Wall clock time and date at job start Tue Mar 31 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47494 * 2 1 4 4 H 1.08998 * 109.47376 * 58.04349 * 3 2 1 5 5 C 1.50698 * 109.47481 * 178.04476 * 3 2 1 6 6 H 1.08000 * 120.00450 * 119.99459 * 5 3 2 7 7 C 1.37874 * 119.99879 * 300.00334 * 5 3 2 8 8 N 1.31510 * 120.00522 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47257 * 59.99780 * 9 7 5 11 11 H 1.48504 * 109.47037 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47125 * 299.99594 * 9 7 5 13 13 N 1.46901 * 109.47084 * 298.04273 * 3 2 1 14 14 C 1.46904 * 110.99939 * 153.65298 * 13 3 2 15 15 H 1.08998 * 109.47065 * 38.32772 * 14 13 3 16 16 C 1.50694 * 109.47082 * 278.32313 * 14 13 3 17 17 O 1.20824 * 120.00449 * 332.57033 * 16 14 13 18 18 O 1.34231 * 119.99530 * 152.56962 * 16 14 13 19 19 C 1.45202 * 117.00019 * 179.97438 * 18 16 14 20 20 C 1.50699 * 109.46817 * 158.32615 * 14 13 3 21 21 C 1.38258 * 120.00141 * 24.72685 * 20 14 13 22 22 C 1.38221 * 119.99758 * 179.81189 * 21 20 14 23 23 C 1.38251 * 120.00095 * 0.41987 * 22 21 20 24 24 C 1.38211 * 119.99956 * 359.81058 * 23 22 21 25 25 C 1.38212 * 119.99603 * 205.00297 * 20 14 13 26 26 C 1.50691 * 120.00351 * 359.97438 * 25 20 14 27 27 H 1.09007 * 109.46817 * 297.95708 * 1 2 3 28 28 H 1.08994 * 109.47124 * 57.94974 * 1 2 3 29 29 H 1.08994 * 109.47312 * 177.95231 * 1 2 3 30 30 H 1.09003 * 109.47241 * 239.99468 * 2 1 3 31 31 H 1.09000 * 109.47539 * 119.99860 * 2 1 3 32 32 H 0.96993 * 120.00615 * 180.02562 * 8 7 5 33 33 H 1.00896 * 111.00407 * 277.61153 * 13 3 2 34 34 H 1.09003 * 109.47443 * 300.00534 * 19 18 16 35 35 H 1.09005 * 109.46811 * 59.99925 * 19 18 16 36 36 H 1.09001 * 109.47605 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.00177 * 359.97438 * 21 20 14 38 38 H 1.08005 * 119.99375 * 180.20867 * 22 21 20 39 39 H 1.08000 * 120.00024 * 179.79438 * 23 22 21 40 40 H 1.08002 * 120.00021 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47541 * 89.99681 * 26 25 20 42 42 H 1.09003 * 109.47551 * 210.00151 * 26 25 20 43 43 H 1.09008 * 109.47147 * 330.00035 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6484 1.9664 0.8719 5 6 3.5462 1.4427 0.0485 6 1 4.1122 1.9011 -0.7490 7 6 4.2019 0.8576 1.1109 8 7 3.5129 0.2996 2.0822 9 14 6.0690 0.8573 1.1706 10 1 6.5645 2.2572 1.1702 11 1 6.5246 0.1717 2.4066 12 1 6.6021 0.1432 -0.0172 13 7 1.5894 2.1212 -1.2224 14 6 1.4893 3.5717 -1.0127 15 1 2.3143 3.9057 -0.3835 16 6 0.1808 3.8926 -0.3378 17 8 -0.7725 3.1663 -0.4916 18 8 0.0742 4.9854 0.4344 19 6 -1.2161 5.2325 1.0526 20 6 1.5547 4.2772 -2.3428 21 6 1.1815 3.6131 -3.4966 22 6 1.2378 4.2614 -4.7161 23 6 1.6755 5.5711 -4.7831 24 6 2.0531 6.2334 -3.6303 25 6 1.9932 5.5862 -2.4099 26 6 2.4053 6.3082 -1.1531 27 1 -0.3633 0.4818 0.9078 28 1 -0.3633 0.5453 -0.8710 29 1 -0.3633 -1.0269 -0.0367 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9741 -0.1117 2.8298 33 1 2.1977 1.9092 -1.9990 34 1 -1.9745 5.3462 0.2779 35 1 -1.4774 4.3924 1.6962 36 1 -1.1655 6.1444 1.6475 37 1 0.8435 2.5886 -3.4448 38 1 0.9430 3.7436 -5.6169 39 1 1.7226 6.0765 -5.7364 40 1 2.3954 7.2564 -3.6827 41 1 3.4696 6.1525 -0.9770 42 1 2.2076 7.3743 -1.2650 43 1 1.8367 5.9200 -0.3080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573980319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:17 Heat of formation + Delta-G solvation = -80.825633 kcal Electronic energy + Delta-G solvation = -24456.510263 eV Core-core repulsion = 21079.849440 eV Total energy + Delta-G solvation = -3376.660823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74326 -40.20690 -38.16360 -37.17284 -35.02720 -33.80705 -33.25612 -31.30790 -29.39229 -28.47297 -27.63920 -26.55461 -24.63606 -23.24304 -22.46039 -21.27455 -21.13017 -19.00092 -18.43533 -17.71261 -17.62953 -16.86953 -16.78449 -16.35514 -15.86147 -15.34445 -15.20520 -14.90285 -14.66667 -14.32465 -14.17224 -14.04783 -13.88206 -13.41426 -13.19266 -13.14050 -13.10045 -13.00677 -12.82518 -12.67555 -12.58862 -12.15608 -11.98188 -11.86384 -11.73624 -11.56238 -11.44811 -11.38296 -11.06030 -10.49595 -9.69457 -9.49639 -9.23884 -8.08682 -6.31097 0.34594 0.52208 1.28134 1.40570 1.41280 1.48856 1.78667 2.39657 2.87106 3.12957 3.46889 3.73772 3.97000 4.05019 4.12659 4.26023 4.30596 4.31571 4.43604 4.51993 4.54903 4.65583 4.70831 4.73900 4.84739 4.89053 4.91595 5.01666 5.05897 5.16634 5.33857 5.39157 5.40254 5.47674 5.54032 5.60794 5.64604 5.72083 5.76693 6.02996 6.06703 6.14893 6.24275 6.63223 6.85974 6.93076 7.40802 8.89827 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.006187 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.122211 B = 4524.374636 C = 5174.091663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.098 4.098 3 C 0.228 3.772 4 H -0.010 1.010 5 C -0.563 4.563 6 H 0.057 0.943 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.660 5.660 14 C 0.150 3.850 15 H 0.069 0.931 16 C 0.471 3.529 17 O -0.510 6.510 18 O -0.365 6.365 19 C 0.029 3.971 20 C -0.111 4.111 21 C -0.105 4.105 22 C -0.133 4.133 23 C -0.109 4.109 24 C -0.126 4.126 25 C -0.079 4.079 26 C -0.127 4.127 27 H 0.017 0.983 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.263 0.737 33 H 0.348 0.652 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.160 13.182 -9.466 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.137 4.137 3 C 0.120 3.880 4 H 0.008 0.992 5 C -0.601 4.601 6 H 0.075 0.925 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.293 5.293 14 C 0.038 3.962 15 H 0.087 0.913 16 C 0.313 3.687 17 O -0.396 6.396 18 O -0.282 6.282 19 C -0.064 4.064 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.151 4.151 23 C -0.127 4.127 24 C -0.144 4.144 25 C -0.080 4.080 26 C -0.184 4.184 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.169 0.831 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.162 0.838 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.139 12.756 -9.178 16.533 hybrid contribution 1.574 -0.345 0.781 1.791 sum -3.564 12.411 -8.397 15.402 Atomic orbital electron populations 1.21514 0.96786 0.99262 1.00192 1.21336 0.93834 0.98145 1.00395 1.18917 0.91679 0.91429 0.85953 0.99196 1.22063 0.93158 1.37894 1.07031 0.92519 1.25671 1.02508 0.94465 0.95071 1.70010 1.36901 1.37649 1.10375 0.85701 0.80615 0.78397 0.77488 1.19677 1.21004 1.19584 1.60461 1.56150 1.03978 1.08695 1.19622 0.91110 0.91182 0.94257 0.91295 1.23898 0.90946 0.77968 0.75933 1.90562 1.40380 1.48891 1.59793 1.86488 1.38685 1.43754 1.59275 1.23502 0.81916 1.03288 0.97728 1.19434 1.03901 0.95053 0.92761 1.21215 0.98238 1.00585 0.92337 1.21412 1.00540 0.95741 0.97380 1.21549 0.97279 0.94478 0.99367 1.21311 1.00830 1.01104 0.91168 1.20049 0.97847 0.92934 0.97157 1.21005 1.01776 1.00966 0.94609 0.96419 0.92394 0.93729 0.94705 0.91892 0.92763 0.83122 0.91768 0.93131 0.84646 0.85766 0.83780 0.82853 0.83248 0.90981 0.89133 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 9.80 71.98 0.71 -4.72 16 2 C -0.10 -4.94 5.43 30.59 0.17 -4.77 16 3 C 0.23 11.68 1.81 44.17 0.08 11.76 16 4 H -0.01 -0.58 7.49 -2.39 -0.02 -0.60 16 5 C -0.56 -30.23 8.32 25.60 0.21 -30.01 16 6 H 0.06 2.97 7.72 -2.91 -0.02 2.94 16 7 C 0.02 1.28 5.30 84.65 0.45 1.73 16 8 N -0.91 -52.23 11.31 21.45 0.24 -51.98 16 9 Si 0.95 42.85 29.54 68.60 2.03 44.87 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 13 N -0.66 -28.61 4.16 -481.04 -2.00 -30.62 16 14 C 0.15 5.97 1.90 43.42 0.08 6.05 16 15 H 0.07 2.98 6.57 -2.39 -0.02 2.96 16 16 C 0.47 19.04 6.54 71.23 0.47 19.50 16 17 O -0.51 -22.73 16.23 21.97 0.36 -22.37 16 18 O -0.37 -12.59 8.44 -51.43 -0.43 -13.03 16 19 C 0.03 0.75 10.56 113.37 1.20 1.95 16 20 C -0.11 -3.70 4.91 -19.87 -0.10 -3.80 16 21 C -0.11 -3.25 8.89 22.27 0.20 -3.05 16 22 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 23 C -0.11 -2.23 10.05 22.27 0.22 -2.00 16 24 C -0.13 -2.80 9.70 22.27 0.22 -2.59 16 25 C -0.08 -2.24 5.88 -19.87 -0.12 -2.35 16 26 C -0.13 -3.27 9.22 71.23 0.66 -2.61 16 27 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.06 2.61 7.43 -2.39 -0.02 2.59 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 3.51 6.02 -2.39 -0.01 3.50 16 32 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.35 14.53 7.11 -89.70 -0.64 13.90 16 34 H 0.06 1.58 8.13 -2.39 -0.02 1.57 16 35 H 0.05 1.42 8.13 -2.38 -0.02 1.40 16 36 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.12 4.06 7.02 -2.91 -0.02 4.04 16 38 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.09 1.77 8.09 -2.39 -0.02 1.75 16 43 H 0.07 1.98 4.50 -2.38 -0.01 1.97 16 Total: -1.00 -65.41 350.76 5.22 -60.19 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.37 Total: 30.80 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 4.66 Total: -17.87 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -1.76 Total: -82.60 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.08 Total: -35.40 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -65.41 5.22 -60.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573980319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.636 kcal (2) G-P(sol) polarization free energy of solvation -65.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds