Wall clock time and date at job start Tue Mar 31 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47398 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46974 * 120.00544 * 9 7 5 12 12 H 1.48508 * 109.47010 * 240.00184 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 O 1.42908 * 109.46887 * 180.02562 * 16 14 13 18 18 C 1.35899 * 116.99727 * 179.97438 * 17 16 14 19 19 C 1.38734 * 120.05955 * 359.72512 * 18 17 16 20 20 C 1.38144 * 119.94149 * 179.74547 * 19 18 17 21 21 C 1.50702 * 119.96725 * 180.27481 * 20 19 18 22 22 C 1.38262 * 120.05917 * 0.50015 * 20 19 18 23 23 C 1.38264 * 120.11099 * 359.77585 * 22 20 19 24 24 C 1.50695 * 119.97412 * 179.97438 * 23 22 20 25 25 C 1.38146 * 120.05611 * 359.97200 * 23 22 20 26 26 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 27 27 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 28 28 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 30 30 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 31 31 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 33 33 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 34 34 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 35 35 H 1.08003 * 120.02498 * 359.97438 * 19 18 17 36 36 H 1.09004 * 109.47265 * 270.22584 * 21 20 19 37 37 H 1.09001 * 109.47695 * 30.23371 * 21 20 19 38 38 H 1.09006 * 109.47186 * 150.23220 * 21 20 19 39 39 H 1.08000 * 119.94610 * 179.74553 * 22 20 19 40 40 H 1.08996 * 109.47436 * 269.97616 * 24 23 22 41 41 H 1.09004 * 109.46863 * 29.97460 * 24 23 22 42 42 H 1.09001 * 109.47586 * 149.97476 * 24 23 22 43 43 H 1.08002 * 120.02856 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.5987 1.5473 0.1947 11 1 6.3990 1.6166 2.6103 12 1 6.4970 -0.5176 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6371 -0.4322 16 6 0.0408 3.3485 -2.6505 17 8 -1.2824 3.8732 -2.5237 18 6 -1.7948 4.5218 -3.6024 19 6 -1.0376 4.6556 -4.7571 20 6 -1.5628 5.3108 -5.8540 21 6 -0.7431 5.4512 -7.1108 22 6 -2.8381 5.8420 -5.7982 23 6 -3.5927 5.7150 -4.6466 24 6 -4.9821 6.2956 -4.5890 25 6 -3.0740 5.0561 -3.5487 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8293 -0.0619 2.9495 32 1 2.2719 2.1232 -1.9977 33 1 0.7352 4.1620 -2.8606 34 1 0.0692 2.6266 -3.4666 35 1 -0.0397 4.2447 -4.7996 36 1 -0.1609 6.3715 -7.0640 37 1 -0.0693 4.5992 -7.2022 38 1 -1.4062 5.4844 -7.9753 39 1 -3.2454 6.3575 -6.6554 40 1 -4.9323 7.3217 -4.2248 41 1 -5.4219 6.2851 -5.5863 42 1 -5.5972 5.7001 -3.9144 43 1 -3.6637 4.9575 -2.6493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546570963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:03 Heat of formation + Delta-G solvation = -85.849353 kcal Electronic energy + Delta-G solvation = -22749.970756 eV Core-core repulsion = 19373.092088 eV Total energy + Delta-G solvation = -3376.878668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.46264 -40.49321 -38.67881 -36.89351 -34.46277 -34.34954 -33.02309 -32.00253 -29.91693 -28.51177 -28.06473 -27.39936 -24.98892 -22.93848 -22.36487 -21.54749 -21.11803 -19.08944 -18.65380 -17.60171 -17.45023 -17.17791 -16.87366 -16.64670 -16.01074 -15.81112 -14.99556 -14.74642 -14.68078 -14.59125 -14.08308 -13.96644 -13.90859 -13.66476 -13.51509 -13.29360 -13.19075 -12.90207 -12.79577 -12.69428 -12.63962 -12.34118 -12.16193 -12.07727 -11.82022 -11.66867 -11.59350 -11.06345 -10.72738 -10.53421 -9.70801 -9.58027 -9.13396 -8.16791 -6.34357 0.34585 0.47193 1.44570 1.45630 1.57186 1.69763 1.72249 2.40643 2.74953 2.88524 3.13201 3.70072 3.86354 3.92109 4.01178 4.11365 4.17258 4.33612 4.41460 4.46993 4.49168 4.54513 4.69251 4.73504 4.82816 4.84656 4.88046 4.97888 5.03912 5.13093 5.23460 5.32525 5.37669 5.41052 5.52166 5.56608 5.59304 5.67598 5.76513 5.85236 5.92367 6.14844 6.40746 6.73412 6.90859 7.31912 7.50805 8.88991 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.003006 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.930756 B = 9311.624278 C = 9968.996262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.076 0.924 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.258 1.258 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.697 5.697 14 C 0.498 3.502 15 O -0.576 6.576 16 C 0.051 3.949 17 O -0.321 6.321 18 C 0.115 3.885 19 C -0.226 4.226 20 C -0.048 4.048 21 C -0.114 4.114 22 C -0.165 4.165 23 C -0.048 4.048 24 C -0.113 4.113 25 C -0.184 4.184 26 H 0.023 0.977 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.265 0.735 32 H 0.408 0.592 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.144 0.856 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.148 0.852 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 10.059 -20.534 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.182 1.182 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.348 5.348 14 C 0.283 3.717 15 O -0.455 6.455 16 C -0.027 4.027 17 O -0.234 6.234 18 C 0.070 3.930 19 C -0.245 4.245 20 C -0.048 4.048 21 C -0.170 4.170 22 C -0.183 4.183 23 C -0.048 4.048 24 C -0.169 4.169 25 C -0.203 4.203 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.162 0.838 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.166 0.834 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.451 9.899 -19.507 23.829 hybrid contribution 1.228 -0.306 0.614 1.407 sum -8.223 9.593 -18.893 22.728 Atomic orbital electron populations 1.21687 0.97241 0.99182 1.00084 1.21793 0.93461 0.99139 1.01586 1.18417 0.93853 0.89154 0.81034 0.98483 1.21600 0.91138 1.38889 1.06790 0.90628 1.25793 1.03388 0.94394 0.95032 1.70061 1.37071 1.38370 1.09933 0.85302 0.79017 0.77802 0.78228 1.18200 1.21227 1.20494 1.46087 1.14950 1.55716 1.18044 1.20632 0.82425 0.79209 0.89409 1.90700 1.52308 1.60442 1.42091 1.22566 0.83759 1.00224 0.96155 1.86132 1.31034 1.69383 1.36845 1.19336 0.93892 0.93262 0.86472 1.21364 1.01799 1.07829 0.93493 1.20089 0.94813 0.94286 0.95598 1.20879 0.99502 1.03322 0.93306 1.21158 0.94553 1.03805 0.98796 1.20012 0.97478 0.95131 0.92189 1.20864 0.90834 1.01203 1.04031 1.20479 0.94352 1.04704 1.00760 0.95812 0.93991 0.93440 0.93578 0.90900 0.92602 0.75625 0.86670 0.86425 0.83848 0.89952 0.90753 0.89870 0.83428 0.89961 0.89441 0.91333 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.52 71.98 0.61 -5.13 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.78 16 3 C 0.28 14.16 2.24 44.25 0.10 14.26 16 4 H 0.00 -0.17 7.57 -2.39 -0.02 -0.19 16 5 C -0.55 -28.30 8.73 25.60 0.22 -28.08 16 6 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.01 0.74 5.29 84.65 0.45 1.19 16 8 N -0.92 -52.25 11.29 21.45 0.24 -52.01 16 9 Si 0.97 41.51 29.54 68.60 2.03 43.54 16 10 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 N -0.70 -27.87 5.02 -446.09 -2.24 -30.11 16 14 C 0.50 19.89 6.48 87.66 0.57 20.46 16 15 O -0.58 -28.99 13.65 16.00 0.22 -28.77 16 16 C 0.05 1.46 5.22 71.24 0.37 1.83 16 17 O -0.32 -10.95 9.67 -73.37 -0.71 -11.66 16 18 C 0.12 3.27 6.69 22.51 0.15 3.43 16 19 C -0.23 -5.04 8.69 22.37 0.19 -4.84 16 20 C -0.05 -0.88 5.88 -19.88 -0.12 -0.99 16 21 C -0.11 -1.31 10.01 71.24 0.71 -0.59 16 22 C -0.17 -2.91 9.35 22.28 0.21 -2.70 16 23 C -0.05 -0.97 5.88 -19.88 -0.12 -1.09 16 24 C -0.11 -1.55 10.01 71.23 0.71 -0.84 16 25 C -0.18 -4.88 9.64 22.37 0.22 -4.66 16 26 H 0.02 1.18 7.85 -2.39 -0.02 1.16 16 27 H 0.04 1.87 5.66 -2.39 -0.01 1.86 16 28 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 4.02 5.95 -2.39 -0.01 4.00 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.41 13.08 8.54 -92.71 -0.79 12.29 16 33 H 0.12 2.61 7.65 -2.39 -0.02 2.59 16 34 H 0.12 2.59 7.67 -2.39 -0.02 2.58 16 35 H 0.14 2.58 6.30 -2.91 -0.02 2.56 16 36 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.07 0.77 8.09 -2.39 -0.02 0.76 16 38 H 0.08 0.71 8.09 -2.38 -0.02 0.69 16 39 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 42 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 43 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -71.10 352.84 4.21 -66.90 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.21 Total: 25.65 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 4.45 Total: -13.54 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -2.00 Total: -82.12 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.49 Total: -40.43 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -71.10 4.21 -66.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546570963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.953 kcal (2) G-P(sol) polarization free energy of solvation -71.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds