Wall clock time and date at job start Tue Mar 31 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45198 * 109.47248 * 2 1 4 4 C 1.34224 * 116.99849 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00526 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99866 * 180.27115 * 4 3 2 7 7 H 1.09001 * 109.47001 * 59.73370 * 6 4 3 8 8 N 1.46904 * 109.47229 * 179.72355 * 6 4 3 9 9 C 1.46898 * 111.00257 * 209.23432 * 8 6 4 10 10 H 1.09003 * 109.46766 * 32.60837 * 9 8 6 11 11 C 1.50705 * 109.47124 * 272.60811 * 9 8 6 12 12 H 1.07996 * 119.99705 * 359.97438 * 11 9 8 13 13 C 1.37879 * 119.99642 * 180.02562 * 11 9 8 14 14 N 1.31511 * 120.00455 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99636 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47285 * 59.99710 * 15 13 11 17 17 H 1.48496 * 109.46852 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47189 * 299.99640 * 15 13 11 19 19 C 1.52999 * 109.46881 * 152.60654 * 9 8 6 20 20 C 1.52999 * 109.47258 * 295.98209 * 19 9 8 21 21 C 1.50700 * 109.47412 * 299.72990 * 6 4 3 22 22 C 1.38238 * 119.99677 * 279.72318 * 21 6 4 23 23 C 1.38233 * 119.99532 * 179.78739 * 22 21 6 24 24 C 1.38235 * 120.00213 * 0.44503 * 23 22 21 25 25 C 1.38235 * 119.99782 * 359.80680 * 24 23 22 26 26 C 1.38229 * 120.00189 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.46667 * 60.00067 * 1 2 3 28 28 H 1.08997 * 109.46959 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46387 * 299.99804 * 1 2 3 30 30 H 1.08999 * 109.47162 * 239.99727 * 2 1 3 31 31 H 1.09000 * 109.46870 * 120.00326 * 2 1 3 32 32 H 1.00901 * 110.99950 * 85.28135 * 8 6 4 33 33 H 0.96997 * 120.00645 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.47312 * 55.98970 * 19 9 8 35 35 H 1.09004 * 109.47001 * 175.98328 * 19 9 8 36 36 H 1.09004 * 109.46982 * 175.28733 * 20 19 9 37 37 H 1.08999 * 109.47125 * 295.28481 * 20 19 9 38 38 H 1.08997 * 109.46790 * 55.28921 * 20 19 9 39 39 H 1.07998 * 119.99920 * 359.97438 * 22 21 6 40 40 H 1.07999 * 119.99621 * 180.27399 * 23 22 21 41 41 H 1.07995 * 119.99878 * 179.83542 * 24 23 22 42 42 H 1.08004 * 119.99723 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.00003 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0067 7 1 3.5812 3.4670 0.8968 8 7 5.3878 2.8604 0.0128 9 6 5.9734 4.0261 0.6882 10 1 5.3084 4.3552 1.4867 11 6 6.1559 5.1436 -0.3063 12 1 5.8663 5.0019 -1.3370 13 6 6.6936 6.3466 0.0997 14 7 7.0467 6.5190 1.3547 15 14 6.9192 7.7320 -1.1328 16 1 5.6010 8.1036 -1.7066 17 1 7.5124 8.9099 -0.4503 18 1 7.8243 7.2836 -2.2215 19 6 7.3312 3.6435 1.2804 20 6 7.1343 2.5792 2.3618 21 6 3.4615 3.6765 -1.2236 22 6 4.0939 3.4633 -2.4342 23 6 3.6697 4.1381 -3.5637 24 6 2.6192 5.0328 -3.4807 25 6 1.9903 5.2497 -2.2689 26 6 2.4115 4.5716 -1.1404 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.7488 2.7666 -0.9247 33 1 7.4247 7.3654 1.6404 34 1 7.9724 3.2473 0.4931 35 1 7.7977 4.5255 1.7194 36 1 8.1066 2.2460 2.7250 37 1 6.5633 3.0022 3.1883 38 1 6.5930 1.7311 1.9426 39 1 4.9173 2.7674 -2.4982 40 1 4.1609 3.9683 -4.5104 41 1 2.2896 5.5619 -4.3625 42 1 1.1698 5.9491 -2.2040 43 1 1.9204 4.7415 -0.1936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564584693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:25 Heat of formation + Delta-G solvation = -78.205229 kcal Electronic energy + Delta-G solvation = -24214.565789 eV Core-core repulsion = 20838.018595 eV Total energy + Delta-G solvation = -3376.547194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67365 -40.10911 -38.10126 -37.31976 -34.92246 -33.42639 -32.52638 -31.80994 -31.05920 -28.88379 -27.01554 -24.68915 -24.09754 -23.38490 -22.90216 -21.49298 -21.32118 -18.83250 -18.68292 -17.82607 -17.48407 -17.21799 -16.76372 -16.19000 -16.01961 -15.29356 -15.14593 -14.93253 -14.73981 -14.30330 -14.18898 -13.90352 -13.61487 -13.53023 -13.41897 -13.09961 -13.03439 -12.84160 -12.78985 -12.55450 -12.46567 -12.23002 -12.04642 -11.84528 -11.69162 -11.48583 -11.46897 -11.34885 -10.98751 -10.41565 -9.73806 -9.62476 -9.16677 -8.01887 -6.18674 0.45334 0.57794 1.25211 1.41007 1.42277 1.48467 1.66084 2.44432 2.94683 3.21272 3.58050 3.71261 3.91880 4.01789 4.03673 4.13380 4.22344 4.29372 4.32971 4.36840 4.59912 4.68252 4.75900 4.77204 4.85413 4.92282 4.94490 5.09009 5.13867 5.16190 5.19133 5.41590 5.46337 5.51251 5.59561 5.60511 5.65186 5.70164 5.78612 6.08914 6.13508 6.17303 6.31121 6.65190 6.87245 6.99042 7.50915 8.97205 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.006547 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.426024 B = 4275.527608 C = 5745.364335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.360 6.360 4 C 0.476 3.524 5 O -0.516 6.516 6 C 0.147 3.853 7 H 0.107 0.893 8 N -0.662 5.662 9 C 0.229 3.771 10 H 0.007 0.993 11 C -0.541 4.541 12 H 0.060 0.940 13 C 0.026 3.974 14 N -0.912 5.912 15 Si 0.939 3.061 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.275 1.275 19 C -0.102 4.102 20 C -0.129 4.129 21 C -0.098 4.098 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.110 4.110 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.340 0.660 33 H 0.260 0.740 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.051 0.949 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.084 -6.925 -6.141 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.318 3.682 5 O -0.404 6.404 6 C 0.034 3.966 7 H 0.125 0.875 8 N -0.293 5.293 9 C 0.121 3.879 10 H 0.025 0.975 11 C -0.580 4.580 12 H 0.079 0.921 13 C -0.174 4.174 14 N -0.551 5.551 15 Si 0.766 3.234 16 H -0.200 1.200 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.141 4.141 20 C -0.186 4.186 21 C -0.100 4.100 22 C -0.141 4.141 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.128 4.128 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.160 0.840 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.765 -7.533 -5.433 15.786 hybrid contribution 0.519 1.414 -0.892 1.750 sum -12.246 -6.119 -6.325 15.080 Atomic orbital electron populations 1.21802 0.90113 1.04372 1.03643 1.23289 0.97272 0.79390 1.02273 1.86523 1.23649 1.33634 1.83836 1.23794 0.80626 0.92226 0.71553 1.90590 1.61037 1.43221 1.45513 1.19881 0.90761 0.87918 0.98016 0.87525 1.60528 1.01098 1.43748 1.23943 1.19020 0.91964 0.84586 0.92298 0.97490 1.22054 1.41135 0.98543 0.96256 0.92144 1.25502 0.95239 1.00334 0.96283 1.69980 1.43383 1.25279 1.16503 0.85902 0.78303 0.79451 0.79753 1.19985 1.21367 1.20073 1.21381 0.98287 0.97836 0.96569 1.21594 0.99897 0.99059 0.98062 1.20062 0.97214 0.98572 0.94125 1.20974 0.99425 1.00635 0.93050 1.21316 0.97684 0.97005 0.98428 1.21463 0.96069 0.98059 0.98663 1.21405 1.00707 0.99581 0.92462 1.21168 0.96112 0.95909 0.99646 0.91431 0.87924 0.91262 0.91688 0.91533 0.84028 0.93090 0.95410 0.91403 0.93615 0.94825 0.93003 0.86926 0.84254 0.83500 0.83664 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 10.29 71.98 0.74 -1.54 16 2 C 0.05 1.22 6.19 71.98 0.45 1.67 16 3 O -0.36 -11.13 10.14 -51.36 -0.52 -11.65 16 4 C 0.48 17.36 7.30 71.24 0.52 17.88 16 5 O -0.52 -21.10 16.18 21.95 0.36 -20.74 16 6 C 0.15 5.61 2.75 43.42 0.12 5.73 16 7 H 0.11 4.19 7.18 -2.39 -0.02 4.17 16 8 N -0.66 -28.31 4.87 -481.02 -2.34 -30.65 16 9 C 0.23 11.16 1.99 44.17 0.09 11.24 16 10 H 0.01 0.39 7.34 -2.39 -0.02 0.37 16 11 C -0.54 -27.96 7.91 25.60 0.20 -27.76 16 12 H 0.06 3.08 6.15 -2.91 -0.02 3.07 16 13 C 0.03 1.40 5.29 84.66 0.45 1.85 16 14 N -0.91 -50.95 11.30 21.45 0.24 -50.71 16 15 Si 0.94 42.87 29.54 68.60 2.03 44.89 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 C -0.10 -4.93 5.44 30.59 0.17 -4.76 16 20 C -0.13 -5.42 9.85 71.98 0.71 -4.71 16 21 C -0.10 -3.49 3.94 -19.87 -0.08 -3.56 16 22 C -0.12 -4.18 7.85 22.27 0.17 -4.01 16 23 C -0.13 -3.69 10.05 22.27 0.22 -3.46 16 24 C -0.12 -3.29 10.05 22.27 0.22 -3.07 16 25 C -0.12 -3.41 10.05 22.27 0.22 -3.19 16 26 C -0.11 -3.53 9.67 22.27 0.22 -3.32 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 31 H 0.07 1.58 8.13 -2.39 -0.02 1.56 16 32 H 0.34 14.53 5.87 -89.69 -0.53 14.00 16 33 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 3.64 5.97 -2.38 -0.01 3.63 16 36 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 2.19 7.59 -2.39 -0.02 2.17 16 39 H 0.11 3.90 6.53 -2.91 -0.02 3.88 16 40 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 43 H 0.13 3.77 8.04 -2.91 -0.02 3.75 16 Total: -1.00 -61.94 354.26 4.65 -57.29 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.47 Total: 32.57 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 4.42 Total: -21.00 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -2.10 Total: -81.36 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.17 Total: -32.39 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -61.94 4.65 -57.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564584693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.915 kcal (2) G-P(sol) polarization free energy of solvation -61.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds