Wall clock time and date at job start Tue Mar 31 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.46976 * 2 1 4 4 C 1.34231 * 117.00006 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99891 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00214 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47203 * 59.99981 * 6 4 3 8 8 N 1.46902 * 109.47251 * 179.97438 * 6 4 3 9 9 C 1.46907 * 110.99891 * 206.33191 * 8 6 4 10 10 H 1.08998 * 109.46745 * 322.29527 * 9 8 6 11 11 C 1.50702 * 109.47253 * 82.29621 * 9 8 6 12 12 H 1.08004 * 120.00012 * 4.71448 * 11 9 8 13 13 C 1.37879 * 119.99790 * 184.72291 * 11 9 8 14 14 N 1.31512 * 119.99709 * 195.36039 * 13 11 9 15 15 Si 1.86799 * 119.99863 * 15.35961 * 13 11 9 16 16 H 1.48502 * 109.47192 * 92.09583 * 15 13 11 17 17 H 1.48506 * 109.46739 * 212.09354 * 15 13 11 18 18 H 1.48500 * 109.47502 * 332.09454 * 15 13 11 19 19 C 1.52993 * 109.46794 * 202.29333 * 9 8 6 20 20 C 1.53005 * 109.47199 * 66.11838 * 19 9 8 21 21 C 1.50702 * 109.46930 * 299.99593 * 6 4 3 22 22 C 1.38230 * 119.99813 * 286.82073 * 21 6 4 23 23 C 1.38240 * 119.99683 * 179.78633 * 22 21 6 24 24 C 1.38239 * 119.99561 * 0.44605 * 23 22 21 25 25 C 1.38234 * 120.00363 * 359.80936 * 24 23 22 26 26 C 1.38230 * 119.99889 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.46841 * 60.00459 * 1 2 3 28 28 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46814 * 299.99957 * 1 2 3 30 30 H 1.08994 * 109.47355 * 239.99536 * 2 1 3 31 31 H 1.09000 * 109.46841 * 119.99541 * 2 1 3 32 32 H 1.00893 * 111.00494 * 82.37077 * 8 6 4 33 33 H 0.97002 * 119.99836 * 179.97438 * 14 13 11 34 34 H 1.08996 * 109.47413 * 306.11802 * 19 9 8 35 35 H 1.09000 * 109.47260 * 186.11249 * 19 9 8 36 36 H 1.09004 * 109.47121 * 173.93018 * 20 19 9 37 37 H 1.09004 * 109.47323 * 53.93233 * 20 19 9 38 38 H 1.08993 * 109.46970 * 293.93237 * 20 19 9 39 39 H 1.07992 * 120.00496 * 0.02562 * 22 21 6 40 40 H 1.07996 * 120.00194 * 180.27061 * 23 22 21 41 41 H 1.08003 * 119.99636 * 179.83410 * 24 23 22 42 42 H 1.08001 * 119.99618 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.99885 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5851 3.4698 0.8888 8 7 5.3877 2.8605 -0.0010 9 6 5.9777 4.0608 0.6068 10 1 5.3939 4.9363 0.3227 11 6 5.9724 3.9185 2.1071 12 1 5.6417 2.9959 2.5609 13 6 6.3895 4.9663 2.9003 14 7 6.6745 4.7588 4.1673 15 14 6.5497 6.6804 2.1754 16 1 5.2781 7.4218 2.3720 17 1 7.6545 7.4038 2.8547 18 1 6.8437 6.5784 0.7234 19 6 7.4171 4.2262 0.1154 20 6 7.4127 4.5226 -1.3857 21 6 3.4559 3.6727 -1.2317 22 6 3.9813 3.3506 -2.4690 23 6 3.5517 4.0221 -3.5984 24 6 2.6033 5.0219 -3.4891 25 6 2.0817 5.3476 -2.2510 26 6 2.5081 4.6731 -1.1223 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.7424 2.7163 -0.9345 33 1 6.9683 5.4959 4.7253 34 1 7.9729 3.3074 0.3026 35 1 7.8901 5.0517 0.6473 36 1 8.4274 4.7467 -1.7148 37 1 6.7687 5.3792 -1.5850 38 1 7.0389 3.6533 -1.9266 39 1 4.7247 2.5718 -2.5540 40 1 3.9590 3.7676 -4.5657 41 1 2.2696 5.5484 -4.3711 42 1 1.3405 6.1285 -2.1658 43 1 2.1009 4.9278 -0.1550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564584705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:29 Heat of formation + Delta-G solvation = -58.301720 kcal Electronic energy + Delta-G solvation = -24173.040142 eV Core-core repulsion = 20797.356029 eV Total energy + Delta-G solvation = -3375.684113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34746 -39.02677 -36.83526 -35.92742 -33.33601 -31.99184 -31.52848 -30.83971 -29.94902 -27.44802 -25.94468 -23.20059 -22.69541 -22.34498 -21.81432 -20.19410 -19.68795 -17.48688 -16.93824 -16.68736 -16.27136 -16.01678 -15.22110 -15.16621 -14.43642 -14.23554 -13.95291 -13.79210 -13.31505 -13.24727 -12.90391 -12.77051 -12.69471 -12.35844 -12.18452 -11.99644 -11.76183 -11.68357 -11.45235 -11.19914 -10.89759 -10.87554 -10.63691 -10.32508 -10.30393 -10.22376 -9.90206 -9.54113 -9.25011 -8.83166 -8.64320 -8.49912 -7.54549 -6.08849 -4.02550 1.38965 1.49498 2.69929 2.92068 3.25618 3.35931 3.38400 3.87963 4.40751 4.79605 4.87525 4.97063 4.98695 5.04403 5.05846 5.18273 5.20242 5.29864 5.32123 5.57692 5.63367 5.74741 5.75955 5.79541 5.83959 5.90841 5.95837 6.03645 6.04674 6.14202 6.51514 6.52510 6.56777 6.61912 6.65495 6.69382 6.76367 6.91338 7.06838 7.17303 7.70835 7.78708 8.07279 8.27898 8.68258 9.07737 9.56654 11.04197 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.006368 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.041300 B = 4395.944563 C = 5389.316116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.472 3.528 5 O -0.486 6.486 6 C 0.144 3.856 7 H 0.131 0.869 8 N -0.648 5.648 9 C 0.198 3.802 10 H 0.002 0.998 11 C -0.509 4.509 12 H 0.080 0.920 13 C 0.076 3.924 14 N -0.890 5.890 15 Si 0.856 3.144 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.253 1.253 19 C -0.127 4.127 20 C -0.155 4.155 21 C -0.102 4.102 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.120 4.120 26 C -0.096 4.096 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.330 0.670 33 H 0.263 0.737 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.785 -1.888 -14.342 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.312 3.688 5 O -0.371 6.371 6 C 0.032 3.968 7 H 0.149 0.851 8 N -0.280 5.280 9 C 0.090 3.910 10 H 0.019 0.981 11 C -0.547 4.547 12 H 0.098 0.902 13 C -0.127 4.127 14 N -0.527 5.527 15 Si 0.683 3.317 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.177 1.177 19 C -0.165 4.165 20 C -0.213 4.213 21 C -0.104 4.104 22 C -0.131 4.131 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.138 4.138 26 C -0.114 4.114 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.150 0.850 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.439 -2.515 -13.562 17.298 hybrid contribution 0.059 1.494 -0.871 1.730 sum -10.380 -1.021 -14.433 17.808 Atomic orbital electron populations 1.21780 0.93028 1.02530 1.03399 1.22917 0.95018 0.81051 1.02304 1.86520 1.25173 1.31558 1.84564 1.23747 0.79998 0.92675 0.72352 1.90623 1.60212 1.42461 1.43810 1.20002 0.91279 0.88143 0.97424 0.85113 1.60248 1.00109 1.42548 1.25076 1.19587 0.90229 0.85643 0.95538 0.98073 1.20976 1.44090 1.01707 0.87925 0.90183 1.24888 0.94505 0.98534 0.94757 1.69977 1.44282 1.31754 1.06703 0.87309 0.77974 0.85739 0.80700 1.20687 1.21342 1.17712 1.22069 0.99671 1.01771 0.92982 1.21923 1.00473 1.00394 0.98513 1.20466 0.97404 0.97523 0.94978 1.20984 0.99913 0.99998 0.92223 1.21037 0.97865 0.96671 0.98136 1.21114 0.97600 0.97898 0.97481 1.21125 1.00198 0.99878 0.92634 1.21130 0.96074 0.95145 0.99075 0.91709 0.90619 0.91468 0.91721 0.91356 0.84992 0.92711 0.91591 0.91866 0.93665 0.93630 0.93589 0.86132 0.86204 0.86357 0.86076 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.05 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.36 -5.86 10.14 -39.26 -0.40 -6.26 16 4 C 0.47 8.84 7.22 36.00 0.26 9.10 16 5 O -0.49 -10.30 16.18 -18.75 -0.30 -10.60 16 6 C 0.14 2.70 2.54 -70.02 -0.18 2.52 16 7 H 0.13 2.62 7.31 -51.93 -0.38 2.24 16 8 N -0.65 -13.48 5.53 -103.39 -0.57 -14.05 16 9 C 0.20 4.53 1.40 -68.86 -0.10 4.43 16 10 H 0.00 0.04 6.36 -51.93 -0.33 -0.29 16 11 C -0.51 -14.05 8.79 -34.44 -0.30 -14.36 16 12 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 13 C 0.08 2.13 5.32 -17.82 -0.09 2.03 16 14 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 15 Si 0.86 20.67 25.78 -169.99 -4.38 16.28 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.25 -5.73 5.51 56.52 0.31 -5.42 16 19 C -0.13 -2.70 4.79 -26.73 -0.13 -2.82 16 20 C -0.16 -2.69 9.63 37.16 0.36 -2.33 16 21 C -0.10 -1.63 4.59 -104.62 -0.48 -2.11 16 22 C -0.11 -1.64 8.92 -39.58 -0.35 -2.00 16 23 C -0.12 -1.48 10.05 -39.58 -0.40 -1.87 16 24 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 25 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 26 C -0.10 -1.40 9.67 -39.58 -0.38 -1.78 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 31 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 32 H 0.33 6.22 4.59 -39.30 -0.18 6.04 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 1.42 4.99 -51.93 -0.26 1.16 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.72 6.69 -51.93 -0.35 0.37 16 39 H 0.12 1.72 6.93 -52.49 -0.36 1.36 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.13 1.75 7.99 -52.48 -0.42 1.33 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -31.88 351.31 -8.14 -40.02 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.58 Total: 8.31 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -1.98 Total: -12.94 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.20 Total: -40.12 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.70 Total: -16.86 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.38 Total: 16.28 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.88 -8.14 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564584705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.283 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds