Wall clock time and date at job start Tue Mar 31 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 O 1.42905 * 109.46823 * 179.97438 * 16 14 13 18 18 C 1.42905 * 113.99816 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.47009 * 179.97438 * 18 17 16 20 20 C 1.38262 * 120.00090 * 0.02562 * 19 18 17 21 21 C 1.38213 * 119.99769 * 179.97438 * 20 19 18 22 22 C 1.38257 * 120.00254 * 0.02562 * 21 20 19 23 23 C 1.38210 * 119.99772 * 359.97438 * 22 21 20 24 24 C 1.38217 * 120.00315 * 179.72655 * 19 18 17 25 25 C 1.50700 * 119.99414 * 0.02562 * 24 19 18 26 26 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 28 28 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 29 29 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 30 30 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 31 31 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 33 33 H 1.09005 * 109.47081 * 299.98904 * 16 14 13 34 34 H 1.08997 * 109.47516 * 59.99675 * 16 14 13 35 35 H 1.08993 * 109.47251 * 299.99907 * 18 17 16 36 36 H 1.09000 * 109.47000 * 59.99998 * 18 17 16 37 37 H 1.07996 * 119.99560 * 359.97438 * 20 19 18 38 38 H 1.07998 * 119.99532 * 180.02562 * 21 20 19 39 39 H 1.07995 * 119.99921 * 179.97438 * 22 21 20 40 40 H 1.08008 * 119.99563 * 179.97438 * 23 22 21 41 41 H 1.09006 * 109.46912 * 90.00043 * 25 24 19 42 42 H 1.09003 * 109.46843 * 209.99475 * 25 24 19 43 43 H 1.08997 * 109.47350 * 330.00030 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 8 -1.2885 3.8583 2.5298 18 6 -1.7658 4.5208 3.7026 19 6 -3.1643 5.0268 3.4597 20 6 -3.7748 4.8119 2.2379 21 6 -5.0576 5.2756 2.0153 22 6 -5.7303 5.9548 3.0142 23 6 -5.1200 6.1696 4.2355 24 6 -3.8392 5.7004 4.4603 25 6 -3.1761 5.9293 5.7941 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8770 0.4827 -2.1133 32 1 2.2720 2.1230 1.9979 33 1 0.0680 2.6142 3.4688 34 1 0.7281 4.1539 2.8669 35 1 -1.7723 3.8209 4.5381 36 1 -1.1116 5.3605 3.9372 37 1 -3.2491 4.2817 1.4576 38 1 -5.5346 5.1073 1.0611 39 1 -6.7325 6.3174 2.8401 40 1 -5.6454 6.7006 5.0157 41 1 -2.6348 6.8753 5.7732 42 1 -3.9347 5.9620 6.5761 43 1 -2.4791 5.1164 5.9976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598697563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:13 Heat of formation + Delta-G solvation = -61.822620 kcal Electronic energy + Delta-G solvation = -22821.454160 eV Core-core repulsion = 19445.617369 eV Total energy + Delta-G solvation = -3375.836791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83891 -39.23488 -37.38514 -35.21898 -33.22878 -32.43309 -31.86821 -31.47873 -28.47415 -27.44053 -26.74512 -25.67756 -22.67076 -21.99458 -21.08079 -20.76432 -19.61140 -17.54063 -16.83751 -16.61949 -16.35752 -15.88304 -15.50539 -15.00197 -14.91270 -14.58026 -14.31422 -13.89845 -13.71106 -13.24956 -13.20086 -12.88339 -12.74608 -12.54872 -12.23774 -12.06323 -11.93986 -11.83510 -11.66856 -11.09628 -11.07058 -10.94110 -10.88061 -10.62562 -9.93538 -9.87807 -9.54978 -9.24364 -9.05880 -8.86546 -8.76220 -8.69525 -8.07936 -6.22217 -4.24820 1.18705 1.30861 3.17035 3.20154 3.23962 3.35628 3.41226 3.63005 4.25812 4.31266 4.65600 4.66602 4.84224 4.99886 5.03473 5.08111 5.11325 5.17298 5.23558 5.32755 5.35764 5.40020 5.43454 5.53678 5.68544 5.90459 5.97608 6.01883 6.03466 6.18684 6.32969 6.44419 6.49335 6.65845 6.70502 6.84179 6.90741 6.95854 7.05090 7.28365 7.29613 7.50465 8.14454 8.50455 8.74851 8.93433 9.38709 10.89783 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031607 B = 0.002999 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.670873 B = 9333.359043 C = 9819.137619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.245 3.755 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.259 1.259 12 H -0.294 1.294 13 N -0.700 5.700 14 C 0.503 3.497 15 O -0.529 6.529 16 C 0.043 3.957 17 O -0.358 6.358 18 C 0.102 3.898 19 C -0.089 4.089 20 C -0.088 4.088 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.085 4.085 25 C -0.118 4.118 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.267 0.733 32 H 0.395 0.605 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.185 8.357 13.970 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.141 3.859 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.184 1.184 12 H -0.222 1.222 13 N -0.351 5.351 14 C 0.287 3.713 15 O -0.406 6.406 16 C -0.037 4.037 17 O -0.276 6.276 18 C 0.025 3.975 19 C -0.089 4.089 20 C -0.106 4.106 21 C -0.145 4.145 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.085 4.085 25 C -0.174 4.174 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.228 0.772 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.157 0.843 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.684 8.264 12.999 23.452 hybrid contribution 0.092 -0.472 -0.135 0.500 sum -17.592 7.791 12.864 23.145 Atomic orbital electron populations 1.21877 0.96866 0.99054 1.02338 1.22296 0.94399 0.99934 1.01120 1.19151 0.95595 0.88461 0.82662 0.93259 1.21044 0.88567 1.39845 1.07877 0.90171 1.24833 0.94872 0.95130 0.97672 1.69866 1.08697 1.44503 1.29839 0.86905 0.81006 0.79967 0.80887 1.20215 1.18404 1.22155 1.46068 1.14504 1.56300 1.18180 1.20004 0.82876 0.79662 0.88748 1.90689 1.51192 1.58662 1.40072 1.22305 0.85366 0.98581 0.97460 1.87982 1.29355 1.74642 1.35590 1.21247 0.92255 0.95887 0.88102 1.19521 0.95040 0.99756 0.94594 1.21200 0.94490 0.97764 0.97113 1.21214 0.95164 0.98869 0.99290 1.21142 0.99786 0.99183 0.93669 1.20910 0.94714 1.01134 0.97552 1.19607 0.94745 0.98532 0.95579 1.20833 1.00695 1.02322 0.93596 0.94968 0.92904 0.92861 0.92758 0.92279 0.92264 0.77209 0.90688 0.90520 0.91883 0.91851 0.84272 0.86019 0.86264 0.86162 0.90994 0.91439 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.52 37.16 0.32 -2.62 16 2 C -0.14 -3.07 5.11 -26.73 -0.14 -3.21 16 3 C 0.24 5.74 1.83 -69.08 -0.13 5.61 16 4 H 0.05 1.29 6.63 -51.93 -0.34 0.95 16 5 C -0.54 -14.29 9.31 -34.44 -0.32 -14.61 16 6 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 9 Si 0.88 21.74 24.41 -169.99 -4.15 17.59 16 10 H -0.28 -6.57 6.83 56.52 0.39 -6.18 16 11 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 N -0.70 -13.44 5.02 -54.93 -0.28 -13.72 16 14 C 0.50 9.33 6.47 -10.98 -0.07 9.26 16 15 O -0.53 -11.88 13.64 -14.35 -0.20 -12.07 16 16 C 0.04 0.58 6.42 36.01 0.23 0.81 16 17 O -0.36 -5.28 8.36 -55.14 -0.46 -5.74 16 18 C 0.10 1.13 5.05 36.00 0.18 1.31 16 19 C -0.09 -1.06 5.88 -104.62 -0.62 -1.68 16 20 C -0.09 -1.15 9.38 -39.58 -0.37 -1.52 16 21 C -0.13 -1.43 10.05 -39.58 -0.40 -1.82 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 23 C -0.13 -1.18 9.70 -39.59 -0.38 -1.56 16 24 C -0.08 -0.85 5.88 -104.63 -0.62 -1.46 16 25 C -0.12 -0.84 9.60 36.01 0.35 -0.49 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.06 5.65 -51.93 -0.29 0.76 16 28 H 0.05 1.15 7.85 -51.93 -0.41 0.75 16 29 H 0.05 1.27 3.22 -51.93 -0.17 1.10 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.39 6.49 8.54 -40.82 -0.35 6.14 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.59 7.48 -51.93 -0.39 0.20 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.14 2.07 7.01 -52.49 -0.37 1.71 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 43 H 0.07 0.44 6.63 -51.93 -0.34 0.09 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -32.47 344.95 -8.06 -40.53 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.49 Total: 5.18 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.46 Total: -11.45 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.50 Total: -39.23 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.66 Total: -17.81 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.47 -8.06 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598697563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.295 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds