Wall clock time and date at job start Tue Mar 31 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47398 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46974 * 120.00544 * 9 7 5 12 12 H 1.48508 * 109.47010 * 240.00184 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 O 1.42908 * 109.46887 * 180.02562 * 16 14 13 18 18 C 1.35899 * 116.99727 * 179.97438 * 17 16 14 19 19 C 1.38734 * 120.05955 * 359.72512 * 18 17 16 20 20 C 1.38144 * 119.94149 * 179.74547 * 19 18 17 21 21 C 1.50702 * 119.96725 * 180.27481 * 20 19 18 22 22 C 1.38262 * 120.05917 * 0.50015 * 20 19 18 23 23 C 1.38264 * 120.11099 * 359.77585 * 22 20 19 24 24 C 1.50695 * 119.97412 * 179.97438 * 23 22 20 25 25 C 1.38146 * 120.05611 * 359.97200 * 23 22 20 26 26 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 27 27 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 28 28 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 30 30 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 31 31 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 33 33 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 34 34 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 35 35 H 1.08003 * 120.02498 * 359.97438 * 19 18 17 36 36 H 1.09004 * 109.47265 * 270.22584 * 21 20 19 37 37 H 1.09001 * 109.47695 * 30.23371 * 21 20 19 38 38 H 1.09006 * 109.47186 * 150.23220 * 21 20 19 39 39 H 1.08000 * 119.94610 * 179.74553 * 22 20 19 40 40 H 1.08996 * 109.47436 * 269.97616 * 24 23 22 41 41 H 1.09004 * 109.46863 * 29.97460 * 24 23 22 42 42 H 1.09001 * 109.47586 * 149.97476 * 24 23 22 43 43 H 1.08002 * 120.02856 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.5987 1.5473 0.1947 11 1 6.3990 1.6166 2.6103 12 1 6.4970 -0.5176 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6371 -0.4322 16 6 0.0408 3.3485 -2.6505 17 8 -1.2824 3.8732 -2.5237 18 6 -1.7948 4.5218 -3.6024 19 6 -1.0376 4.6556 -4.7571 20 6 -1.5628 5.3108 -5.8540 21 6 -0.7431 5.4512 -7.1108 22 6 -2.8381 5.8420 -5.7982 23 6 -3.5927 5.7150 -4.6466 24 6 -4.9821 6.2956 -4.5890 25 6 -3.0740 5.0561 -3.5487 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8293 -0.0619 2.9495 32 1 2.2719 2.1232 -1.9977 33 1 0.7352 4.1620 -2.8606 34 1 0.0692 2.6266 -3.4666 35 1 -0.0397 4.2447 -4.7996 36 1 -0.1609 6.3715 -7.0640 37 1 -0.0693 4.5992 -7.2022 38 1 -1.4062 5.4844 -7.9753 39 1 -3.2454 6.3575 -6.6554 40 1 -4.9323 7.3217 -4.2248 41 1 -5.4219 6.2851 -5.5863 42 1 -5.5972 5.7001 -3.9144 43 1 -3.6637 4.9575 -2.6493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546570963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:04 Heat of formation + Delta-G solvation = -67.744125 kcal Electronic energy + Delta-G solvation = -22749.185655 eV Core-core repulsion = 19373.092088 eV Total energy + Delta-G solvation = -3376.093566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37477 -39.03535 -37.56162 -35.03317 -33.71717 -32.46887 -31.36047 -30.88657 -28.51333 -27.39937 -27.01566 -26.27766 -23.07653 -21.88186 -21.17941 -20.18643 -19.39915 -17.69902 -17.31899 -16.19800 -16.13931 -16.07073 -15.36330 -15.18485 -14.42480 -14.32142 -13.95368 -13.86163 -13.42744 -13.39362 -13.15204 -12.76259 -12.71246 -12.56287 -12.31336 -11.95413 -11.76646 -11.57920 -11.45708 -11.28492 -11.01920 -10.94868 -10.87369 -10.72080 -10.33315 -10.21553 -9.65103 -9.10153 -9.02430 -8.75319 -8.53665 -8.20216 -7.89917 -6.15597 -4.25389 1.19231 1.36309 2.93060 3.21448 3.25401 3.29923 3.32255 3.61010 4.17604 4.36507 4.56002 4.63998 4.89575 5.05418 5.08980 5.15583 5.15984 5.19868 5.22794 5.36014 5.37336 5.42346 5.43945 5.56834 5.65593 5.75803 6.01611 6.24008 6.37821 6.38020 6.44319 6.48675 6.64165 6.69325 7.01627 7.16647 7.31765 7.37676 7.40504 7.59153 7.69449 7.86151 8.14335 8.57266 8.73320 9.04084 9.41846 10.89802 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.003006 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.930756 B = 9311.624278 C = 9968.996262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.704 5.704 14 C 0.502 3.498 15 O -0.525 6.525 16 C 0.039 3.961 17 O -0.286 6.286 18 C 0.143 3.857 19 C -0.219 4.219 20 C -0.045 4.045 21 C -0.115 4.115 22 C -0.165 4.165 23 C -0.046 4.046 24 C -0.114 4.114 25 C -0.158 4.158 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.024 0.976 29 H 0.032 0.968 30 H 0.100 0.900 31 H 0.264 0.736 32 H 0.389 0.611 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.641 9.170 -17.114 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.354 5.354 14 C 0.285 3.715 15 O -0.402 6.402 16 C -0.040 4.040 17 O -0.197 6.197 18 C 0.097 3.903 19 C -0.238 4.238 20 C -0.045 4.045 21 C -0.172 4.172 22 C -0.183 4.183 23 C -0.046 4.046 24 C -0.170 4.170 25 C -0.177 4.177 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.262 8.994 -16.028 21.050 hybrid contribution 1.572 -0.095 -0.408 1.627 sum -8.691 8.898 -16.436 20.612 Atomic orbital electron populations 1.21846 0.98287 0.98161 1.01265 1.21945 0.92641 0.99700 1.02383 1.18840 0.94305 0.89191 0.80608 0.93153 1.21249 0.90557 1.39134 1.06380 0.91973 1.24892 0.98680 0.94771 0.95357 1.69903 1.35091 1.37497 1.09347 0.86390 0.84750 0.77790 0.78137 1.19742 1.20863 1.20849 1.46391 1.14117 1.55989 1.18925 1.19779 0.83421 0.80105 0.88167 1.90720 1.50946 1.58720 1.39767 1.22662 0.83471 0.98950 0.98937 1.86203 1.30298 1.68309 1.34917 1.19080 0.93048 0.91978 0.86195 1.21144 1.01257 1.07513 0.93883 1.19659 0.94364 0.95471 0.94984 1.20814 0.99383 1.02548 0.94440 1.20754 0.94704 1.04505 0.98365 1.19655 0.96150 0.96025 0.92751 1.20797 0.92503 1.00987 1.02744 1.20296 0.94194 1.03226 0.99991 0.93085 0.94375 0.95730 0.94951 0.88171 0.92547 0.77872 0.89582 0.89661 0.85410 0.90970 0.91419 0.91442 0.86181 0.90927 0.91426 0.91255 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.52 37.16 0.32 -2.80 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.46 7.57 -51.93 -0.39 1.06 16 5 C -0.53 -13.84 8.73 -34.44 -0.30 -14.14 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.45 11.29 55.43 0.63 -23.83 16 9 Si 0.90 20.33 29.54 -169.99 -5.02 15.30 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 13 N -0.70 -14.13 5.02 -54.93 -0.28 -14.41 16 14 C 0.50 9.95 6.48 -10.99 -0.07 9.88 16 15 O -0.52 -12.65 13.65 -14.35 -0.20 -12.85 16 16 C 0.04 0.58 5.22 36.00 0.19 0.77 16 17 O -0.29 -4.82 9.67 -39.33 -0.38 -5.20 16 18 C 0.14 2.05 6.69 -39.21 -0.26 1.79 16 19 C -0.22 -2.65 8.69 -39.43 -0.34 -2.99 16 20 C -0.04 -0.47 5.88 -104.65 -0.62 -1.09 16 21 C -0.12 -0.88 10.01 36.01 0.36 -0.52 16 22 C -0.17 -1.68 9.35 -39.56 -0.37 -2.05 16 23 C -0.05 -0.49 5.88 -104.65 -0.62 -1.11 16 24 C -0.11 -0.88 10.01 36.00 0.36 -0.52 16 25 C -0.16 -2.07 9.64 -39.43 -0.38 -2.45 16 26 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 27 H 0.04 0.84 5.66 -51.93 -0.29 0.54 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.39 6.54 8.54 -40.82 -0.35 6.19 16 33 H 0.09 1.07 7.65 -51.93 -0.40 0.67 16 34 H 0.09 1.05 7.67 -51.93 -0.40 0.65 16 35 H 0.13 1.33 6.30 -52.48 -0.33 1.00 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 42 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 43 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -31.23 352.84 -8.69 -39.92 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.64 Total: 5.96 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.13 Total: -10.22 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.35 Total: -38.24 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.58 Total: -18.05 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.23 -8.69 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546570963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.827 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds