Wall clock time and date at job start Tue Mar 31 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45198 * 109.47248 * 2 1 4 4 C 1.34224 * 116.99849 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00526 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99866 * 180.27115 * 4 3 2 7 7 H 1.09001 * 109.47001 * 59.73370 * 6 4 3 8 8 N 1.46904 * 109.47229 * 179.72355 * 6 4 3 9 9 C 1.46898 * 111.00257 * 209.23432 * 8 6 4 10 10 H 1.09003 * 109.46766 * 32.60837 * 9 8 6 11 11 C 1.50705 * 109.47124 * 272.60811 * 9 8 6 12 12 H 1.07996 * 119.99705 * 359.97438 * 11 9 8 13 13 C 1.37879 * 119.99642 * 180.02562 * 11 9 8 14 14 N 1.31511 * 120.00455 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99636 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47285 * 59.99710 * 15 13 11 17 17 H 1.48496 * 109.46852 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47189 * 299.99640 * 15 13 11 19 19 C 1.52999 * 109.46881 * 152.60654 * 9 8 6 20 20 C 1.52999 * 109.47258 * 295.98209 * 19 9 8 21 21 C 1.50700 * 109.47412 * 299.72990 * 6 4 3 22 22 C 1.38238 * 119.99677 * 279.72318 * 21 6 4 23 23 C 1.38233 * 119.99532 * 179.78739 * 22 21 6 24 24 C 1.38235 * 120.00213 * 0.44503 * 23 22 21 25 25 C 1.38235 * 119.99782 * 359.80680 * 24 23 22 26 26 C 1.38229 * 120.00189 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.46667 * 60.00067 * 1 2 3 28 28 H 1.08997 * 109.46959 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46387 * 299.99804 * 1 2 3 30 30 H 1.08999 * 109.47162 * 239.99727 * 2 1 3 31 31 H 1.09000 * 109.46870 * 120.00326 * 2 1 3 32 32 H 1.00901 * 110.99950 * 85.28135 * 8 6 4 33 33 H 0.96997 * 120.00645 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.47312 * 55.98970 * 19 9 8 35 35 H 1.09004 * 109.47001 * 175.98328 * 19 9 8 36 36 H 1.09004 * 109.46982 * 175.28733 * 20 19 9 37 37 H 1.08999 * 109.47125 * 295.28481 * 20 19 9 38 38 H 1.08997 * 109.46790 * 55.28921 * 20 19 9 39 39 H 1.07998 * 119.99920 * 359.97438 * 22 21 6 40 40 H 1.07999 * 119.99621 * 180.27399 * 23 22 21 41 41 H 1.07995 * 119.99878 * 179.83542 * 24 23 22 42 42 H 1.08004 * 119.99723 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.00003 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0067 7 1 3.5812 3.4670 0.8968 8 7 5.3878 2.8604 0.0128 9 6 5.9734 4.0261 0.6882 10 1 5.3084 4.3552 1.4867 11 6 6.1559 5.1436 -0.3063 12 1 5.8663 5.0019 -1.3370 13 6 6.6936 6.3466 0.0997 14 7 7.0467 6.5190 1.3547 15 14 6.9192 7.7320 -1.1328 16 1 5.6010 8.1036 -1.7066 17 1 7.5124 8.9099 -0.4503 18 1 7.8243 7.2836 -2.2215 19 6 7.3312 3.6435 1.2804 20 6 7.1343 2.5792 2.3618 21 6 3.4615 3.6765 -1.2236 22 6 4.0939 3.4633 -2.4342 23 6 3.6697 4.1381 -3.5637 24 6 2.6192 5.0328 -3.4807 25 6 1.9903 5.2497 -2.2689 26 6 2.4115 4.5716 -1.1404 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.7488 2.7666 -0.9247 33 1 7.4247 7.3654 1.6404 34 1 7.9724 3.2473 0.4931 35 1 7.7977 4.5255 1.7194 36 1 8.1066 2.2460 2.7250 37 1 6.5633 3.0022 3.1883 38 1 6.5930 1.7311 1.9426 39 1 4.9173 2.7674 -2.4982 40 1 4.1609 3.9683 -4.5104 41 1 2.2896 5.5619 -4.3625 42 1 1.1698 5.9491 -2.2040 43 1 1.9204 4.7415 -0.1936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564584693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:26 Heat of formation + Delta-G solvation = -63.634011 kcal Electronic energy + Delta-G solvation = -24213.933933 eV Core-core repulsion = 20838.018595 eV Total energy + Delta-G solvation = -3375.915338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.28424 -38.82465 -36.60812 -35.77037 -33.23837 -31.71736 -31.39332 -30.58129 -29.57912 -27.22357 -25.33647 -23.19376 -22.76141 -22.05139 -21.68115 -20.04542 -19.54707 -17.37737 -17.04796 -16.32180 -16.22356 -15.81144 -14.99420 -14.87418 -14.49789 -13.90691 -13.78218 -13.49613 -13.18284 -12.98730 -12.82291 -12.73543 -12.31464 -12.12702 -11.94707 -11.69530 -11.47542 -11.29296 -11.18938 -11.06292 -10.80288 -10.72901 -10.58270 -10.33815 -10.24890 -10.08159 -9.60172 -9.55977 -9.10618 -8.49661 -8.38514 -8.31132 -7.45686 -6.00788 -4.11660 1.70241 1.81200 2.68641 2.94006 3.29256 3.33932 3.37593 4.18770 4.40604 4.92745 4.94745 5.02645 5.08614 5.20752 5.26514 5.28247 5.31646 5.44330 5.49647 5.71682 5.74160 5.76384 5.87800 5.93761 5.97943 6.31591 6.39631 6.40717 6.54899 6.71832 6.74343 6.80767 6.85211 6.93653 7.04828 7.21317 7.36819 7.37000 7.52729 7.78202 7.97554 8.04684 8.18435 8.27712 8.52814 8.96824 9.55752 11.00649 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.006547 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.426024 B = 4275.527608 C = 5745.364335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.467 3.533 5 O -0.489 6.489 6 C 0.147 3.853 7 H 0.115 0.885 8 N -0.663 5.663 9 C 0.219 3.781 10 H 0.034 0.966 11 C -0.541 4.541 12 H 0.060 0.940 13 C 0.071 3.929 14 N -0.886 5.886 15 Si 0.885 3.115 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.105 4.105 20 C -0.142 4.142 21 C -0.081 4.081 22 C -0.102 4.102 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.093 4.093 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.340 0.660 33 H 0.261 0.739 34 H 0.032 0.968 35 H 0.093 0.907 36 H 0.025 0.975 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 -7.051 -4.704 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.308 3.692 5 O -0.374 6.374 6 C 0.034 3.966 7 H 0.133 0.867 8 N -0.295 5.295 9 C 0.112 3.888 10 H 0.052 0.948 11 C -0.580 4.580 12 H 0.079 0.921 13 C -0.132 4.132 14 N -0.524 5.524 15 Si 0.713 3.287 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.144 4.144 20 C -0.199 4.199 21 C -0.083 4.083 22 C -0.121 4.121 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.112 4.112 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.044 0.956 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.226 -7.651 -3.987 14.158 hybrid contribution 0.146 1.503 -1.310 1.999 sum -11.080 -6.148 -5.298 13.734 Atomic orbital electron populations 1.21780 0.93049 1.02500 1.03430 1.22905 0.95021 0.81172 1.02204 1.86540 1.25327 1.31426 1.84515 1.24070 0.79904 0.93001 0.72221 1.90609 1.60234 1.42591 1.44013 1.19956 0.92116 0.87024 0.97466 0.86697 1.60642 0.99476 1.45205 1.24132 1.19286 0.92374 0.83970 0.93162 0.94823 1.21821 1.42067 0.98064 0.96025 0.92141 1.24865 0.95060 0.98288 0.94959 1.69859 1.42445 1.24973 1.15152 0.86761 0.78469 0.81844 0.81625 1.20270 1.21367 1.20334 1.21499 0.98660 0.98137 0.96060 1.21745 0.98867 1.00187 0.99108 1.20119 0.95998 0.97617 0.94529 1.20877 0.99066 0.99778 0.92349 1.20978 0.97385 0.97373 0.98149 1.21032 0.96948 0.98735 0.97601 1.21018 1.00233 0.99808 0.92947 1.20934 0.96074 0.95745 0.98407 0.91594 0.90664 0.91564 0.91683 0.91558 0.83955 0.92862 0.94911 0.88896 0.95567 0.94638 0.92810 0.86211 0.86511 0.86736 0.86509 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.36 -5.64 10.14 -39.24 -0.40 -6.04 16 4 C 0.47 8.43 7.30 36.01 0.26 8.69 16 5 O -0.49 -9.88 16.18 -18.75 -0.30 -10.19 16 6 C 0.15 2.75 2.75 -70.01 -0.19 2.56 16 7 H 0.12 2.17 7.18 -51.93 -0.37 1.80 16 8 N -0.66 -13.85 4.87 -103.39 -0.50 -14.36 16 9 C 0.22 5.20 1.99 -68.86 -0.14 5.07 16 10 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 11 C -0.54 -13.84 7.91 -34.44 -0.27 -14.11 16 12 H 0.06 1.54 6.15 -52.49 -0.32 1.22 16 13 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 14 N -0.89 -24.37 11.30 55.43 0.63 -23.74 16 15 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.10 -2.49 5.44 -26.73 -0.15 -2.63 16 20 C -0.14 -2.98 9.85 37.16 0.37 -2.61 16 21 C -0.08 -1.44 3.94 -104.62 -0.41 -1.85 16 22 C -0.10 -1.77 7.85 -39.58 -0.31 -2.08 16 23 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 24 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 25 C -0.12 -1.84 10.05 -39.59 -0.40 -2.23 16 26 C -0.09 -1.54 9.67 -39.59 -0.38 -1.92 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.34 7.11 5.87 -39.29 -0.23 6.87 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 2.44 5.97 -51.93 -0.31 2.13 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 1.13 7.59 -51.93 -0.39 0.74 16 39 H 0.12 2.04 6.53 -52.49 -0.34 1.70 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 43 H 0.12 1.81 8.04 -52.49 -0.42 1.38 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -28.95 354.26 -8.72 -37.67 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.56 Total: 9.21 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.90 Total: -13.84 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.12 Total: -38.10 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.70 Total: -16.23 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.95 -8.72 -37.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564584693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.960 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds