Wall clock time and date at job start Tue Mar 31 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47076 * 2 1 4 4 C 1.34229 * 116.99657 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00198 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99994 * 179.97438 * 4 3 2 7 7 H 1.09008 * 109.47206 * 300.00839 * 6 4 3 8 8 N 1.46898 * 109.47229 * 180.02562 * 6 4 3 9 9 C 1.46909 * 110.99783 * 157.61769 * 8 6 4 10 10 H 1.08999 * 109.47032 * 33.84883 * 9 8 6 11 11 C 1.50697 * 109.46846 * 153.85136 * 9 8 6 12 12 H 1.07997 * 120.00097 * 359.97438 * 11 9 8 13 13 C 1.37879 * 119.99722 * 180.02562 * 11 9 8 14 14 N 1.31510 * 119.99915 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99743 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47492 * 59.99519 * 15 13 11 17 17 H 1.48500 * 109.46956 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47157 * 299.99362 * 15 13 11 19 19 C 1.52993 * 109.47185 * 273.85009 * 9 8 6 20 20 C 1.53000 * 109.47068 * 294.90895 * 19 9 8 21 21 C 1.50700 * 109.46812 * 60.00328 * 6 4 3 22 22 C 1.38235 * 120.00054 * 79.73198 * 21 6 4 23 23 C 1.38241 * 119.99874 * 179.81250 * 22 21 6 24 24 C 1.38238 * 119.99974 * 0.38965 * 23 22 21 25 25 C 1.38235 * 120.00074 * 359.86083 * 24 23 22 26 26 C 1.38238 * 119.99973 * 359.95290 * 25 24 23 27 27 H 1.09004 * 109.47645 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47340 * 300.00019 * 1 2 3 29 29 H 1.09001 * 109.47254 * 59.99426 * 1 2 3 30 30 H 1.09003 * 109.46850 * 240.00120 * 2 1 3 31 31 H 1.09001 * 109.47254 * 120.00574 * 2 1 3 32 32 H 1.00894 * 110.99763 * 33.66667 * 8 6 4 33 33 H 0.97010 * 119.99343 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.47322 * 54.90639 * 19 9 8 35 35 H 1.08996 * 109.47258 * 174.90408 * 19 9 8 36 36 H 1.08998 * 109.46983 * 298.07714 * 20 19 9 37 37 H 1.08993 * 109.47213 * 58.08497 * 20 19 9 38 38 H 1.09002 * 109.46954 * 178.08198 * 20 19 9 39 39 H 1.07997 * 120.00163 * 359.97438 * 22 21 6 40 40 H 1.07997 * 119.99649 * 180.22489 * 23 22 21 41 41 H 1.07999 * 119.99464 * 179.83718 * 24 23 22 42 42 H 1.07999 * 119.99708 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.99640 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5851 3.4691 -0.8905 8 7 5.3877 2.8604 0.0001 9 6 5.9799 4.0991 -0.5226 10 1 5.3568 4.9474 -0.2393 11 6 7.3617 4.2766 0.0518 12 1 7.7600 3.5430 0.7370 13 6 8.1170 5.3762 -0.2965 14 7 7.6317 6.2698 -1.1305 15 14 9.8302 5.5959 0.4150 16 1 10.6789 4.4405 0.0281 17 1 10.4287 6.8481 -0.1133 18 1 9.7450 5.6738 1.8955 19 6 6.0682 4.0180 -2.0478 20 6 7.0429 2.9072 -2.4439 21 6 3.4558 3.6737 1.2299 22 6 4.0751 3.4495 2.4452 23 6 3.6511 4.1279 3.5726 24 6 2.6024 5.0245 3.4862 25 6 1.9797 5.2448 2.2719 26 6 2.4062 4.5693 1.1437 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.7077 2.0584 -0.5217 33 1 8.1634 7.0433 -1.3759 34 1 5.0822 3.7994 -2.4578 35 1 6.4227 4.9702 -2.4424 36 1 8.0366 3.1429 -2.0630 37 1 6.7065 1.9607 -2.0208 38 1 7.0800 2.8267 -3.5303 39 1 4.8920 2.7464 2.5134 40 1 4.1374 3.9554 4.5213 41 1 2.2695 5.5525 4.3675 42 1 1.1601 5.9450 2.2045 43 1 1.9194 4.7412 0.1952 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564584707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:34 Heat of formation + Delta-G solvation = -77.868811 kcal Electronic energy + Delta-G solvation = -24023.566764 eV Core-core repulsion = 20647.034159 eV Total energy + Delta-G solvation = -3376.532606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.83429 -40.01357 -38.41993 -37.49928 -34.96024 -33.29420 -32.50256 -31.71505 -31.02999 -28.80410 -27.00680 -25.20789 -24.21077 -23.33781 -22.97442 -21.84934 -20.79152 -19.07313 -18.24256 -18.06206 -17.51842 -17.18512 -16.74937 -16.30262 -16.01175 -15.27374 -15.19813 -15.05111 -14.57021 -14.48080 -14.17006 -14.03584 -13.84285 -13.62506 -13.48296 -13.44650 -12.91865 -12.81726 -12.68602 -12.51952 -12.46517 -12.11577 -11.95118 -11.91014 -11.75103 -11.56035 -11.54756 -11.44834 -11.00324 -10.41178 -9.70516 -9.58659 -9.14564 -8.04626 -6.11305 0.44044 0.62407 1.06497 1.44813 1.45177 1.51700 1.57531 2.47008 2.94722 3.25304 3.49549 3.68544 3.81538 3.98681 4.06178 4.08027 4.26609 4.29225 4.32662 4.38470 4.49794 4.56910 4.70054 4.72987 4.80953 4.82227 4.92009 5.05776 5.09243 5.13011 5.24170 5.29976 5.36765 5.38627 5.62497 5.64956 5.69878 5.71691 5.74649 5.86551 6.19667 6.28249 6.55161 6.60140 6.73172 6.96655 7.54951 9.01176 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.005533 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.873790 B = 5058.947732 C = 6205.546246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.353 6.353 4 C 0.476 3.524 5 O -0.523 6.523 6 C 0.137 3.863 7 H 0.081 0.919 8 N -0.667 5.667 9 C 0.231 3.769 10 H 0.009 0.991 11 C -0.497 4.497 12 H 0.049 0.951 13 C 0.019 3.981 14 N -0.917 5.917 15 Si 0.948 3.052 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.142 4.142 20 C -0.121 4.121 21 C -0.087 4.087 22 C -0.097 4.097 23 C -0.136 4.136 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.114 4.114 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.341 0.659 33 H 0.259 0.741 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.040 0.960 38 H 0.046 0.954 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.420 -6.606 3.892 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.269 6.269 4 C 0.319 3.681 5 O -0.412 6.412 6 C 0.025 3.975 7 H 0.098 0.902 8 N -0.302 5.302 9 C 0.123 3.877 10 H 0.027 0.973 11 C -0.535 4.535 12 H 0.067 0.933 13 C -0.179 4.179 14 N -0.557 5.557 15 Si 0.775 3.225 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.203 1.203 19 C -0.182 4.182 20 C -0.178 4.178 21 C -0.088 4.088 22 C -0.116 4.116 23 C -0.154 4.154 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.132 4.132 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.163 0.837 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.127 0.873 40 H 0.153 0.847 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.127 -6.596 4.453 17.093 hybrid contribution 1.225 -0.008 -0.845 1.488 sum -13.903 -6.604 3.608 15.809 Atomic orbital electron populations 1.21811 0.89889 1.04496 1.03763 1.23367 0.97456 0.79037 1.02502 1.86522 1.22991 1.33974 1.83414 1.23646 0.81166 0.91973 0.71317 1.90614 1.61026 1.43212 1.46306 1.19977 0.91025 0.88654 0.97811 0.90195 1.60773 1.01394 1.07231 1.60814 1.18958 0.93598 0.85581 0.89517 0.97348 1.21109 0.99874 1.06745 1.25809 0.93266 1.25485 1.01120 0.95679 0.95635 1.69982 1.38396 1.12135 1.35185 0.85769 0.80918 0.77198 0.78655 1.19944 1.21109 1.20287 1.22016 0.96162 1.00341 0.99657 1.21463 1.00148 0.97321 0.98867 1.19441 0.97293 0.98767 0.93317 1.21058 0.98177 0.99669 0.92677 1.21393 0.98032 0.97525 0.98470 1.21494 0.95669 0.97613 0.98806 1.21390 1.00920 0.99889 0.92170 1.21221 0.96032 0.95881 1.00056 0.87823 0.91368 0.91106 0.91189 0.91596 0.83724 0.93159 0.95583 0.91179 0.93673 0.94081 0.93536 0.87321 0.84668 0.83249 0.83146 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 10.29 71.98 0.74 -1.38 16 2 C 0.05 1.12 6.19 71.98 0.45 1.57 16 3 O -0.35 -10.47 10.14 -51.41 -0.52 -10.99 16 4 C 0.48 16.89 7.26 71.24 0.52 17.41 16 5 O -0.52 -20.69 15.45 21.96 0.34 -20.35 16 6 C 0.14 5.16 2.55 43.42 0.11 5.27 16 7 H 0.08 2.97 7.04 -2.38 -0.02 2.95 16 8 N -0.67 -29.27 5.15 -481.03 -2.48 -31.75 16 9 C 0.23 11.48 2.13 44.16 0.09 11.57 16 10 H 0.01 0.47 7.52 -2.39 -0.02 0.46 16 11 C -0.50 -27.09 7.38 25.60 0.19 -26.90 16 12 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 13 C 0.02 1.06 5.26 84.66 0.45 1.50 16 14 N -0.92 -51.75 11.38 21.45 0.24 -51.51 16 15 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 C -0.14 -6.64 5.49 30.59 0.17 -6.48 16 20 C -0.12 -5.18 9.40 71.98 0.68 -4.50 16 21 C -0.09 -3.15 4.39 -19.86 -0.09 -3.24 16 22 C -0.10 -3.57 9.32 22.27 0.21 -3.36 16 23 C -0.14 -4.12 10.05 22.27 0.22 -3.89 16 24 C -0.12 -3.02 10.05 22.27 0.22 -2.80 16 25 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 26 C -0.11 -3.48 9.67 22.27 0.22 -3.27 16 27 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 31 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 32 H 0.34 15.08 5.33 -89.70 -0.48 14.60 16 33 H 0.26 14.10 8.31 -92.70 -0.77 13.33 16 34 H 0.03 1.10 7.43 -2.39 -0.02 1.08 16 35 H 0.07 3.68 6.22 -2.39 -0.01 3.66 16 36 H 0.04 2.13 7.12 -2.39 -0.02 2.11 16 37 H 0.04 1.66 6.36 -2.39 -0.02 1.65 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.11 4.38 7.73 -2.91 -0.02 4.36 16 40 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 42 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 43 H 0.13 3.55 8.04 -2.91 -0.02 3.53 16 Total: -1.00 -63.50 354.38 4.52 -58.98 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.52 Total: 31.03 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 4.39 Total: -21.53 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -2.23 Total: -83.25 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.18 Total: -31.34 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -63.50 4.52 -58.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564584707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.887 kcal (2) G-P(sol) polarization free energy of solvation -63.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds