Wall clock time and date at job start Tue Mar 31 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47204 * 2 1 4 4 H 1.09000 * 109.47036 * 305.55689 * 3 2 1 5 5 C 1.50703 * 109.47007 * 185.56250 * 3 2 1 6 6 H 1.08004 * 119.99316 * 239.99741 * 5 3 2 7 7 C 1.37873 * 120.00386 * 59.99942 * 5 3 2 8 8 N 1.31519 * 119.99867 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00114 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47116 * 89.99904 * 9 7 5 11 11 H 1.48503 * 109.47045 * 209.99860 * 9 7 5 12 12 H 1.48496 * 109.47328 * 329.99376 * 9 7 5 13 13 N 1.46897 * 109.47306 * 65.56016 * 3 2 1 14 14 C 1.46908 * 110.99995 * 204.17514 * 13 3 2 15 15 H 1.08998 * 109.46763 * 322.69713 * 14 13 3 16 16 C 1.50694 * 109.47023 * 82.69655 * 14 13 3 17 17 O 1.20826 * 120.00302 * 27.89526 * 16 14 13 18 18 O 1.34231 * 119.99807 * 207.90359 * 16 14 13 19 19 C 1.45206 * 117.00068 * 179.97438 * 18 16 14 20 20 C 1.50702 * 109.46873 * 202.69557 * 14 13 3 21 21 C 1.38257 * 120.00130 * 339.99791 * 20 14 13 22 22 C 1.38212 * 120.00061 * 180.02562 * 21 20 14 23 23 C 1.38256 * 119.99756 * 359.97438 * 22 21 20 24 24 C 1.38213 * 120.00215 * 359.95868 * 23 22 21 25 25 C 1.38214 * 119.99906 * 159.72718 * 20 14 13 26 26 C 1.50708 * 119.99733 * 359.97438 * 25 20 14 27 27 H 1.08997 * 109.47094 * 294.06319 * 1 2 3 28 28 H 1.08998 * 109.47327 * 54.06685 * 1 2 3 29 29 H 1.09006 * 109.47397 * 174.06703 * 1 2 3 30 30 H 1.09005 * 109.46965 * 239.99572 * 2 1 3 31 31 H 1.09000 * 109.46775 * 120.00148 * 2 1 3 32 32 H 0.96993 * 120.00166 * 180.02562 * 8 7 5 33 33 H 1.00898 * 110.99694 * 328.12567 * 13 3 2 34 34 H 1.09001 * 109.47041 * 179.97438 * 19 18 16 35 35 H 1.09000 * 109.46712 * 299.99709 * 19 18 16 36 36 H 1.09005 * 109.46910 * 59.99627 * 19 18 16 37 37 H 1.08003 * 119.99707 * 359.97438 * 21 20 14 38 38 H 1.07991 * 120.00312 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00047 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.00153 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.47223 * 90.00092 * 26 25 20 42 42 H 1.08992 * 109.46812 * 209.99787 * 26 25 20 43 43 H 1.08999 * 109.46867 * 329.99780 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5407 1.4446 -0.1377 6 1 4.1531 1.8867 0.6343 7 6 4.1319 0.8823 -1.2492 8 7 3.3861 0.3436 -2.1890 9 14 5.9920 0.8844 -1.4194 10 1 6.5466 -0.3496 -0.8072 11 1 6.3573 0.9305 -2.8581 12 1 6.5510 2.0741 -0.7286 13 7 1.6630 2.0951 1.2608 14 6 1.6017 3.5542 1.1006 15 1 2.3992 3.8801 0.4329 16 6 0.2676 3.9396 0.5154 17 8 -0.7016 3.2454 0.7119 18 8 0.1560 5.0542 -0.2242 19 6 -1.1592 5.3632 -0.7565 20 6 1.7705 4.2146 2.4447 21 6 1.5366 3.4958 3.6023 22 6 1.6909 4.1017 4.8350 23 6 2.0795 5.4264 4.9103 24 6 2.3146 6.1445 3.7530 25 6 2.1644 5.5373 2.5201 26 6 2.4257 6.3188 1.2583 27 1 -0.3633 0.4190 0.9383 28 1 -0.3634 0.6031 -0.8321 29 1 -0.3634 -1.0222 -0.1062 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8020 -0.0523 -2.9707 33 1 0.7878 1.7324 1.6081 34 1 -1.1099 6.2871 -1.3328 35 1 -1.4904 4.5493 -1.4014 36 1 -1.8643 5.4854 0.0657 37 1 1.2327 2.4611 3.5434 38 1 1.5079 3.5404 5.7392 39 1 2.1996 5.9000 5.8734 40 1 2.6186 7.1792 3.8119 41 1 1.5044 6.8016 0.9325 42 1 3.1846 7.0769 1.4512 43 1 2.7772 5.6430 0.4786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573980321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:22 Heat of formation + Delta-G solvation = -81.389598 kcal Electronic energy + Delta-G solvation = -24468.060828 eV Core-core repulsion = 21091.375550 eV Total energy + Delta-G solvation = -3376.685278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.92243 -40.16746 -38.35705 -37.28518 -35.00010 -33.85890 -33.25799 -31.26555 -29.36635 -28.57371 -27.68955 -26.61814 -24.66354 -23.22028 -22.46278 -21.44552 -21.12631 -18.96721 -18.40803 -17.94248 -17.73054 -17.05644 -16.86942 -16.27373 -15.86628 -15.55551 -15.21417 -14.80039 -14.72110 -14.41326 -14.25119 -13.93964 -13.87622 -13.53102 -13.47590 -13.14252 -13.08002 -12.87661 -12.77866 -12.72389 -12.52353 -12.02561 -11.98991 -11.88059 -11.82564 -11.76451 -11.58791 -11.45538 -11.12704 -10.46621 -9.62999 -9.48341 -9.37239 -8.09537 -6.22235 0.39614 0.56808 1.10139 1.42868 1.43915 1.54284 1.78180 2.43292 2.90998 3.16284 3.33612 3.73420 3.95727 4.03180 4.18321 4.20025 4.25840 4.26735 4.35357 4.42182 4.50299 4.54643 4.61991 4.65549 4.76295 4.90675 4.92970 4.98000 5.02321 5.13235 5.19876 5.24286 5.27893 5.39106 5.45170 5.63718 5.67200 5.71554 5.78586 5.81251 6.15327 6.21655 6.30864 6.65258 6.70836 6.89672 7.46734 8.94863 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.006193 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.535940 B = 4519.802764 C = 5155.690052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.226 3.774 4 H -0.034 1.034 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.013 3.987 8 N -0.919 5.919 9 Si 0.957 3.043 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 N -0.648 5.648 14 C 0.146 3.854 15 H 0.106 0.894 16 C 0.445 3.555 17 O -0.531 6.531 18 O -0.357 6.357 19 C 0.025 3.975 20 C -0.096 4.096 21 C -0.100 4.100 22 C -0.136 4.136 23 C -0.112 4.112 24 C -0.127 4.127 25 C -0.085 4.085 26 C -0.116 4.116 27 H 0.049 0.951 28 H 0.025 0.975 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.337 0.663 34 H 0.136 0.864 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.049 12.724 9.295 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.158 4.158 3 C 0.118 3.882 4 H -0.017 1.017 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.281 5.281 14 C 0.033 3.967 15 H 0.124 0.876 16 C 0.287 3.713 17 O -0.421 6.421 18 O -0.272 6.272 19 C -0.068 4.068 20 C -0.097 4.097 21 C -0.118 4.118 22 C -0.154 4.154 23 C -0.130 4.130 24 C -0.144 4.144 25 C -0.085 4.085 26 C -0.173 4.173 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.136 0.864 38 H 0.160 0.840 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.718 12.437 9.387 16.281 hybrid contribution -0.263 -0.539 -1.252 1.388 sum -4.981 11.898 8.136 15.250 Atomic orbital electron populations 1.21696 0.96776 1.00734 0.99956 1.21604 0.93620 0.98830 1.01779 1.19024 0.94631 0.90803 0.83731 1.01670 1.21390 0.91966 1.37258 1.04556 0.92599 1.25682 1.02442 0.95032 0.95379 1.70007 1.36433 1.39514 1.09917 0.85563 0.80472 0.78634 0.77024 1.20228 1.20943 1.19318 1.61058 1.36004 1.00027 1.31038 1.20211 0.90683 0.90526 0.95299 0.87608 1.25388 0.92761 0.78223 0.74915 1.90568 1.40590 1.52414 1.58495 1.86576 1.36864 1.41804 1.61969 1.23543 0.81214 1.02908 0.99133 1.19331 1.03430 0.94365 0.92541 1.21111 0.98488 0.99908 0.92316 1.21394 1.00757 0.96046 0.97214 1.21518 0.97958 0.94071 0.99440 1.21282 1.01117 1.01046 0.90995 1.20049 0.98338 0.92925 0.97211 1.20888 1.02868 0.99691 0.93808 0.93177 0.95543 0.92150 0.90792 0.93817 0.92927 0.84212 0.84583 0.93108 0.91657 0.86396 0.83979 0.82946 0.83210 0.90074 0.89418 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 9.63 71.98 0.69 -4.96 16 2 C -0.12 -5.88 5.37 30.59 0.16 -5.72 16 3 C 0.23 11.62 1.85 44.17 0.08 11.70 16 4 H -0.03 -1.98 7.55 -2.39 -0.02 -2.00 16 5 C -0.51 -28.46 8.44 25.60 0.22 -28.25 16 6 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.74 5.29 84.65 0.45 1.18 16 8 N -0.92 -52.89 11.29 21.45 0.24 -52.64 16 9 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 13 N -0.65 -28.71 4.90 -481.04 -2.36 -31.07 16 14 C 0.15 5.85 1.99 43.42 0.09 5.94 16 15 H 0.11 4.64 5.88 -2.39 -0.01 4.62 16 16 C 0.45 17.40 6.55 71.23 0.47 17.87 16 17 O -0.53 -22.39 15.67 21.96 0.34 -22.05 16 18 O -0.36 -11.89 8.98 -51.42 -0.46 -12.35 16 19 C 0.03 0.63 10.56 113.37 1.20 1.83 16 20 C -0.10 -3.32 5.07 -19.86 -0.10 -3.42 16 21 C -0.10 -3.25 9.32 22.27 0.21 -3.04 16 22 C -0.14 -3.46 10.05 22.27 0.22 -3.24 16 23 C -0.11 -2.43 10.05 22.27 0.22 -2.21 16 24 C -0.13 -2.92 9.70 22.27 0.22 -2.71 16 25 C -0.08 -2.46 5.87 -19.86 -0.12 -2.57 16 26 C -0.12 -2.99 8.69 71.24 0.62 -2.37 16 27 H 0.05 1.99 6.66 -2.39 -0.02 1.97 16 28 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.07 4.06 5.94 -2.38 -0.01 4.05 16 31 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.34 14.45 4.95 -89.70 -0.44 14.00 16 34 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 36 H 0.06 1.54 8.13 -2.38 -0.02 1.52 16 37 H 0.12 4.02 6.77 -2.91 -0.02 4.00 16 38 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 39 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 41 H 0.08 1.94 7.42 -2.39 -0.02 1.92 16 42 H 0.09 1.77 8.09 -2.39 -0.02 1.76 16 43 H 0.05 1.60 6.12 -2.39 -0.01 1.59 16 Total: -1.00 -65.58 348.62 4.98 -60.60 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.56 Total: 31.55 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 4.62 Total: -19.96 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -2.12 Total: -83.71 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.12 Total: -34.40 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -65.58 4.98 -60.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573980321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.790 kcal (2) G-P(sol) polarization free energy of solvation -65.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds