Wall clock time and date at job start Tue Mar 31 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47076 * 2 1 4 4 C 1.34229 * 116.99657 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00198 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99994 * 179.97438 * 4 3 2 7 7 H 1.09008 * 109.47206 * 300.00839 * 6 4 3 8 8 N 1.46898 * 109.47229 * 180.02562 * 6 4 3 9 9 C 1.46909 * 110.99783 * 157.61769 * 8 6 4 10 10 H 1.08999 * 109.47032 * 33.84883 * 9 8 6 11 11 C 1.50697 * 109.46846 * 153.85136 * 9 8 6 12 12 H 1.07997 * 120.00097 * 359.97438 * 11 9 8 13 13 C 1.37879 * 119.99722 * 180.02562 * 11 9 8 14 14 N 1.31510 * 119.99915 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99743 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47492 * 59.99519 * 15 13 11 17 17 H 1.48500 * 109.46956 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47157 * 299.99362 * 15 13 11 19 19 C 1.52993 * 109.47185 * 273.85009 * 9 8 6 20 20 C 1.53000 * 109.47068 * 294.90895 * 19 9 8 21 21 C 1.50700 * 109.46812 * 60.00328 * 6 4 3 22 22 C 1.38235 * 120.00054 * 79.73198 * 21 6 4 23 23 C 1.38241 * 119.99874 * 179.81250 * 22 21 6 24 24 C 1.38238 * 119.99974 * 0.38965 * 23 22 21 25 25 C 1.38235 * 120.00074 * 359.86083 * 24 23 22 26 26 C 1.38238 * 119.99973 * 359.95290 * 25 24 23 27 27 H 1.09004 * 109.47645 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47340 * 300.00019 * 1 2 3 29 29 H 1.09001 * 109.47254 * 59.99426 * 1 2 3 30 30 H 1.09003 * 109.46850 * 240.00120 * 2 1 3 31 31 H 1.09001 * 109.47254 * 120.00574 * 2 1 3 32 32 H 1.00894 * 110.99763 * 33.66667 * 8 6 4 33 33 H 0.97010 * 119.99343 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.47322 * 54.90639 * 19 9 8 35 35 H 1.08996 * 109.47258 * 174.90408 * 19 9 8 36 36 H 1.08998 * 109.46983 * 298.07714 * 20 19 9 37 37 H 1.08993 * 109.47213 * 58.08497 * 20 19 9 38 38 H 1.09002 * 109.46954 * 178.08198 * 20 19 9 39 39 H 1.07997 * 120.00163 * 359.97438 * 22 21 6 40 40 H 1.07997 * 119.99649 * 180.22489 * 23 22 21 41 41 H 1.07999 * 119.99464 * 179.83718 * 24 23 22 42 42 H 1.07999 * 119.99708 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.99640 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5851 3.4691 -0.8905 8 7 5.3877 2.8604 0.0001 9 6 5.9799 4.0991 -0.5226 10 1 5.3568 4.9474 -0.2393 11 6 7.3617 4.2766 0.0518 12 1 7.7600 3.5430 0.7370 13 6 8.1170 5.3762 -0.2965 14 7 7.6317 6.2698 -1.1305 15 14 9.8302 5.5959 0.4150 16 1 10.6789 4.4405 0.0281 17 1 10.4287 6.8481 -0.1133 18 1 9.7450 5.6738 1.8955 19 6 6.0682 4.0180 -2.0478 20 6 7.0429 2.9072 -2.4439 21 6 3.4558 3.6737 1.2299 22 6 4.0751 3.4495 2.4452 23 6 3.6511 4.1279 3.5726 24 6 2.6024 5.0245 3.4862 25 6 1.9797 5.2448 2.2719 26 6 2.4062 4.5693 1.1437 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.7077 2.0584 -0.5217 33 1 8.1634 7.0433 -1.3759 34 1 5.0822 3.7994 -2.4578 35 1 6.4227 4.9702 -2.4424 36 1 8.0366 3.1429 -2.0630 37 1 6.7065 1.9607 -2.0208 38 1 7.0800 2.8267 -3.5303 39 1 4.8920 2.7464 2.5134 40 1 4.1374 3.9554 4.5213 41 1 2.2695 5.5525 4.3675 42 1 1.1601 5.9450 2.2045 43 1 1.9194 4.7412 0.1952 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564584707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:34 Heat of formation + Delta-G solvation = -62.918957 kcal Electronic energy + Delta-G solvation = -24022.918490 eV Core-core repulsion = 20647.034159 eV Total energy + Delta-G solvation = -3375.884331 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47784 -38.75852 -36.92491 -35.97432 -33.28231 -31.78058 -31.26398 -30.49651 -29.51763 -27.10828 -25.30659 -23.37194 -23.16374 -22.10486 -21.76995 -20.35143 -19.09999 -17.61734 -16.79610 -16.66398 -16.18661 -15.55155 -15.16074 -14.75711 -14.58960 -13.99708 -13.89861 -13.42496 -13.10744 -12.98379 -12.91112 -12.77111 -12.40072 -12.29366 -12.18019 -11.88031 -11.77669 -11.59222 -10.93756 -10.84177 -10.75082 -10.64122 -10.54937 -10.48624 -10.24422 -10.04003 -9.86545 -9.59138 -9.02464 -8.48607 -8.36275 -8.30308 -7.42837 -5.97359 -3.98248 1.67423 1.85044 2.44939 2.80136 3.35962 3.39968 3.43712 4.18221 4.45283 4.83874 4.85270 4.95949 5.05838 5.13838 5.19630 5.34205 5.35428 5.39341 5.52571 5.61482 5.66520 5.70830 5.85525 5.91367 6.04315 6.30806 6.32013 6.36403 6.47469 6.53128 6.55568 6.80962 6.86870 6.91452 7.03228 7.21631 7.21982 7.40328 7.47688 7.65989 7.85757 7.96536 8.22426 8.44811 8.54027 9.05974 9.64757 11.10070 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.005533 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.873790 B = 5058.947732 C = 6205.546246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.468 3.532 5 O -0.498 6.498 6 C 0.137 3.863 7 H 0.080 0.920 8 N -0.664 5.664 9 C 0.219 3.781 10 H 0.039 0.961 11 C -0.486 4.486 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.278 1.278 19 C -0.148 4.148 20 C -0.130 4.130 21 C -0.066 4.066 22 C -0.070 4.070 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.102 4.102 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.344 0.656 33 H 0.260 0.740 34 H 0.009 0.991 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.023 0.977 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.799 -6.660 3.310 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.272 6.272 4 C 0.310 3.690 5 O -0.384 6.384 6 C 0.025 3.975 7 H 0.097 0.903 8 N -0.300 5.300 9 C 0.112 3.888 10 H 0.057 0.943 11 C -0.525 4.525 12 H 0.081 0.919 13 C -0.142 4.142 14 N -0.535 5.535 15 Si 0.723 3.277 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.187 4.187 20 C -0.187 4.187 21 C -0.067 4.067 22 C -0.088 4.088 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.121 4.121 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.167 0.833 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.042 0.958 39 H 0.150 0.850 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.481 -6.642 3.866 15.517 hybrid contribution 0.839 0.035 -0.706 1.097 sum -12.642 -6.607 3.160 14.610 Atomic orbital electron populations 1.21786 0.92821 1.02657 1.03521 1.22975 0.95222 0.80796 1.02413 1.86539 1.24753 1.31778 1.84118 1.23925 0.80383 0.92795 0.71873 1.90632 1.60256 1.42663 1.44895 1.20016 0.92827 0.87564 0.97072 0.90302 1.60949 0.99222 1.08660 1.61145 1.19292 0.95148 0.85451 0.88930 0.94347 1.20922 0.98603 1.06954 1.25982 0.91946 1.24873 0.98128 0.95866 0.95308 1.69867 1.37393 1.11872 1.34375 0.86618 0.84497 0.77181 0.79440 1.20382 1.21543 1.20338 1.22152 0.94968 1.01100 1.00522 1.21579 1.02029 0.97644 0.97454 1.19386 0.95955 0.97527 0.93840 1.21089 0.97778 0.98591 0.91335 1.21122 0.97449 0.97618 0.98550 1.21071 0.96833 0.98563 0.97476 1.20953 1.00595 1.00349 0.92870 1.20963 0.96401 0.96168 0.98542 0.90496 0.91460 0.91544 0.91457 0.91377 0.83344 0.93054 0.97266 0.88533 0.91383 0.95011 0.95781 0.84976 0.86436 0.86718 0.86507 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 37.16 0.38 -0.91 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.36 -5.37 10.14 -39.25 -0.40 -5.76 16 4 C 0.47 8.22 7.26 36.01 0.26 8.48 16 5 O -0.50 -9.69 15.45 -18.75 -0.29 -9.98 16 6 C 0.14 2.53 2.55 -70.02 -0.18 2.35 16 7 H 0.08 1.44 7.04 -51.92 -0.37 1.07 16 8 N -0.66 -14.12 5.15 -103.39 -0.53 -14.65 16 9 C 0.22 5.28 2.13 -68.86 -0.15 5.13 16 10 H 0.04 1.03 7.52 -51.93 -0.39 0.64 16 11 C -0.49 -12.92 7.38 -34.44 -0.25 -13.17 16 12 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 13 C 0.06 1.59 5.26 -17.82 -0.09 1.49 16 14 N -0.90 -24.88 11.38 55.43 0.63 -24.25 16 15 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 C -0.15 -3.41 5.49 -26.73 -0.15 -3.56 16 20 C -0.13 -2.79 9.40 37.16 0.35 -2.44 16 21 C -0.07 -1.18 4.39 -104.62 -0.46 -1.64 16 22 C -0.07 -1.25 9.32 -39.58 -0.37 -1.62 16 23 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 24 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 25 C -0.13 -1.85 10.05 -39.58 -0.40 -2.24 16 26 C -0.10 -1.62 9.67 -39.58 -0.38 -2.00 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 31 H 0.07 0.81 8.13 -51.93 -0.42 0.38 16 32 H 0.34 7.42 5.33 -39.29 -0.21 7.21 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.01 0.19 7.43 -51.93 -0.39 -0.20 16 35 H 0.10 2.49 6.22 -51.93 -0.32 2.16 16 36 H 0.07 1.59 7.12 -51.93 -0.37 1.22 16 37 H 0.03 0.64 6.36 -51.93 -0.33 0.31 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.13 2.51 7.73 -52.49 -0.41 2.10 16 40 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.12 1.67 8.04 -52.49 -0.42 1.24 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -29.01 354.38 -8.82 -37.83 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.55 Total: 8.90 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -2.00 Total: -13.71 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.10 Total: -38.90 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.69 Total: -15.75 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.01 -8.82 -37.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564584707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.086 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds