Wall clock time and date at job start Tue Mar 31 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 O 1.42905 * 109.46823 * 179.97438 * 16 14 13 18 18 C 1.42905 * 113.99816 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.47009 * 179.97438 * 18 17 16 20 20 C 1.38262 * 120.00090 * 0.02562 * 19 18 17 21 21 C 1.38213 * 119.99769 * 179.97438 * 20 19 18 22 22 C 1.38257 * 120.00254 * 0.02562 * 21 20 19 23 23 C 1.38210 * 119.99772 * 359.97438 * 22 21 20 24 24 C 1.38217 * 120.00315 * 179.72655 * 19 18 17 25 25 C 1.50700 * 119.99414 * 0.02562 * 24 19 18 26 26 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 28 28 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 29 29 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 30 30 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 31 31 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 33 33 H 1.09005 * 109.47081 * 299.98904 * 16 14 13 34 34 H 1.08997 * 109.47516 * 59.99675 * 16 14 13 35 35 H 1.08993 * 109.47251 * 299.99907 * 18 17 16 36 36 H 1.09000 * 109.47000 * 59.99998 * 18 17 16 37 37 H 1.07996 * 119.99560 * 359.97438 * 20 19 18 38 38 H 1.07998 * 119.99532 * 180.02562 * 21 20 19 39 39 H 1.07995 * 119.99921 * 179.97438 * 22 21 20 40 40 H 1.08008 * 119.99563 * 179.97438 * 23 22 21 41 41 H 1.09006 * 109.46912 * 90.00043 * 25 24 19 42 42 H 1.09003 * 109.46843 * 209.99475 * 25 24 19 43 43 H 1.08997 * 109.47350 * 330.00030 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 8 -1.2885 3.8583 2.5298 18 6 -1.7658 4.5208 3.7026 19 6 -3.1643 5.0268 3.4597 20 6 -3.7748 4.8119 2.2379 21 6 -5.0576 5.2756 2.0153 22 6 -5.7303 5.9548 3.0142 23 6 -5.1200 6.1696 4.2355 24 6 -3.8392 5.7004 4.4603 25 6 -3.1761 5.9293 5.7941 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8770 0.4827 -2.1133 32 1 2.2720 2.1230 1.9979 33 1 0.0680 2.6142 3.4688 34 1 0.7281 4.1539 2.8669 35 1 -1.7723 3.8209 4.5381 36 1 -1.1116 5.3605 3.9372 37 1 -3.2491 4.2817 1.4576 38 1 -5.5346 5.1073 1.0611 39 1 -6.7325 6.3174 2.8401 40 1 -5.6454 6.7006 5.0157 41 1 -2.6348 6.8753 5.7732 42 1 -3.9347 5.9620 6.5761 43 1 -2.4791 5.1164 5.9976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598697563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:12 Heat of formation + Delta-G solvation = -82.529276 kcal Electronic energy + Delta-G solvation = -22822.352067 eV Core-core repulsion = 19445.617369 eV Total energy + Delta-G solvation = -3376.734699 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.93645 -40.43162 -38.48216 -36.96183 -34.40827 -33.96248 -33.37295 -32.51924 -29.95173 -28.69106 -27.70666 -26.58622 -24.55530 -22.86519 -22.49365 -21.72777 -21.24432 -19.22910 -17.97294 -17.91756 -17.44952 -17.23655 -16.96731 -16.23212 -16.01072 -15.79489 -15.51884 -15.13152 -14.97580 -14.69685 -14.26557 -14.07521 -13.91144 -13.79697 -13.65016 -13.23968 -13.09447 -12.95230 -12.89142 -12.76458 -12.73516 -12.40257 -11.87660 -11.86291 -11.69114 -11.39132 -11.24505 -10.87138 -10.83211 -10.61522 -9.77471 -9.67331 -9.45620 -8.38900 -6.43881 0.41018 0.49568 1.25796 1.34535 1.44275 1.76101 1.99602 2.25302 2.83752 2.96912 3.08187 3.81514 3.95766 3.99694 4.10604 4.21179 4.23311 4.25967 4.29278 4.33412 4.36848 4.46672 4.49200 4.53071 4.69267 4.83444 4.87489 4.90141 4.98658 4.99637 5.11219 5.16701 5.21799 5.33154 5.40626 5.50768 5.54083 5.63582 5.65851 5.68525 6.07652 6.13910 6.22537 6.58363 6.89940 7.19777 7.48690 8.76137 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031607 B = 0.002999 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.670873 B = 9333.359043 C = 9819.137619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.019 0.981 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.933 3.067 10 H -0.259 1.259 11 H -0.264 1.264 12 H -0.294 1.294 13 N -0.698 5.698 14 C 0.498 3.502 15 O -0.574 6.574 16 C 0.052 3.948 17 O -0.390 6.390 18 C 0.100 3.900 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.142 4.142 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.087 4.087 25 C -0.117 4.117 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.270 0.730 32 H 0.409 0.591 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.760 8.693 16.473 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.036 0.964 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.761 3.239 10 H -0.184 1.184 11 H -0.189 1.189 12 H -0.221 1.221 13 N -0.349 5.349 14 C 0.285 3.715 15 O -0.453 6.453 16 C -0.027 4.027 17 O -0.309 6.309 18 C 0.025 3.975 19 C -0.107 4.107 20 C -0.136 4.136 21 C -0.160 4.160 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.087 4.087 25 C -0.173 4.173 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.245 0.755 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.258 8.604 15.545 26.201 hybrid contribution 0.546 -0.478 -0.845 1.114 sum -18.712 8.125 14.700 25.145 Atomic orbital electron populations 1.21754 0.95408 1.00466 1.01442 1.22212 0.95604 0.98535 1.01184 1.18764 0.93236 0.89598 0.83816 0.96365 1.21285 0.90220 1.38447 1.06993 0.92142 1.25510 0.95677 0.95936 0.99769 1.69966 1.10164 1.46187 1.30848 0.86081 0.79241 0.80038 0.78532 1.18438 1.18867 1.22098 1.45868 1.15487 1.56326 1.17212 1.20920 0.81728 0.78699 0.90158 1.90674 1.52320 1.60135 1.42180 1.22269 0.85687 0.99959 0.94778 1.87960 1.29801 1.75317 1.37845 1.21456 0.92011 0.96747 0.87336 1.19761 0.95780 1.00550 0.94654 1.21100 0.95583 0.99474 0.97432 1.21375 0.94845 0.99457 1.00329 1.21460 1.00772 0.98387 0.93401 1.21335 0.94655 1.00471 0.97999 1.19965 0.94992 0.97466 0.96314 1.20903 1.01231 1.03047 0.92153 0.92277 0.92746 0.94880 0.93892 0.90897 0.92072 0.75483 0.87096 0.87677 0.89698 0.90030 0.87404 0.85486 0.83816 0.83335 0.90020 0.89866 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 8.52 71.98 0.61 -4.67 16 2 C -0.14 -5.92 5.11 30.60 0.16 -5.76 16 3 C 0.25 11.79 1.83 44.24 0.08 11.88 16 4 H 0.02 0.99 6.63 -2.39 -0.02 0.97 16 5 C -0.53 -28.67 9.31 25.60 0.24 -28.43 16 6 H 0.06 3.43 7.98 -2.91 -0.02 3.41 16 7 C 0.03 1.74 5.45 84.65 0.46 2.21 16 8 N -0.93 -55.78 13.96 21.45 0.30 -55.48 16 9 Si 0.93 45.17 24.41 68.60 1.67 46.84 16 10 H -0.26 -11.74 6.83 99.48 0.68 -11.06 16 11 H -0.26 -12.85 6.53 99.48 0.65 -12.20 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 13 N -0.70 -26.30 5.02 -446.10 -2.24 -28.54 16 14 C 0.50 18.14 6.47 87.66 0.57 18.71 16 15 O -0.57 -26.17 13.64 16.03 0.22 -25.95 16 16 C 0.05 1.29 6.42 71.24 0.46 1.75 16 17 O -0.39 -11.16 8.36 -129.94 -1.09 -12.25 16 18 C 0.10 2.02 5.05 71.23 0.36 2.38 16 19 C -0.11 -2.46 5.88 -19.86 -0.12 -2.58 16 20 C -0.12 -3.19 9.38 22.27 0.21 -2.98 16 21 C -0.14 -3.22 10.05 22.27 0.22 -2.99 16 22 C -0.12 -2.19 10.05 22.27 0.22 -1.96 16 23 C -0.13 -2.06 9.70 22.27 0.22 -1.84 16 24 C -0.09 -1.55 5.88 -19.87 -0.12 -1.67 16 25 C -0.12 -1.26 9.60 71.24 0.68 -0.57 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 2.12 5.65 -2.39 -0.01 2.11 16 28 H 0.03 1.42 7.85 -2.39 -0.02 1.40 16 29 H 0.04 1.95 3.22 -2.38 -0.01 1.94 16 30 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 31 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.41 12.92 8.54 -92.71 -0.79 12.13 16 33 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 1.31 7.48 -2.39 -0.02 1.29 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 3.51 7.01 -2.91 -0.02 3.49 16 38 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 41 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.08 0.65 8.09 -2.39 -0.02 0.63 16 43 H 0.07 0.70 6.63 -2.39 -0.02 0.68 16 Total: -1.00 -72.71 344.95 3.26 -69.46 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.13 Total: 22.47 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 4.26 Total: -16.55 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -1.94 Total: -84.01 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -0.87 Total: -38.20 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.84 kcal Total: -72.71 3.26 -69.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598697563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.074 kcal (2) G-P(sol) polarization free energy of solvation -72.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds