Wall clock time and date at job start Tue Mar 31 2020 06:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 H 1.08999 * 109.47025 * 57.30391 * 3 2 1 5 5 C 1.50700 * 109.47079 * 177.30258 * 3 2 1 6 6 H 1.08000 * 120.00283 * 114.38771 * 5 3 2 7 7 C 1.37877 * 120.00228 * 294.38184 * 5 3 2 8 8 N 1.31510 * 120.00373 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99691 * 359.97438 * 7 5 3 10 10 H 1.48510 * 109.47056 * 90.00405 * 9 7 5 11 11 H 1.48502 * 109.47355 * 209.99822 * 9 7 5 12 12 H 1.48496 * 109.47412 * 330.00171 * 9 7 5 13 13 N 1.46903 * 109.47214 * 297.30429 * 3 2 1 14 14 C 1.46896 * 110.99772 * 137.60899 * 13 3 2 15 15 H 1.08995 * 109.47916 * 355.59537 * 14 13 3 16 16 C 1.50697 * 109.47195 * 115.59912 * 14 13 3 17 17 O 1.20832 * 120.00052 * 23.44568 * 16 14 13 18 18 O 1.34228 * 120.00161 * 203.44696 * 16 14 13 19 19 C 1.45203 * 117.00037 * 179.97438 * 18 16 14 20 20 C 1.50699 * 109.46917 * 235.59547 * 14 13 3 21 21 C 1.38255 * 120.00119 * 340.00166 * 20 14 13 22 22 C 1.38213 * 120.00286 * 180.02562 * 21 20 14 23 23 C 1.38260 * 120.00016 * 359.97438 * 22 21 20 24 24 C 1.38213 * 119.99536 * 359.97438 * 23 22 21 25 25 C 1.38217 * 120.00181 * 159.73387 * 20 14 13 26 26 C 1.50693 * 119.99760 * 359.97438 * 25 20 14 27 27 H 1.08995 * 109.47275 * 185.02623 * 1 2 3 28 28 H 1.09004 * 109.47141 * 305.02240 * 1 2 3 29 29 H 1.09002 * 109.47194 * 65.02046 * 1 2 3 30 30 H 1.08997 * 109.47324 * 240.00068 * 2 1 3 31 31 H 1.08996 * 109.47141 * 119.99808 * 2 1 3 32 32 H 0.96996 * 120.00285 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99332 * 261.56082 * 13 3 2 34 34 H 1.09008 * 109.46992 * 60.00641 * 19 18 16 35 35 H 1.09001 * 109.47173 * 179.97438 * 19 18 16 36 36 H 1.08992 * 109.47781 * 300.00305 * 19 18 16 37 37 H 1.08006 * 119.99697 * 359.97438 * 21 20 14 38 38 H 1.08001 * 119.99826 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.99854 * 179.97438 * 23 22 21 40 40 H 1.08010 * 119.99700 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.46895 * 90.00707 * 26 25 20 42 42 H 1.08998 * 109.47459 * 210.00579 * 26 25 20 43 43 H 1.09000 * 109.47552 * 330.00627 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6377 1.9701 0.8648 5 6 3.5455 1.4430 0.0669 6 1 4.1229 1.8160 -0.7661 7 6 4.1858 0.9675 1.1915 8 7 5.4996 0.9684 1.2501 9 14 3.1871 0.3232 2.6326 10 1 2.9472 -1.1319 2.4575 11 1 3.9345 0.5531 3.8951 12 1 1.8857 1.0360 2.6911 13 7 1.6042 2.1160 -1.2307 14 6 1.1378 3.4799 -0.9475 15 1 1.1499 3.6520 0.1287 16 6 2.0469 4.4725 -1.6252 17 8 2.6990 4.1369 -2.5855 18 8 2.1323 5.7294 -1.1620 19 6 3.0284 6.6311 -1.8638 20 6 -0.2665 3.6485 -1.4674 21 6 -0.7540 2.7881 -2.4335 22 6 -2.0419 2.9431 -2.9108 23 6 -2.8429 3.9583 -2.4217 24 6 -2.3558 4.8179 -1.4551 25 6 -1.0692 4.6601 -0.9745 26 6 -0.5401 5.5939 0.0833 27 1 -0.3633 -1.0237 0.0900 28 1 -0.3634 0.5898 0.8416 29 1 -0.3634 0.4340 -0.9315 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.9501 0.6335 2.0411 33 1 2.3410 2.1215 -1.9200 34 1 2.7113 6.7228 -2.9027 35 1 3.0025 7.6117 -1.3886 36 1 4.0435 6.2360 -1.8272 37 1 -0.1282 1.9952 -2.8159 38 1 -2.4225 2.2711 -3.6658 39 1 -3.8490 4.0797 -2.7949 40 1 -2.9814 5.6113 -1.0733 41 1 -0.0653 6.4514 -0.3936 42 1 -1.3633 5.9365 0.7102 43 1 0.1910 5.0693 0.6984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573980318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:14 Heat of formation + Delta-G solvation = -78.632393 kcal Electronic energy + Delta-G solvation = -24535.128535 eV Core-core repulsion = 21158.562818 eV Total energy + Delta-G solvation = -3376.565717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91212 -40.16101 -38.36124 -37.38468 -34.96879 -34.00850 -33.33454 -31.52377 -29.49322 -28.74681 -27.68134 -26.53486 -24.35245 -23.20925 -22.41835 -21.62377 -21.14801 -19.47720 -18.61101 -17.93400 -17.74301 -17.01824 -16.92563 -16.36061 -15.76219 -15.42174 -15.12595 -14.93631 -14.67547 -14.58477 -14.27172 -14.01981 -13.86411 -13.65650 -13.49760 -13.25888 -13.13616 -13.03673 -12.86375 -12.69563 -12.51163 -12.19330 -11.87216 -11.84553 -11.81216 -11.72791 -11.53650 -11.35148 -11.20151 -10.76052 -9.59885 -9.43064 -9.41321 -8.36064 -6.43405 0.41848 0.61449 1.10676 1.30292 1.33029 1.43871 1.72595 2.27480 2.93786 2.98921 3.24419 3.74340 3.92176 3.98431 4.11708 4.23960 4.26243 4.27797 4.38402 4.41940 4.48749 4.57222 4.62550 4.65929 4.78882 4.83988 4.93004 4.97786 5.04859 5.16773 5.22782 5.27020 5.30204 5.38746 5.42478 5.44815 5.64909 5.68463 5.74120 5.80141 5.95900 6.22510 6.26237 6.40258 6.63854 6.68952 7.24614 8.80402 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.006555 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.007162 B = 4270.365542 C = 5277.340044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.111 4.111 3 C 0.187 3.813 4 H 0.032 0.968 5 C -0.548 4.548 6 H 0.027 0.973 7 C 0.020 3.980 8 N -0.944 5.944 9 Si 0.944 3.056 10 H -0.263 1.263 11 H -0.294 1.294 12 H -0.240 1.240 13 N -0.645 5.645 14 C 0.141 3.859 15 H 0.101 0.899 16 C 0.456 3.544 17 O -0.533 6.533 18 O -0.353 6.353 19 C 0.026 3.974 20 C -0.096 4.096 21 C -0.089 4.089 22 C -0.140 4.140 23 C -0.111 4.111 24 C -0.129 4.129 25 C -0.083 4.083 26 C -0.117 4.117 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.344 0.656 34 H 0.064 0.936 35 H 0.140 0.860 36 H 0.047 0.953 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.855 9.920 -3.540 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C 0.078 3.922 4 H 0.050 0.950 5 C -0.587 4.587 6 H 0.046 0.954 7 C -0.179 4.179 8 N -0.584 5.584 9 Si 0.769 3.231 10 H -0.189 1.189 11 H -0.221 1.221 12 H -0.164 1.164 13 N -0.278 5.278 14 C 0.029 3.971 15 H 0.119 0.881 16 C 0.298 3.702 17 O -0.422 6.422 18 O -0.268 6.268 19 C -0.067 4.067 20 C -0.097 4.097 21 C -0.107 4.107 22 C -0.158 4.158 23 C -0.129 4.129 24 C -0.146 4.146 25 C -0.083 4.083 26 C -0.174 4.174 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.166 0.834 34 H 0.083 0.917 35 H 0.158 0.842 36 H 0.066 0.934 37 H 0.140 0.860 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.100 9.553 -3.727 20.802 hybrid contribution 1.948 -0.093 0.546 2.025 sum -16.151 9.460 -3.182 18.986 Atomic orbital electron populations 1.21647 0.94471 1.00861 1.02074 1.21679 0.96392 0.96965 0.99864 1.19770 0.91459 0.92825 0.88174 0.94983 1.21921 0.92201 1.42388 1.02158 0.95445 1.25850 0.95651 0.95087 1.01331 1.70065 1.09795 1.47997 1.30522 0.85883 0.79664 0.79872 0.77650 1.18857 1.22140 1.16386 1.60960 1.42915 1.11678 1.12297 1.20248 0.91120 0.86148 0.99574 0.88100 1.24718 0.80376 0.83011 0.82046 1.90602 1.44417 1.78944 1.28240 1.86532 1.61602 1.21567 1.57057 1.23550 0.92076 0.93098 0.97990 1.19330 0.92717 0.98126 0.99522 1.21141 0.96249 0.98122 0.95184 1.21399 0.93685 0.99557 1.01128 1.21496 1.00557 0.94439 0.96407 1.21245 0.94576 1.00657 0.98167 1.20026 0.94646 0.95664 0.97978 1.20901 1.01631 0.98284 0.96542 0.92507 0.93909 0.91414 0.92902 0.94455 0.92421 0.83412 0.91716 0.84226 0.93380 0.85995 0.84333 0.83307 0.83450 0.90166 0.89427 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 9.71 71.98 0.70 -3.78 16 2 C -0.11 -4.63 5.21 30.59 0.16 -4.47 16 3 C 0.19 8.61 1.70 44.17 0.08 8.69 16 4 H 0.03 1.49 5.65 -2.39 -0.01 1.48 16 5 C -0.55 -31.26 9.12 25.60 0.23 -31.03 16 6 H 0.03 1.79 7.70 -2.91 -0.02 1.76 16 7 C 0.02 1.13 5.45 84.66 0.46 1.59 16 8 N -0.94 -59.20 13.96 21.45 0.30 -58.91 16 9 Si 0.94 44.11 24.69 68.60 1.69 45.81 16 10 H -0.26 -11.76 6.87 99.48 0.68 -11.07 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.24 -10.28 6.38 99.48 0.63 -9.65 16 13 N -0.65 -26.73 4.31 -481.05 -2.07 -28.81 16 14 C 0.14 5.22 2.37 43.42 0.10 5.32 16 15 H 0.10 3.80 5.18 -2.39 -0.01 3.78 16 16 C 0.46 17.61 7.06 71.23 0.50 18.11 16 17 O -0.53 -23.61 15.32 21.95 0.34 -23.28 16 18 O -0.35 -11.35 8.71 -51.40 -0.45 -11.80 16 19 C 0.03 0.66 10.56 113.37 1.20 1.86 16 20 C -0.10 -3.00 5.07 -19.87 -0.10 -3.10 16 21 C -0.09 -2.64 8.98 22.27 0.20 -2.44 16 22 C -0.14 -3.26 10.05 22.27 0.22 -3.03 16 23 C -0.11 -2.19 10.05 22.27 0.22 -1.97 16 24 C -0.13 -2.66 9.70 22.27 0.22 -2.45 16 25 C -0.08 -2.14 5.87 -19.87 -0.12 -2.25 16 26 C -0.12 -2.64 8.62 71.23 0.61 -2.03 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.07 2.21 7.48 -2.39 -0.02 2.19 16 30 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.04 1.62 4.02 -2.39 -0.01 1.61 16 32 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 33 H 0.34 16.05 6.30 -89.69 -0.56 15.49 16 34 H 0.06 1.56 8.13 -2.38 -0.02 1.54 16 35 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 37 H 0.12 3.95 7.14 -2.91 -0.02 3.93 16 38 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 41 H 0.08 1.74 7.26 -2.39 -0.02 1.72 16 42 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 43 H 0.05 1.41 6.12 -2.39 -0.01 1.39 16 Total: -1.00 -69.77 343.12 4.85 -64.92 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.36 Total: 33.04 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 4.69 Total: -20.98 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -1.77 Total: -87.71 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.11 Total: -35.08 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.69 Total: 45.81 kcal Total: -69.77 4.85 -64.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573980318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.713 kcal (2) G-P(sol) polarization free energy of solvation -69.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds