Wall clock time and date at job start Tue Mar 31 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47204 * 2 1 4 4 H 1.09000 * 109.47036 * 305.55689 * 3 2 1 5 5 C 1.50703 * 109.47007 * 185.56250 * 3 2 1 6 6 H 1.08004 * 119.99316 * 239.99741 * 5 3 2 7 7 C 1.37873 * 120.00386 * 59.99942 * 5 3 2 8 8 N 1.31519 * 119.99867 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00114 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47116 * 89.99904 * 9 7 5 11 11 H 1.48503 * 109.47045 * 209.99860 * 9 7 5 12 12 H 1.48496 * 109.47328 * 329.99376 * 9 7 5 13 13 N 1.46897 * 109.47306 * 65.56016 * 3 2 1 14 14 C 1.46908 * 110.99995 * 204.17514 * 13 3 2 15 15 H 1.08998 * 109.46763 * 322.69713 * 14 13 3 16 16 C 1.50694 * 109.47023 * 82.69655 * 14 13 3 17 17 O 1.20826 * 120.00302 * 27.89526 * 16 14 13 18 18 O 1.34231 * 119.99807 * 207.90359 * 16 14 13 19 19 C 1.45206 * 117.00068 * 179.97438 * 18 16 14 20 20 C 1.50702 * 109.46873 * 202.69557 * 14 13 3 21 21 C 1.38257 * 120.00130 * 339.99791 * 20 14 13 22 22 C 1.38212 * 120.00061 * 180.02562 * 21 20 14 23 23 C 1.38256 * 119.99756 * 359.97438 * 22 21 20 24 24 C 1.38213 * 120.00215 * 359.95868 * 23 22 21 25 25 C 1.38214 * 119.99906 * 159.72718 * 20 14 13 26 26 C 1.50708 * 119.99733 * 359.97438 * 25 20 14 27 27 H 1.08997 * 109.47094 * 294.06319 * 1 2 3 28 28 H 1.08998 * 109.47327 * 54.06685 * 1 2 3 29 29 H 1.09006 * 109.47397 * 174.06703 * 1 2 3 30 30 H 1.09005 * 109.46965 * 239.99572 * 2 1 3 31 31 H 1.09000 * 109.46775 * 120.00148 * 2 1 3 32 32 H 0.96993 * 120.00166 * 180.02562 * 8 7 5 33 33 H 1.00898 * 110.99694 * 328.12567 * 13 3 2 34 34 H 1.09001 * 109.47041 * 179.97438 * 19 18 16 35 35 H 1.09000 * 109.46712 * 299.99709 * 19 18 16 36 36 H 1.09005 * 109.46910 * 59.99627 * 19 18 16 37 37 H 1.08003 * 119.99707 * 359.97438 * 21 20 14 38 38 H 1.07991 * 120.00312 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00047 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.00153 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.47223 * 90.00092 * 26 25 20 42 42 H 1.08992 * 109.46812 * 209.99787 * 26 25 20 43 43 H 1.08999 * 109.46867 * 329.99780 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5407 1.4446 -0.1377 6 1 4.1531 1.8867 0.6343 7 6 4.1319 0.8823 -1.2492 8 7 3.3861 0.3436 -2.1890 9 14 5.9920 0.8844 -1.4194 10 1 6.5466 -0.3496 -0.8072 11 1 6.3573 0.9305 -2.8581 12 1 6.5510 2.0741 -0.7286 13 7 1.6630 2.0951 1.2608 14 6 1.6017 3.5542 1.1006 15 1 2.3992 3.8801 0.4329 16 6 0.2676 3.9396 0.5154 17 8 -0.7016 3.2454 0.7119 18 8 0.1560 5.0542 -0.2242 19 6 -1.1592 5.3632 -0.7565 20 6 1.7705 4.2146 2.4447 21 6 1.5366 3.4958 3.6023 22 6 1.6909 4.1017 4.8350 23 6 2.0795 5.4264 4.9103 24 6 2.3146 6.1445 3.7530 25 6 2.1644 5.5373 2.5201 26 6 2.4257 6.3188 1.2583 27 1 -0.3633 0.4190 0.9383 28 1 -0.3634 0.6031 -0.8321 29 1 -0.3634 -1.0222 -0.1062 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8020 -0.0523 -2.9707 33 1 0.7878 1.7324 1.6081 34 1 -1.1099 6.2871 -1.3328 35 1 -1.4904 4.5493 -1.4014 36 1 -1.8643 5.4854 0.0657 37 1 1.2327 2.4611 3.5434 38 1 1.5079 3.5404 5.7392 39 1 2.1996 5.9000 5.8734 40 1 2.6186 7.1792 3.8119 41 1 1.5044 6.8016 0.9325 42 1 3.1846 7.0769 1.4512 43 1 2.7772 5.6430 0.4786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573980321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:23 Heat of formation + Delta-G solvation = -65.643964 kcal Electronic energy + Delta-G solvation = -24467.378046 eV Core-core repulsion = 21091.375550 eV Total energy + Delta-G solvation = -3376.002496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49898 -38.98299 -36.77639 -35.68209 -33.42148 -32.44167 -31.58142 -29.84374 -28.05944 -27.01530 -26.36296 -25.15398 -22.79057 -21.98311 -21.20414 -19.81289 -19.58834 -17.46438 -16.71988 -16.52799 -16.09737 -15.76329 -15.30540 -14.66269 -14.63517 -14.00708 -13.69397 -13.52873 -13.34142 -12.96702 -12.81477 -12.70209 -12.25355 -12.07154 -12.06511 -11.91803 -11.71317 -11.49523 -11.19575 -10.91667 -10.73282 -10.63924 -10.54998 -10.52695 -10.35178 -10.00048 -9.75933 -9.64920 -9.20124 -8.50039 -8.39601 -8.33104 -7.59902 -6.01230 -4.06587 1.53360 1.66883 2.58478 3.09459 3.31381 3.37980 3.41888 4.03476 4.41165 4.85620 5.04858 5.10732 5.16215 5.25021 5.27872 5.32310 5.33883 5.39621 5.52596 5.65625 5.75653 5.84716 5.98169 5.99703 6.13906 6.22587 6.25834 6.31632 6.45410 6.47523 6.64894 6.70444 6.75786 6.90157 6.95693 7.02116 7.09630 7.25714 7.37009 7.72001 7.83423 7.99211 8.16703 8.29405 8.57643 9.01142 9.58854 11.04307 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.006193 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.535940 B = 4519.802764 C = 5155.690052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.216 3.784 4 H 0.003 0.997 5 C -0.499 4.499 6 H 0.065 0.935 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.652 5.652 14 C 0.142 3.858 15 H 0.128 0.872 16 C 0.444 3.556 17 O -0.510 6.510 18 O -0.356 6.356 19 C 0.033 3.967 20 C -0.069 4.069 21 C -0.078 4.078 22 C -0.135 4.135 23 C -0.120 4.120 24 C -0.129 4.129 25 C -0.073 4.073 26 C -0.119 4.119 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.260 0.740 33 H 0.335 0.665 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 10.878 7.627 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.109 3.891 4 H 0.020 0.980 5 C -0.538 4.538 6 H 0.083 0.917 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.285 5.285 14 C 0.029 3.971 15 H 0.145 0.855 16 C 0.284 3.716 17 O -0.397 6.397 18 O -0.272 6.272 19 C -0.062 4.062 20 C -0.070 4.070 21 C -0.096 4.096 22 C -0.153 4.153 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.073 4.073 26 C -0.176 4.176 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.150 0.850 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.097 10.567 7.714 14.041 hybrid contribution -0.093 -0.065 -0.755 0.764 sum -5.190 10.503 6.959 13.626 Atomic orbital electron populations 1.21855 0.99138 0.99496 1.00084 1.21754 0.91537 0.99732 1.03257 1.19297 0.95779 0.90491 0.83526 0.97960 1.21189 0.90811 1.37235 1.04574 0.91695 1.24953 0.98232 0.95411 0.95722 1.69878 1.34817 1.39025 1.09565 0.86527 0.85560 0.78531 0.76985 1.20706 1.21408 1.19833 1.61166 1.35737 0.98559 1.32995 1.20347 0.91088 0.91802 0.93850 0.85490 1.25545 0.93185 0.77822 0.75003 1.90596 1.40000 1.51584 1.57490 1.86607 1.34771 1.43102 1.62680 1.23184 0.82760 1.01527 0.98690 1.19368 1.00834 0.93059 0.93749 1.21064 0.97067 1.00187 0.91254 1.21095 1.01507 0.95136 0.97531 1.21069 1.00043 0.94715 0.97937 1.20892 1.02365 0.99601 0.91853 1.19808 0.98342 0.93585 0.95591 1.20897 1.01900 0.99788 0.94995 0.94199 0.94050 0.94469 0.88062 0.93838 0.92961 0.84409 0.88566 0.92132 0.92438 0.85050 0.86338 0.86577 0.86363 0.90732 0.91855 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.63 37.16 0.36 -2.72 16 2 C -0.12 -2.96 5.37 -26.73 -0.14 -3.10 16 3 C 0.22 5.30 1.85 -68.87 -0.13 5.18 16 4 H 0.00 0.08 7.55 -51.93 -0.39 -0.32 16 5 C -0.50 -13.38 8.44 -34.44 -0.29 -13.67 16 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.47 16 8 N -0.89 -25.02 11.29 55.43 0.63 -24.39 16 9 Si 0.90 21.13 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.65 -13.80 4.90 -103.40 -0.51 -14.31 16 14 C 0.14 2.74 1.99 -70.01 -0.14 2.60 16 15 H 0.13 2.60 5.88 -51.93 -0.31 2.30 16 16 C 0.44 8.40 6.55 36.00 0.24 8.63 16 17 O -0.51 -10.43 15.67 -18.75 -0.29 -10.73 16 18 O -0.36 -5.87 8.98 -39.26 -0.35 -6.22 16 19 C 0.03 0.42 10.56 101.05 1.07 1.49 16 20 C -0.07 -1.19 5.07 -104.62 -0.53 -1.72 16 21 C -0.08 -1.26 9.32 -39.58 -0.37 -1.63 16 22 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 23 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 24 C -0.13 -1.70 9.70 -39.59 -0.38 -2.08 16 25 C -0.07 -1.10 5.87 -104.62 -0.61 -1.71 16 26 C -0.12 -1.59 8.69 36.01 0.31 -1.28 16 27 H 0.04 0.78 6.66 -51.93 -0.35 0.44 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.68 5.94 -51.93 -0.31 2.37 16 31 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.33 6.90 4.95 -39.29 -0.19 6.70 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 36 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 37 H 0.13 2.17 6.77 -52.48 -0.36 1.81 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.07 0.94 7.42 -51.93 -0.39 0.55 16 42 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 43 H 0.08 1.12 6.12 -51.93 -0.32 0.80 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -29.43 348.62 -8.18 -37.62 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.37 Total: 9.38 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.52 Total: -12.70 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.12 Total: -38.70 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.65 Total: -16.95 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.43 -8.18 -37.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573980321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.027 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds