Wall clock time and date at job start Tue Mar 31 2020 06:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 H 1.08999 * 109.47025 * 57.30391 * 3 2 1 5 5 C 1.50700 * 109.47079 * 177.30258 * 3 2 1 6 6 H 1.08000 * 120.00283 * 114.38771 * 5 3 2 7 7 C 1.37877 * 120.00228 * 294.38184 * 5 3 2 8 8 N 1.31510 * 120.00373 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99691 * 359.97438 * 7 5 3 10 10 H 1.48510 * 109.47056 * 90.00405 * 9 7 5 11 11 H 1.48502 * 109.47355 * 209.99822 * 9 7 5 12 12 H 1.48496 * 109.47412 * 330.00171 * 9 7 5 13 13 N 1.46903 * 109.47214 * 297.30429 * 3 2 1 14 14 C 1.46896 * 110.99772 * 137.60899 * 13 3 2 15 15 H 1.08995 * 109.47916 * 355.59537 * 14 13 3 16 16 C 1.50697 * 109.47195 * 115.59912 * 14 13 3 17 17 O 1.20832 * 120.00052 * 23.44568 * 16 14 13 18 18 O 1.34228 * 120.00161 * 203.44696 * 16 14 13 19 19 C 1.45203 * 117.00037 * 179.97438 * 18 16 14 20 20 C 1.50699 * 109.46917 * 235.59547 * 14 13 3 21 21 C 1.38255 * 120.00119 * 340.00166 * 20 14 13 22 22 C 1.38213 * 120.00286 * 180.02562 * 21 20 14 23 23 C 1.38260 * 120.00016 * 359.97438 * 22 21 20 24 24 C 1.38213 * 119.99536 * 359.97438 * 23 22 21 25 25 C 1.38217 * 120.00181 * 159.73387 * 20 14 13 26 26 C 1.50693 * 119.99760 * 359.97438 * 25 20 14 27 27 H 1.08995 * 109.47275 * 185.02623 * 1 2 3 28 28 H 1.09004 * 109.47141 * 305.02240 * 1 2 3 29 29 H 1.09002 * 109.47194 * 65.02046 * 1 2 3 30 30 H 1.08997 * 109.47324 * 240.00068 * 2 1 3 31 31 H 1.08996 * 109.47141 * 119.99808 * 2 1 3 32 32 H 0.96996 * 120.00285 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99332 * 261.56082 * 13 3 2 34 34 H 1.09008 * 109.46992 * 60.00641 * 19 18 16 35 35 H 1.09001 * 109.47173 * 179.97438 * 19 18 16 36 36 H 1.08992 * 109.47781 * 300.00305 * 19 18 16 37 37 H 1.08006 * 119.99697 * 359.97438 * 21 20 14 38 38 H 1.08001 * 119.99826 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.99854 * 179.97438 * 23 22 21 40 40 H 1.08010 * 119.99700 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.46895 * 90.00707 * 26 25 20 42 42 H 1.08998 * 109.47459 * 210.00579 * 26 25 20 43 43 H 1.09000 * 109.47552 * 330.00627 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6377 1.9701 0.8648 5 6 3.5455 1.4430 0.0669 6 1 4.1229 1.8160 -0.7661 7 6 4.1858 0.9675 1.1915 8 7 5.4996 0.9684 1.2501 9 14 3.1871 0.3232 2.6326 10 1 2.9472 -1.1319 2.4575 11 1 3.9345 0.5531 3.8951 12 1 1.8857 1.0360 2.6911 13 7 1.6042 2.1160 -1.2307 14 6 1.1378 3.4799 -0.9475 15 1 1.1499 3.6520 0.1287 16 6 2.0469 4.4725 -1.6252 17 8 2.6990 4.1369 -2.5855 18 8 2.1323 5.7294 -1.1620 19 6 3.0284 6.6311 -1.8638 20 6 -0.2665 3.6485 -1.4674 21 6 -0.7540 2.7881 -2.4335 22 6 -2.0419 2.9431 -2.9108 23 6 -2.8429 3.9583 -2.4217 24 6 -2.3558 4.8179 -1.4551 25 6 -1.0692 4.6601 -0.9745 26 6 -0.5401 5.5939 0.0833 27 1 -0.3633 -1.0237 0.0900 28 1 -0.3634 0.5898 0.8416 29 1 -0.3634 0.4340 -0.9315 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.9501 0.6335 2.0411 33 1 2.3410 2.1215 -1.9200 34 1 2.7113 6.7228 -2.9027 35 1 3.0025 7.6117 -1.3886 36 1 4.0435 6.2360 -1.8272 37 1 -0.1282 1.9952 -2.8159 38 1 -2.4225 2.2711 -3.6658 39 1 -3.8490 4.0797 -2.7949 40 1 -2.9814 5.6113 -1.0733 41 1 -0.0653 6.4514 -0.3936 42 1 -1.3633 5.9365 0.7102 43 1 0.1910 5.0693 0.6984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573980318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:14 Heat of formation + Delta-G solvation = -60.265540 kcal Electronic energy + Delta-G solvation = -24534.332089 eV Core-core repulsion = 21158.562818 eV Total energy + Delta-G solvation = -3375.769271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51968 -39.03139 -36.83586 -35.82768 -33.45850 -32.43371 -31.84289 -30.22862 -28.17920 -27.23755 -26.53733 -25.12569 -22.60024 -21.98665 -21.26624 -19.96944 -19.85681 -17.67120 -17.01391 -16.66516 -16.24101 -15.74248 -15.34293 -14.92538 -14.62816 -13.86222 -13.77280 -13.50716 -13.48852 -12.98772 -12.86843 -12.77508 -12.56512 -12.19672 -12.14416 -11.91611 -11.79527 -11.62933 -11.52919 -11.18005 -10.90651 -10.70809 -10.69910 -10.53668 -10.31001 -10.29966 -9.79608 -9.59095 -9.24146 -8.65587 -8.52914 -8.38342 -7.74125 -6.16777 -4.19382 1.47756 1.63295 2.57253 3.01612 3.22811 3.32561 3.33575 3.99188 4.32303 4.72484 5.00119 5.06281 5.09463 5.15478 5.25369 5.28166 5.31404 5.35648 5.40895 5.63019 5.68716 5.74769 5.88905 5.93995 6.04946 6.07040 6.08633 6.23566 6.26347 6.39550 6.57146 6.64020 6.66553 6.71560 6.74787 6.89323 6.97228 7.03459 7.22329 7.26874 7.45584 7.74000 8.07456 8.19134 8.42679 8.86771 9.44489 10.95855 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.006555 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.007162 B = 4270.365542 C = 5277.340044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.180 3.820 4 H 0.032 0.968 5 C -0.547 4.547 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.881 3.119 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.263 1.263 13 N -0.656 5.656 14 C 0.140 3.860 15 H 0.107 0.893 16 C 0.458 3.542 17 O -0.500 6.500 18 O -0.356 6.356 19 C 0.034 3.966 20 C -0.075 4.075 21 C -0.070 4.070 22 C -0.138 4.138 23 C -0.118 4.118 24 C -0.131 4.131 25 C -0.074 4.074 26 C -0.119 4.119 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.265 0.735 33 H 0.358 0.642 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.139 0.861 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.969 9.051 -4.252 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C 0.071 3.929 4 H 0.050 0.950 5 C -0.586 4.586 6 H 0.094 0.906 7 C -0.127 4.127 8 N -0.531 5.531 9 Si 0.711 3.289 10 H -0.201 1.201 11 H -0.221 1.221 12 H -0.187 1.187 13 N -0.291 5.291 14 C 0.028 3.972 15 H 0.125 0.875 16 C 0.299 3.701 17 O -0.385 6.385 18 O -0.272 6.272 19 C -0.060 4.060 20 C -0.076 4.076 21 C -0.088 4.088 22 C -0.156 4.156 23 C -0.136 4.136 24 C -0.149 4.149 25 C -0.075 4.075 26 C -0.175 4.175 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.182 0.818 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.178 8.659 -4.437 17.196 hybrid contribution 0.707 0.039 0.888 1.136 sum -13.471 8.699 -3.549 16.423 Atomic orbital electron populations 1.21756 0.97559 0.99209 1.01598 1.21760 0.93691 0.98793 1.00695 1.19895 0.94724 0.91219 0.87067 0.94977 1.21663 0.89698 1.43455 1.03769 0.90605 1.24965 0.94723 0.94766 0.98232 1.69909 1.07700 1.46124 1.29360 0.86900 0.80486 0.79806 0.81757 1.20112 1.22146 1.18743 1.60930 1.44217 1.09980 1.14008 1.20196 0.89673 0.87464 0.99869 0.87504 1.24506 0.80984 0.82050 0.82520 1.90623 1.43072 1.78206 1.26645 1.86548 1.61240 1.22349 1.57075 1.23211 0.93539 0.92229 0.97069 1.19449 0.93944 0.96195 0.97983 1.21162 0.95050 0.98082 0.94504 1.21144 0.94665 0.98821 1.00960 1.21081 0.99388 0.95731 0.97436 1.20873 0.95248 1.00132 0.98652 1.19808 0.93985 0.96048 0.97641 1.20890 1.01118 0.98735 0.96784 0.94830 0.94291 0.91926 0.92097 0.93547 0.92531 0.81826 0.92342 0.88495 0.91798 0.84324 0.86388 0.86645 0.86444 0.90450 0.91922 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.71 37.16 0.36 -2.22 16 2 C -0.11 -2.36 5.21 -26.73 -0.14 -2.50 16 3 C 0.18 4.07 1.70 -68.86 -0.12 3.95 16 4 H 0.03 0.75 5.65 -51.93 -0.29 0.46 16 5 C -0.55 -14.92 9.12 -34.44 -0.31 -15.23 16 6 H 0.08 2.30 7.70 -52.49 -0.40 1.90 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 8 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 9 Si 0.88 21.35 24.69 -169.99 -4.20 17.15 16 10 H -0.27 -6.53 6.87 56.52 0.39 -6.14 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.05 6.38 56.52 0.36 -5.69 16 13 N -0.66 -13.12 4.31 -103.40 -0.45 -13.57 16 14 C 0.14 2.54 2.37 -70.02 -0.17 2.37 16 15 H 0.11 1.97 5.18 -51.93 -0.27 1.70 16 16 C 0.46 8.55 7.06 36.00 0.25 8.80 16 17 O -0.50 -10.48 15.32 -18.75 -0.29 -10.77 16 18 O -0.36 -5.71 8.71 -39.25 -0.34 -6.05 16 19 C 0.03 0.43 10.56 101.05 1.07 1.50 16 20 C -0.07 -1.19 5.07 -104.62 -0.53 -1.72 16 21 C -0.07 -1.07 8.98 -39.58 -0.36 -1.42 16 22 C -0.14 -1.79 10.05 -39.58 -0.40 -2.18 16 23 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 24 C -0.13 -1.61 9.70 -39.58 -0.38 -2.00 16 25 C -0.07 -1.04 5.87 -104.63 -0.61 -1.66 16 26 C -0.12 -1.46 8.62 36.00 0.31 -1.15 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.07 7.48 -51.93 -0.39 0.69 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 1.04 4.02 -51.93 -0.21 0.83 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 33 H 0.36 7.82 6.30 -39.29 -0.25 7.57 16 34 H 0.06 0.71 8.13 -51.92 -0.42 0.29 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 37 H 0.14 2.20 7.14 -52.48 -0.37 1.83 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 41 H 0.08 0.92 7.26 -51.93 -0.38 0.54 16 42 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.07 0.95 6.12 -51.93 -0.32 0.63 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -30.61 343.12 -7.14 -37.76 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.29 Total: 9.66 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -1.52 Total: -13.20 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.33 Total: -39.72 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.63 Total: -16.82 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.20 Total: 17.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.61 -7.14 -37.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573980318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.510 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds