Wall clock time and date at job start Tue Mar 31 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47437 * 2 1 4 4 H 1.08997 * 109.47079 * 54.99621 * 3 2 1 5 5 C 1.50697 * 109.47489 * 175.00170 * 3 2 1 6 6 H 1.07993 * 120.00109 * 120.00004 * 5 3 2 7 7 C 1.37881 * 119.99811 * 299.99966 * 5 3 2 8 8 N 1.31512 * 119.99727 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99997 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47240 * 59.99808 * 9 7 5 11 11 H 1.48502 * 109.47055 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46786 * 299.99743 * 9 7 5 13 13 N 1.46506 * 109.46834 * 295.00079 * 3 2 1 14 14 C 1.34775 * 120.00019 * 84.99642 * 13 3 2 15 15 O 1.21280 * 119.99930 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99971 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47205 * 180.02562 * 16 14 13 18 18 C 1.42898 * 114.00186 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47171 * 180.02562 * 18 17 16 20 20 C 1.38256 * 120.00123 * 359.97438 * 19 18 17 21 21 C 1.38207 * 120.00069 * 180.02562 * 20 19 18 22 22 C 1.38264 * 120.00115 * 359.97438 * 21 20 19 23 23 C 1.38204 * 119.99572 * 359.97438 * 22 21 20 24 24 C 1.38211 * 119.99896 * 179.72743 * 19 18 17 25 25 C 1.50706 * 120.00115 * 0.02562 * 24 19 18 26 26 H 1.09005 * 109.47504 * 60.00307 * 1 2 3 27 27 H 1.09005 * 109.47319 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47448 * 299.99936 * 1 2 3 29 29 H 1.09007 * 109.47380 * 240.00124 * 2 1 3 30 30 H 1.09000 * 109.47708 * 120.00133 * 2 1 3 31 31 H 0.97006 * 119.99800 * 179.97438 * 8 7 5 32 32 H 0.96995 * 119.99976 * 264.99405 * 13 3 2 33 33 H 1.09001 * 109.47017 * 60.00358 * 16 14 13 34 34 H 1.08999 * 109.47472 * 300.00035 * 16 14 13 35 35 H 1.09002 * 109.47259 * 300.00293 * 18 17 16 36 36 H 1.09001 * 109.47074 * 60.00315 * 18 17 16 37 37 H 1.08009 * 119.99937 * 359.97438 * 20 19 18 38 38 H 1.07996 * 120.00233 * 179.97438 * 21 20 19 39 39 H 1.07995 * 119.99863 * 179.97438 * 22 21 20 40 40 H 1.08011 * 119.99940 * 179.97438 * 23 22 21 41 41 H 1.08995 * 109.47197 * 90.00000 * 25 24 19 42 42 H 1.09002 * 109.46866 * 209.99739 * 25 24 19 43 43 H 1.08996 * 109.46670 * 329.99122 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8812 1.3818 10 1 6.4994 2.2815 1.3821 11 1 6.3978 0.2167 2.6503 12 1 6.5974 0.1472 0.2348 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3393 2.6327 -0.4342 16 6 0.0367 3.3386 -2.6545 17 8 -1.2885 3.8585 -2.5297 18 6 -1.7654 4.5221 -3.7020 19 6 -3.1640 5.0281 -3.4590 20 6 -3.7748 4.8121 -2.2376 21 6 -5.0577 5.2757 -2.0150 22 6 -5.7300 5.9559 -3.0135 23 6 -5.1190 6.1726 -4.2340 24 6 -3.8342 5.7124 -4.4554 25 6 -3.1665 5.9521 -5.7850 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8292 -0.0610 2.9499 32 1 2.2719 2.1232 -1.9978 33 1 0.0680 2.6145 -3.4687 34 1 0.7280 4.1541 -2.8668 35 1 -1.1111 5.3619 -3.9357 36 1 -1.7718 3.8228 -4.5381 37 1 -3.2498 4.2805 -1.4577 38 1 -5.5350 5.1067 -1.0610 39 1 -6.7326 6.3177 -2.8396 40 1 -5.6443 6.7036 -5.0142 41 1 -3.3878 5.1233 -6.4574 42 1 -3.5404 6.8804 -6.2172 43 1 -2.0885 6.0263 -5.6421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598697562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:10 Heat of formation + Delta-G solvation = -69.886420 kcal Electronic energy + Delta-G solvation = -22727.332567 eV Core-core repulsion = 19351.146103 eV Total energy + Delta-G solvation = -3376.186463 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.77343 -39.04468 -37.26086 -34.94836 -33.18400 -32.40220 -31.74056 -30.96867 -28.28715 -27.24167 -26.46578 -25.56827 -22.96316 -21.93510 -20.96138 -20.36711 -19.32897 -17.38838 -16.78197 -16.49586 -16.26038 -15.56748 -15.27944 -14.92481 -14.74093 -14.57597 -14.19818 -13.83302 -13.64136 -13.17262 -12.91469 -12.69929 -12.62583 -12.51264 -12.08571 -11.87797 -11.74115 -11.39902 -11.24426 -11.03490 -10.99920 -10.87825 -10.81581 -10.32239 -10.17239 -9.80960 -9.60993 -9.06475 -8.91272 -8.82011 -8.65071 -8.49487 -7.82259 -6.12370 -4.22112 1.23121 1.35386 3.24988 3.26648 3.30855 3.34030 3.38811 3.67511 4.27462 4.45440 4.69987 4.72310 4.89536 5.04585 5.08651 5.13851 5.18681 5.22263 5.29754 5.38181 5.46131 5.48258 5.52459 5.57101 5.73089 5.94726 6.06495 6.37413 6.41302 6.48071 6.49653 6.54392 6.68223 6.95534 7.05157 7.10318 7.23962 7.38146 7.45456 7.62423 7.74419 7.90667 8.18370 8.65753 8.77991 9.14026 9.45232 10.92920 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031815 B = 0.002823 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.869282 B = 9917.705594 C =10356.543073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.501 3.499 15 O -0.528 6.528 16 C 0.042 3.958 17 O -0.357 6.357 18 C 0.101 3.899 19 C -0.089 4.089 20 C -0.087 4.087 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.085 4.085 25 C -0.118 4.118 26 H 0.038 0.962 27 H 0.022 0.978 28 H 0.050 0.950 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.388 0.612 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.140 0.860 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.010 9.272 -15.142 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.358 5.358 14 C 0.285 3.715 15 O -0.405 6.405 16 C -0.038 4.038 17 O -0.275 6.275 18 C 0.025 3.975 19 C -0.089 4.089 20 C -0.105 4.105 21 C -0.145 4.145 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.085 4.085 25 C -0.174 4.174 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.659 9.123 -14.080 21.017 hybrid contribution 1.433 -0.007 -0.517 1.523 sum -11.226 9.116 -14.597 20.547 Atomic orbital electron populations 1.21841 0.98279 0.98055 1.01312 1.21941 0.92648 0.99791 1.02270 1.18786 0.94143 0.89141 0.80812 0.93265 1.21189 0.90674 1.39179 1.06332 0.92128 1.24889 0.98604 0.94810 0.95375 1.69888 1.35226 1.37467 1.09322 0.86512 0.84844 0.78296 0.77453 1.20195 1.21128 1.20178 1.46408 1.14261 1.56396 1.18747 1.19945 0.83135 0.79897 0.88568 1.90693 1.51110 1.58652 1.40017 1.22347 0.85190 0.98399 0.97858 1.87991 1.29469 1.74553 1.35470 1.21241 0.92222 0.95792 0.88265 1.19525 0.95113 0.99614 0.94617 1.21216 0.94484 0.97715 0.97106 1.21219 0.95164 0.98800 0.99327 1.21138 0.99797 0.99206 0.93667 1.20904 0.94551 1.01428 0.97467 1.19605 0.94730 0.98548 0.95649 1.20827 1.00571 1.02148 0.93861 0.94265 0.95856 0.93131 0.95040 0.88280 0.92478 0.78013 0.90923 0.90842 0.91941 0.91980 0.84201 0.85993 0.86282 0.86200 0.91048 0.91463 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.15 0.32 -2.80 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.81 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.97 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.64 11.29 55.43 0.63 -24.02 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.71 -14.35 5.02 -54.93 -0.28 -14.63 16 14 C 0.50 9.92 6.47 -10.99 -0.07 9.85 16 15 O -0.53 -12.68 13.64 -14.35 -0.20 -12.88 16 16 C 0.04 0.61 6.42 36.00 0.23 0.84 16 17 O -0.36 -5.58 8.36 -55.14 -0.46 -6.04 16 18 C 0.10 1.19 5.05 36.01 0.18 1.37 16 19 C -0.09 -1.11 5.88 -104.62 -0.62 -1.72 16 20 C -0.09 -1.20 9.38 -39.59 -0.37 -1.57 16 21 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 22 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 23 C -0.13 -1.23 9.70 -39.59 -0.38 -1.61 16 24 C -0.09 -0.89 5.88 -104.62 -0.62 -1.51 16 25 C -0.12 -0.88 9.60 36.01 0.35 -0.53 16 26 H 0.04 0.87 5.65 -51.93 -0.29 0.57 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 29 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.36 16 31 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.39 6.63 8.54 -40.82 -0.35 6.28 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.63 7.48 -51.93 -0.39 0.24 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.14 2.19 7.01 -52.48 -0.37 1.82 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 43 H 0.07 0.47 6.63 -51.93 -0.34 0.12 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -31.42 351.71 -9.12 -40.54 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.62 Total: 6.68 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -2.47 Total: -10.37 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.35 Total: -38.65 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.66 Total: -18.92 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.42 -9.12 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598697562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.350 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds