Wall clock time and date at job start Tue Mar 31 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47494 * 2 1 4 4 H 1.08998 * 109.47376 * 58.04349 * 3 2 1 5 5 C 1.50698 * 109.47481 * 178.04476 * 3 2 1 6 6 H 1.08000 * 120.00450 * 119.99459 * 5 3 2 7 7 C 1.37874 * 119.99879 * 300.00334 * 5 3 2 8 8 N 1.31510 * 120.00522 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47257 * 59.99780 * 9 7 5 11 11 H 1.48504 * 109.47037 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47125 * 299.99594 * 9 7 5 13 13 N 1.46901 * 109.47084 * 298.04273 * 3 2 1 14 14 C 1.46904 * 110.99939 * 153.65298 * 13 3 2 15 15 H 1.08998 * 109.47065 * 38.32772 * 14 13 3 16 16 C 1.50694 * 109.47082 * 278.32313 * 14 13 3 17 17 O 1.20824 * 120.00449 * 332.57033 * 16 14 13 18 18 O 1.34231 * 119.99530 * 152.56962 * 16 14 13 19 19 C 1.45202 * 117.00019 * 179.97438 * 18 16 14 20 20 C 1.50699 * 109.46817 * 158.32615 * 14 13 3 21 21 C 1.38258 * 120.00141 * 24.72685 * 20 14 13 22 22 C 1.38221 * 119.99758 * 179.81189 * 21 20 14 23 23 C 1.38251 * 120.00095 * 0.41987 * 22 21 20 24 24 C 1.38211 * 119.99956 * 359.81058 * 23 22 21 25 25 C 1.38212 * 119.99603 * 205.00297 * 20 14 13 26 26 C 1.50691 * 120.00351 * 359.97438 * 25 20 14 27 27 H 1.09007 * 109.46817 * 297.95708 * 1 2 3 28 28 H 1.08994 * 109.47124 * 57.94974 * 1 2 3 29 29 H 1.08994 * 109.47312 * 177.95231 * 1 2 3 30 30 H 1.09003 * 109.47241 * 239.99468 * 2 1 3 31 31 H 1.09000 * 109.47539 * 119.99860 * 2 1 3 32 32 H 0.96993 * 120.00615 * 180.02562 * 8 7 5 33 33 H 1.00896 * 111.00407 * 277.61153 * 13 3 2 34 34 H 1.09003 * 109.47443 * 300.00534 * 19 18 16 35 35 H 1.09005 * 109.46811 * 59.99925 * 19 18 16 36 36 H 1.09001 * 109.47605 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.00177 * 359.97438 * 21 20 14 38 38 H 1.08005 * 119.99375 * 180.20867 * 22 21 20 39 39 H 1.08000 * 120.00024 * 179.79438 * 23 22 21 40 40 H 1.08002 * 120.00021 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47541 * 89.99681 * 26 25 20 42 42 H 1.09003 * 109.47551 * 210.00151 * 26 25 20 43 43 H 1.09008 * 109.47147 * 330.00035 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6484 1.9664 0.8719 5 6 3.5462 1.4427 0.0485 6 1 4.1122 1.9011 -0.7490 7 6 4.2019 0.8576 1.1109 8 7 3.5129 0.2996 2.0822 9 14 6.0690 0.8573 1.1706 10 1 6.5645 2.2572 1.1702 11 1 6.5246 0.1717 2.4066 12 1 6.6021 0.1432 -0.0172 13 7 1.5894 2.1212 -1.2224 14 6 1.4893 3.5717 -1.0127 15 1 2.3143 3.9057 -0.3835 16 6 0.1808 3.8926 -0.3378 17 8 -0.7725 3.1663 -0.4916 18 8 0.0742 4.9854 0.4344 19 6 -1.2161 5.2325 1.0526 20 6 1.5547 4.2772 -2.3428 21 6 1.1815 3.6131 -3.4966 22 6 1.2378 4.2614 -4.7161 23 6 1.6755 5.5711 -4.7831 24 6 2.0531 6.2334 -3.6303 25 6 1.9932 5.5862 -2.4099 26 6 2.4053 6.3082 -1.1531 27 1 -0.3633 0.4818 0.9078 28 1 -0.3633 0.5453 -0.8710 29 1 -0.3633 -1.0269 -0.0367 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9741 -0.1117 2.8298 33 1 2.1977 1.9092 -1.9990 34 1 -1.9745 5.3462 0.2779 35 1 -1.4774 4.3924 1.6962 36 1 -1.1655 6.1444 1.6475 37 1 0.8435 2.5886 -3.4448 38 1 0.9430 3.7436 -5.6169 39 1 1.7226 6.0765 -5.7364 40 1 2.3954 7.2564 -3.6827 41 1 3.4696 6.1525 -0.9770 42 1 2.2076 7.3743 -1.2650 43 1 1.8367 5.9200 -0.3080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573980319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:17 Heat of formation + Delta-G solvation = -65.285012 kcal Electronic energy + Delta-G solvation = -24455.836371 eV Core-core repulsion = 21079.849440 eV Total energy + Delta-G solvation = -3375.986931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33485 -39.01372 -36.54417 -35.56465 -33.44830 -32.49148 -31.49657 -29.85961 -28.06622 -27.02889 -26.28713 -25.04312 -22.73786 -22.04243 -21.20902 -19.78053 -19.42159 -17.38843 -16.75855 -16.24702 -16.17567 -15.61585 -15.29579 -14.70334 -14.64423 -13.83837 -13.67580 -13.54665 -13.22397 -12.89874 -12.79650 -12.72166 -12.37879 -12.10207 -11.95748 -11.76075 -11.59454 -11.30623 -11.17379 -11.01168 -10.78118 -10.74458 -10.63283 -10.38764 -10.27825 -9.90109 -9.58824 -9.53846 -9.10751 -8.59368 -8.42590 -8.39394 -7.46279 -6.04523 -4.18346 1.44510 1.58025 2.79976 3.11737 3.26043 3.31600 3.33755 3.94965 4.35693 4.87047 4.98177 5.11360 5.20153 5.23294 5.29875 5.32348 5.36799 5.41028 5.50388 5.71967 5.74907 5.87806 5.90241 5.99533 6.11144 6.23770 6.43482 6.46655 6.61846 6.63496 6.68500 6.78859 6.79771 6.86015 7.07000 7.18139 7.31175 7.39779 7.55146 7.74879 7.94336 8.04403 8.19485 8.38358 8.49942 8.91923 9.49813 10.96330 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.006187 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.122211 B = 4524.374636 C = 5174.091663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 C 0.217 3.783 4 H 0.029 0.971 5 C -0.552 4.552 6 H 0.056 0.944 7 C 0.071 3.929 8 N -0.882 5.882 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.666 5.666 14 C 0.146 3.854 15 H 0.089 0.911 16 C 0.472 3.528 17 O -0.481 6.481 18 O -0.365 6.365 19 C 0.037 3.963 20 C -0.087 4.087 21 C -0.087 4.087 22 C -0.133 4.133 23 C -0.117 4.117 24 C -0.129 4.129 25 C -0.067 4.067 26 C -0.129 4.129 27 H 0.032 0.968 28 H 0.058 0.942 29 H 0.021 0.979 30 H 0.032 0.968 31 H 0.089 0.911 32 H 0.263 0.737 33 H 0.345 0.655 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 11.286 -7.580 14.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.141 4.141 3 C 0.110 3.890 4 H 0.047 0.953 5 C -0.591 4.591 6 H 0.074 0.926 7 C -0.132 4.132 8 N -0.520 5.520 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.300 5.300 14 C 0.034 3.966 15 H 0.107 0.893 16 C 0.312 3.688 17 O -0.365 6.365 18 O -0.282 6.282 19 C -0.057 4.057 20 C -0.087 4.087 21 C -0.105 4.105 22 C -0.151 4.151 23 C -0.135 4.135 24 C -0.147 4.147 25 C -0.068 4.068 26 C -0.185 4.185 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.165 0.835 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.156 0.844 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.720 10.836 -7.286 14.256 hybrid contribution 1.813 0.151 0.214 1.832 sum -3.907 10.987 -7.072 13.638 Atomic orbital electron populations 1.21691 0.98493 0.98083 1.01097 1.21462 0.92404 0.98537 1.01734 1.19220 0.92465 0.91460 0.85885 0.95317 1.21787 0.92187 1.38158 1.06971 0.92612 1.24913 0.98176 0.94765 0.95391 1.69872 1.35277 1.36943 1.09875 0.86699 0.85860 0.78249 0.77451 1.20288 1.21203 1.20206 1.60600 1.56614 1.02494 1.10260 1.19712 0.91881 0.92392 0.92637 0.89318 1.23796 0.91154 0.77764 0.76112 1.90591 1.39490 1.47811 1.58592 1.86495 1.36753 1.45049 1.59905 1.23144 0.83263 1.01903 0.97432 1.19523 1.01236 0.93905 0.94049 1.21211 0.97108 1.00833 0.91398 1.21115 1.01255 0.95049 0.97674 1.21104 0.99365 0.95058 0.97996 1.20937 1.01910 0.99839 0.92008 1.19841 0.97713 0.93547 0.95661 1.21012 1.02257 0.99560 0.95687 0.94903 0.92312 0.95976 0.94913 0.89246 0.92700 0.83463 0.92471 0.92076 0.88689 0.84376 0.86188 0.86462 0.86270 0.90834 0.91804 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.80 37.16 0.36 -2.65 16 2 C -0.10 -2.50 5.43 -26.73 -0.15 -2.64 16 3 C 0.22 5.32 1.81 -68.86 -0.12 5.19 16 4 H 0.03 0.80 7.49 -51.93 -0.39 0.41 16 5 C -0.55 -14.45 8.32 -34.44 -0.29 -14.74 16 6 H 0.06 1.43 7.72 -52.49 -0.41 1.03 16 7 C 0.07 1.90 5.30 -17.82 -0.09 1.81 16 8 N -0.88 -24.61 11.31 55.43 0.63 -23.98 16 9 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.67 -13.88 4.16 -103.40 -0.43 -14.31 16 14 C 0.15 2.79 1.90 -70.02 -0.13 2.65 16 15 H 0.09 1.81 6.57 -51.93 -0.34 1.47 16 16 C 0.47 9.20 6.54 36.00 0.24 9.43 16 17 O -0.48 -10.35 16.23 -18.75 -0.30 -10.66 16 18 O -0.36 -6.18 8.44 -39.26 -0.33 -6.51 16 19 C 0.04 0.49 10.56 101.05 1.07 1.55 16 20 C -0.09 -1.44 4.91 -104.62 -0.51 -1.95 16 21 C -0.09 -1.36 8.89 -39.58 -0.35 -1.71 16 22 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 23 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 24 C -0.13 -1.64 9.70 -39.58 -0.38 -2.03 16 25 C -0.07 -0.99 5.88 -104.63 -0.62 -1.60 16 26 C -0.13 -1.72 9.22 36.00 0.33 -1.39 16 27 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.06 1.30 7.43 -51.93 -0.39 0.91 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 2.41 6.02 -51.93 -0.31 2.09 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 33 H 0.34 6.95 7.11 -39.29 -0.28 6.67 16 34 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.14 2.20 7.02 -52.49 -0.37 1.83 16 38 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 43 H 0.09 1.26 4.50 -51.92 -0.23 1.03 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -29.43 350.76 -8.12 -37.55 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.50 Total: 8.95 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -1.45 Total: -12.04 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.20 Total: -38.30 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.64 Total: -17.17 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.43 -8.12 -37.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573980319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.734 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds