 109.47118 * 65.00507 * 3 2 1 14 14 C 1.34784 * 119.99635 * 274.99773 * 13 3 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 3 17 17 O 1.42896 * 109.47293 * 179.97438 * 16 14 13 18 18 C 1.35900 * 116.99953 * 179.97438 * 17 16 14 19 19 C 1.38727 * 120.05906 * 359.72795 * 18 17 16 20 20 C 1.38146 * 119.94604 * 179.73893 * 19 18 17 21 21 C 1.50701 * 119.97118 * 180.27608 * 20 19 18 22 22 C 1.38264 * 120.05199 * 0.51271 * 20 19 18 23 23 C 1.38260 * 120.11546 * 359.76626 * 22 20 19 24 24 C 1.50703 * 119.97363 * 180.02562 * 23 22 20 25 25 C 1.38146 * 120.05620 * 359.97284 * 23 22 20 26 26 H 1.09002 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46957 * 299.99648 * 1 2 3 28 28 H 1.08997 * 109.47207 * 59.99863 * 1 2 3 29 29 H 1.09002 * 109.46957 * 240.00352 * 2 1 3 30 30 H 1.08997 * 109.47207 * 120.00137 * 2 1 3 31 31 H 0.96997 * 119.99851 * 179.97438 * 8 7 5 32 32 H 0.96995 * 120.00292 * 95.27206 * 13 3 2 33 33 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 34 34 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 35 35 H 1.08001 * 120.02530 * 359.97438 * 19 18 17 36 36 H 1.09005 * 109.46732 * 270.23547 * 21 20 19 37 37 H 1.08990 * 109.47240 * 30.23245 * 21 20 19 38 38 H 1.08996 * 109.46710 * 150.23762 * 21 20 19 39 39 H 1.08005 * 119.94131 * 179.73991 * 22 20 19 40 40 H 1.08995 * 109.46988 * 269.97242 * 24 23 22 41 41 H 1.08998 * 109.47311 * 29.97579 * 24 23 22 42 42 H 1.09004 * 109.46856 * 149.97687 * 24 23 22 43 43 H 1.08001 * 120.03225 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5975 0.1473 -0.2350 11 1 6.3977 0.2179 -2.6510 12 1 6.4994 2.2816 -1.3822 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3393 2.6327 0.4341 16 6 0.0366 3.3386 2.6545 17 8 -1.2885 3.8586 2.5297 18 6 -1.8034 4.5014 3.6107 19 6 -1.0509 4.6242 4.7696 20 6 -1.5745 5.2829 5.8653 21 6 -0.7552 5.4220 7.1224 22 6 -2.8515 5.8102 5.8110 23 6 -3.6057 5.6841 4.6591 24 6 -4.9970 6.2606 4.6033 25 6 -3.0846 5.0311 3.5589 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8292 -0.0611 -2.9498 32 1 2.2734 2.1266 1.9964 33 1 0.0681 2.6145 3.4687 34 1 0.7280 4.1541 2.8668 35 1 -0.0551 4.2086 4.8140 36 1 -0.9395 4.5668 7.7727 37 1 0.3029 5.4606 6.8641 38 1 -1.0367 6.3392 7.6398 39 1 -3.2607 6.3211 6.6701 40 1 -5.7145 5.5110 4.9368 41 1 -5.0550 7.1336 5.2533 42 1 -5.2278 6.5542 3.5792 43 1 -3.6743 4.9325 2.6595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546570962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:00 Heat of formation + Delta-G solvation = -85.673752 kcal Electronic energy + Delta-G solvation = -22751.128748 eV Core-core repulsion = 19374.257694 eV Total energy + Delta-G solvation = -3376.871053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46411 -40.49508 -38.67974 -36.89234 -34.46295 -34.34923 -33.02305 -32.00308 -29.91713 -28.51041 -28.06508 -27.39944 -24.98592 -22.93929 -22.36601 -21.54731 -21.11734 -19.08870 -18.65363 -17.59624 -17.45282 -17.17815 -16.87336 -16.64496 -16.01887 -15.81568 -14.98903 -14.75464 -14.67564 -14.58307 -14.08341 -13.96499 -13.90671 -13.66480 -13.51288 -13.29414 -13.17680 -12.93664 -12.78389 -12.64929 -12.64110 -12.34214 -12.19814 -12.08620 -11.82008 -11.66939 -11.58821 -11.08440 -10.72265 -10.52148 -9.70805 -9.58027 -9.13428 -8.16391 -6.34256 0.34571 0.47180 1.45409 1.47446 1.54989 1.69707 1.72090 2.40904 2.74939 2.88541 3.13324 3.70044 3.86321 3.92073 4.01113 4.11312 4.17229 4.33588 4.41433 4.47028 4.49131 4.54488 4.69232 4.73485 4.82856 4.84645 4.88070 4.97871 5.03877 5.13097 5.23420 5.32527 5.37662 5.41068 5.52158 5.56585 5.58892 5.67580 5.76607 5.85198 5.92389 6.14827 6.40746 6.72978 6.90911 7.31907 7.50811 8.88981 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.003006 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.673091 B = 9313.653619 C = 9970.837597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.697 5.697 14 C 0.497 3.503 15 O -0.575 6.575 16 C 0.051 3.949 17 O -0.321 6.321 18 C 0.115 3.885 19 C -0.226 4.226 20 C -0.048 4.048 21 C -0.114 4.114 22 C -0.165 4.165 23 C -0.048 4.048 24 C -0.113 4.113 25 C -0.184 4.184 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.023 0.977 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.408 0.592 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.148 0.852 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.885 9.891 20.561 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.587 4.587 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.187 1.187 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.348 5.348 14 C 0.283 3.717 15 O -0.455 6.455 16 C -0.027 4.027 17 O -0.234 6.234 18 C 0.070 3.930 19 C -0.245 4.245 20 C -0.048 4.048 21 C -0.170 4.170 22 C -0.183 4.183 23 C -0.048 4.048 24 C -0.169 4.169 25 C -0.203 4.203 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.161 0.839 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.166 0.834 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.497 9.730 19.524 23.792 hybrid contribution 1.224 -0.309 -0.582 1.390 sum -8.273 9.421 18.942 22.716 Atomic orbital electron populations 1.21690 0.97239 0.99180 1.00092 1.21797 0.93458 0.99144 1.01581 1.18403 0.93818 0.89142 0.81021 0.98511 1.21547 0.91161 1.39103 1.06871 0.90626 1.25792 1.03402 0.94346 0.95004 1.70048 1.37228 1.38258 1.09877 0.85405 0.78960 0.78450 0.77565 1.18731 1.21381 1.19658 1.46088 1.14734 1.55869 1.18119 1.20633 0.82441 0.79169 0.89434 1.90699 1.52417 1.60276 1.42137 1.22564 0.83691 1.00320 0.96128 1.86130 1.30828 1.69716 1.36717 1.19335 0.93895 0.93333 0.86405 1.21361 1.02092 1.07606 0.93423 1.20090 0.94858 0.94232 0.95606 1.20876 0.99192 1.03583 0.93353 1.21158 0.94385 1.04179 0.98590 1.20012 0.97439 0.95156 0.92204 1.20864 0.91061 1.01455 1.03550 1.20480 0.94166 1.04769 1.00876 0.93444 0.93986 0.95806 0.90889 0.93599 0.92579 0.75626 0.86431 0.86667 0.83851 0.89892 0.90788 0.89893 0.83428 0.89920 0.89459 0.91357 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.52 71.98 0.61 -5.14 16 2 C -0.12 -5.95 5.45 30.60 0.17 -5.78 16 3 C 0.28 14.21 2.24 44.25 0.10 14.31 16 4 H 0.00 -0.18 7.58 -2.39 -0.02 -0.20 16 5 C -0.55 -28.47 8.73 25.60 0.22 -28.25 16 6 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -52.30 11.29 21.45 0.24 -52.06 16 9 Si 0.97 41.48 29.54 68.60 2.03 43.51 16 10 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 13 N -0.70 -27.90 5.02 -446.10 -2.24 -30.14 16 14 C 0.50 19.90 6.47 87.66 0.57 20.47 16 15 O -0.58 -29.00 13.64 16.01 0.22 -28.78 16 16 C 0.05 1.46 5.22 71.24 0.37 1.84 16 17 O -0.32 -10.95 9.67 -73.39 -0.71 -11.66 16 18 C 0.12 3.27 6.69 22.51 0.15 3.42 16 19 C -0.23 -5.04 8.69 22.36 0.19 -4.84 16 20 C -0.05 -0.88 5.88 -19.88 -0.12 -0.99 16 21 C -0.11 -1.31 10.01 71.24 0.71 -0.59 16 22 C -0.17 -2.91 9.35 22.28 0.21 -2.70 16 23 C -0.05 -0.97 5.88 -19.88 -0.12 -1.09 16 24 C -0.11 -1.55 10.01 71.24 0.71 -0.84 16 25 C -0.18 -4.88 9.64 22.37 0.22 -4.66 16 26 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.04 1.87 5.65 -2.39 -0.01 1.86 16 28 H 0.02 1.18 7.85 -2.39 -0.02 1.16 16 29 H 0.07 4.03 5.95 -2.39 -0.01 4.01 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.41 13.09 8.54 -92.71 -0.79 12.29 16 33 H 0.12 2.59 7.65 -2.38 -0.02 2.58 16 34 H 0.12 2.61 7.68 -2.39 -0.02 2.59 16 35 H 0.14 2.58 6.30 -2.91 -0.02 2.56 16 36 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 38 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 39 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 42 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 43 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -71.08 352.79 4.20 -66.88 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.22 Total: 25.87 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 4.45 Total: -13.62 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -2.00 Total: -82.20 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.49 Total: -40.44 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -71.08 4.20 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546570962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.791 kcal (2) G-P(sol) polarization free energy of solvation -71.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds