Wall clock time and date at job start Tue Mar 31 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47437 * 2 1 4 4 H 1.08997 * 109.47079 * 54.99621 * 3 2 1 5 5 C 1.50697 * 109.47489 * 175.00170 * 3 2 1 6 6 H 1.07993 * 120.00109 * 120.00004 * 5 3 2 7 7 C 1.37881 * 119.99811 * 299.99966 * 5 3 2 8 8 N 1.31512 * 119.99727 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99997 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47240 * 59.99808 * 9 7 5 11 11 H 1.48502 * 109.47055 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46786 * 299.99743 * 9 7 5 13 13 N 1.46506 * 109.46834 * 295.00079 * 3 2 1 14 14 C 1.34775 * 120.00019 * 84.99642 * 13 3 2 15 15 O 1.21280 * 119.99930 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99971 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47205 * 180.02562 * 16 14 13 18 18 C 1.42898 * 114.00186 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47171 * 180.02562 * 18 17 16 20 20 C 1.38256 * 120.00123 * 359.97438 * 19 18 17 21 21 C 1.38207 * 120.00069 * 180.02562 * 20 19 18 22 22 C 1.38264 * 120.00115 * 359.97438 * 21 20 19 23 23 C 1.38204 * 119.99572 * 359.97438 * 22 21 20 24 24 C 1.38211 * 119.99896 * 179.72743 * 19 18 17 25 25 C 1.50706 * 120.00115 * 0.02562 * 24 19 18 26 26 H 1.09005 * 109.47504 * 60.00307 * 1 2 3 27 27 H 1.09005 * 109.47319 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47448 * 299.99936 * 1 2 3 29 29 H 1.09007 * 109.47380 * 240.00124 * 2 1 3 30 30 H 1.09000 * 109.47708 * 120.00133 * 2 1 3 31 31 H 0.97006 * 119.99800 * 179.97438 * 8 7 5 32 32 H 0.96995 * 119.99976 * 264.99405 * 13 3 2 33 33 H 1.09001 * 109.47017 * 60.00358 * 16 14 13 34 34 H 1.08999 * 109.47472 * 300.00035 * 16 14 13 35 35 H 1.09002 * 109.47259 * 300.00293 * 18 17 16 36 36 H 1.09001 * 109.47074 * 60.00315 * 18 17 16 37 37 H 1.08009 * 119.99937 * 359.97438 * 20 19 18 38 38 H 1.07996 * 120.00233 * 179.97438 * 21 20 19 39 39 H 1.07995 * 119.99863 * 179.97438 * 22 21 20 40 40 H 1.08011 * 119.99940 * 179.97438 * 23 22 21 41 41 H 1.08995 * 109.47197 * 90.00000 * 25 24 19 42 42 H 1.09002 * 109.46866 * 209.99739 * 25 24 19 43 43 H 1.08996 * 109.46670 * 329.99122 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8812 1.3818 10 1 6.4994 2.2815 1.3821 11 1 6.3978 0.2167 2.6503 12 1 6.5974 0.1472 0.2348 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3393 2.6327 -0.4342 16 6 0.0367 3.3386 -2.6545 17 8 -1.2885 3.8585 -2.5297 18 6 -1.7654 4.5221 -3.7020 19 6 -3.1640 5.0281 -3.4590 20 6 -3.7748 4.8121 -2.2376 21 6 -5.0577 5.2757 -2.0150 22 6 -5.7300 5.9559 -3.0135 23 6 -5.1190 6.1726 -4.2340 24 6 -3.8342 5.7124 -4.4554 25 6 -3.1665 5.9521 -5.7850 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8292 -0.0610 2.9499 32 1 2.2719 2.1232 -1.9978 33 1 0.0680 2.6145 -3.4687 34 1 0.7280 4.1541 -2.8668 35 1 -1.1111 5.3619 -3.9357 36 1 -1.7718 3.8228 -4.5381 37 1 -3.2498 4.2805 -1.4577 38 1 -5.5350 5.1067 -1.0610 39 1 -6.7326 6.3177 -2.8396 40 1 -5.6443 6.7036 -5.0142 41 1 -3.3878 5.1233 -6.4574 42 1 -3.5404 6.8804 -6.2172 43 1 -2.0885 6.0263 -5.6421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598697562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:09 Heat of formation + Delta-G solvation = -88.540780 kcal Electronic energy + Delta-G solvation = -22728.141480 eV Core-core repulsion = 19351.146103 eV Total energy + Delta-G solvation = -3376.995377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85520 -40.39322 -38.43505 -36.80507 -34.30651 -33.95651 -32.98841 -32.46949 -29.73630 -28.44738 -27.64511 -26.57526 -24.89664 -22.80945 -22.20098 -21.69393 -21.11782 -19.02895 -17.96556 -17.65595 -17.37602 -17.04559 -16.92735 -16.13876 -15.99759 -15.81006 -15.45814 -15.02917 -14.71967 -14.57371 -14.21692 -13.92723 -13.89158 -13.54418 -13.17083 -13.14395 -13.07968 -12.94481 -12.82730 -12.73840 -12.63935 -12.18112 -12.06537 -11.86931 -11.68893 -11.58657 -11.06341 -10.82816 -10.61775 -10.47429 -9.67493 -9.63064 -9.45589 -8.15223 -6.32996 0.41012 0.49445 1.45636 1.47662 1.55351 1.83904 2.06178 2.43662 2.83693 3.12604 3.16903 3.84989 3.99423 4.01080 4.10519 4.22727 4.25998 4.31912 4.36593 4.47686 4.49333 4.53094 4.56348 4.69217 4.75963 4.87954 4.90277 4.98742 5.05833 5.16570 5.24916 5.33347 5.43497 5.53965 5.56164 5.62658 5.63821 5.68453 5.79408 5.92068 6.11901 6.16925 6.21639 6.75321 7.01296 7.34559 7.61130 8.90097 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031815 B = 0.002823 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.869282 B = 9917.705594 C =10356.543073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.972 3.028 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.702 5.702 14 C 0.493 3.507 15 O -0.579 6.579 16 C 0.054 3.946 17 O -0.392 6.392 18 C 0.100 3.900 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.142 4.142 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.087 4.087 25 C -0.116 4.116 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.021 0.979 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.265 0.735 32 H 0.407 0.593 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.540 10.326 -18.649 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.353 5.353 14 C 0.279 3.721 15 O -0.459 6.459 16 C -0.026 4.026 17 O -0.311 6.311 18 C 0.024 3.976 19 C -0.107 4.107 20 C -0.137 4.137 21 C -0.160 4.160 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.087 4.087 25 C -0.173 4.173 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.242 0.758 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.144 0.856 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.178 10.191 -17.644 23.737 hybrid contribution 1.189 -0.283 0.568 1.347 sum -10.989 9.909 -17.076 22.595 Atomic orbital electron populations 1.21674 0.97207 0.99050 1.00110 1.21787 0.93480 0.99248 1.01421 1.18350 0.93678 0.89078 0.81283 0.98764 1.21561 0.91295 1.38964 1.06788 0.90703 1.25804 1.03410 0.94399 0.95022 1.70055 1.37205 1.38353 1.09882 0.85408 0.78984 0.78443 0.77550 1.19645 1.21390 1.18736 1.46129 1.15211 1.56216 1.17789 1.20971 0.82048 0.78980 0.90072 1.90678 1.52457 1.60359 1.42427 1.22280 0.85620 0.99865 0.94808 1.87973 1.29936 1.75280 1.37899 1.21465 0.92052 0.96691 0.87373 1.19763 0.95848 1.00464 0.94667 1.21097 0.95651 0.99535 0.97448 1.21372 0.94808 0.99463 1.00396 1.21460 1.00795 0.98325 0.93372 1.21343 0.94465 1.00687 0.97891 1.19973 0.94997 0.97367 0.96372 1.20902 1.00777 1.03402 0.92199 0.93834 0.93582 0.95949 0.93705 0.91063 0.92629 0.75810 0.87323 0.87579 0.89879 0.89801 0.87672 0.85565 0.83739 0.83203 0.89896 0.89824 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.51 71.98 0.61 -5.12 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.37 2.24 44.24 0.10 14.47 16 4 H -0.01 -0.34 7.58 -2.39 -0.02 -0.36 16 5 C -0.55 -28.73 8.73 25.60 0.22 -28.50 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.01 0.73 5.29 84.66 0.45 1.18 16 8 N -0.92 -52.82 11.29 21.45 0.24 -52.57 16 9 Si 0.97 41.80 29.54 68.60 2.03 43.83 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 13 N -0.70 -28.34 5.02 -446.09 -2.24 -30.58 16 14 C 0.49 19.62 6.47 87.66 0.57 20.19 16 15 O -0.58 -29.19 13.64 16.01 0.22 -28.98 16 16 C 0.05 1.44 6.42 71.24 0.46 1.90 16 17 O -0.39 -12.11 8.36 -129.94 -1.09 -13.19 16 18 C 0.10 2.16 5.05 71.24 0.36 2.52 16 19 C -0.11 -2.61 5.88 -19.87 -0.12 -2.73 16 20 C -0.12 -3.44 9.38 22.27 0.21 -3.23 16 21 C -0.14 -3.43 10.05 22.27 0.22 -3.21 16 22 C -0.12 -2.30 10.05 22.27 0.22 -2.07 16 23 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 24 C -0.09 -1.62 5.88 -19.86 -0.12 -1.74 16 25 C -0.12 -1.32 9.60 71.24 0.68 -0.64 16 26 H 0.04 1.96 5.65 -2.38 -0.01 1.95 16 27 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.02 1.12 7.85 -2.39 -0.02 1.10 16 29 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.07 3.97 5.95 -2.39 -0.01 3.96 16 31 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 32 H 0.41 13.21 8.54 -92.71 -0.79 12.42 16 33 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 1.43 7.48 -2.39 -0.02 1.41 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.11 3.68 7.01 -2.91 -0.02 3.66 16 38 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 39 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.15 1.61 8.06 -2.90 -0.02 1.59 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 43 H 0.07 0.75 6.63 -2.39 -0.02 0.73 16 Total: -1.00 -72.79 351.71 3.63 -69.16 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.21 Total: 27.06 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 4.26 Total: -14.73 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.00 Total: -83.15 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.87 Total: -42.17 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -72.79 3.63 -69.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598697562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.380 kcal (2) G-P(sol) polarization free energy of solvation -72.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds