Wall clock time and date at job start Tue Mar 31 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46947 * 2 1 4 4 H 1.09002 * 109.47130 * 305.90491 * 3 2 1 5 5 C 1.50700 * 109.47412 * 185.90650 * 3 2 1 6 6 H 1.07991 * 120.00214 * 244.80119 * 5 3 2 7 7 C 1.37879 * 120.00004 * 64.79223 * 5 3 2 8 8 N 1.31522 * 119.99757 * 5.96396 * 7 5 3 9 9 Si 1.86794 * 120.00186 * 185.95712 * 7 5 3 10 10 H 1.48500 * 109.47173 * 94.99700 * 9 7 5 11 11 H 1.48500 * 109.47505 * 214.99957 * 9 7 5 12 12 H 1.48500 * 109.47344 * 334.99889 * 9 7 5 13 13 N 1.46499 * 109.47702 * 65.90145 * 3 2 1 14 14 C 1.34775 * 120.00217 * 275.00578 * 13 3 2 15 15 O 1.21585 * 120.00116 * 359.71798 * 14 13 3 16 16 C 1.47604 * 119.99768 * 179.97438 * 14 13 3 17 17 C 1.39731 * 120.08807 * 359.45123 * 16 14 13 18 18 C 1.37711 * 119.90852 * 179.74211 * 17 16 14 19 19 C 1.38997 * 120.08814 * 0.50741 * 18 17 16 20 20 O 1.35710 * 119.91231 * 179.74286 * 19 18 17 21 21 C 1.42897 * 116.99663 * 177.35614 * 20 19 18 22 22 C 1.52999 * 109.46789 * 156.27347 * 21 20 19 23 23 C 1.52999 * 109.47363 * 276.27150 * 21 20 19 24 24 C 1.39002 * 120.17548 * 359.76540 * 19 18 17 25 25 C 1.37707 * 120.08819 * 359.97438 * 24 19 18 26 26 H 1.08999 * 109.47213 * 60.00515 * 1 2 3 27 27 H 1.09001 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47333 * 300.00273 * 1 2 3 29 29 H 1.09001 * 109.47333 * 239.99727 * 2 1 3 30 30 H 1.08999 * 109.47213 * 119.99485 * 2 1 3 31 31 H 0.96999 * 119.99942 * 179.97438 * 8 7 5 32 32 H 0.96999 * 119.99563 * 94.99955 * 13 3 2 33 33 H 1.07995 * 120.04318 * 359.97148 * 17 16 14 34 34 H 1.07993 * 119.95448 * 180.22919 * 18 17 16 35 35 H 1.08997 * 109.47828 * 36.27206 * 21 20 19 36 36 H 1.09004 * 109.47315 * 59.99700 * 22 21 20 37 37 H 1.08999 * 109.47486 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.47388 * 299.99891 * 22 21 20 39 39 H 1.08999 * 109.47256 * 180.02562 * 23 21 20 40 40 H 1.09004 * 109.46821 * 300.00349 * 23 21 20 41 41 H 1.09000 * 109.47526 * 60.00171 * 23 21 20 42 42 H 1.07995 * 119.95640 * 179.97438 * 24 19 18 43 43 H 1.08001 * 120.03904 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5929 1.9859 -0.8324 5 6 3.5399 1.4451 -0.1462 6 1 4.1600 1.8150 0.6568 7 6 4.1204 0.9751 -1.3052 8 7 3.3659 0.6345 -2.3272 9 14 5.9783 0.8224 -1.4238 10 1 6.3841 -0.5638 -1.0785 11 1 6.4133 1.1351 -2.8088 12 1 6.6147 1.7744 -0.4783 13 7 1.6711 2.0910 1.2608 14 6 0.4556 2.6572 1.3970 15 8 -0.3329 2.6343 0.4718 16 6 0.0839 3.3100 2.6675 17 6 0.9863 3.3321 3.7341 18 6 0.6377 3.9469 4.9160 19 6 -0.6140 4.5357 5.0524 20 8 -0.9559 5.1360 6.2205 21 6 -2.2346 5.7717 6.2732 22 6 -2.7009 5.8592 7.7278 23 6 -2.1283 7.1806 5.6861 24 6 -1.5167 4.5109 3.9957 25 6 -1.1736 3.9028 2.8087 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.7743 0.3042 -3.1427 32 1 2.3016 2.1128 1.9975 33 1 1.9573 2.8709 3.6304 34 1 1.3360 3.9676 5.7395 35 1 -2.9534 5.1907 5.6955 36 1 -1.9821 6.4403 8.3055 37 1 -3.6761 6.3445 7.7681 38 1 -2.7767 4.8555 8.1461 39 1 -3.1036 7.6656 5.7268 40 1 -1.4095 7.7617 6.2639 41 1 -1.7961 7.1184 4.6499 42 1 -2.4884 4.9691 4.1056 43 1 -1.8758 3.8836 1.9883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:58 Heat of formation + Delta-G solvation = -63.541702 kcal Electronic energy + Delta-G solvation = -22976.356603 eV Core-core repulsion = 19600.445268 eV Total energy + Delta-G solvation = -3375.911336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.48948 -39.14604 -37.20750 -34.99476 -33.50055 -32.45587 -31.33578 -30.75293 -29.60385 -27.63863 -26.87408 -23.93222 -23.37133 -22.52441 -21.23578 -20.26169 -19.29874 -18.58074 -17.56252 -16.19088 -15.74042 -15.73538 -15.22651 -14.94647 -14.56466 -14.42089 -14.06485 -13.77187 -13.47490 -13.25964 -12.92755 -12.74500 -12.63114 -12.50718 -12.28195 -12.21690 -11.78939 -11.46755 -11.39964 -11.30324 -10.99099 -10.92777 -10.77092 -10.64457 -10.31865 -10.18184 -9.65624 -9.06245 -9.05749 -9.02595 -8.48320 -8.21725 -7.77462 -6.12568 -4.19322 1.09988 1.36525 2.95654 3.25468 3.31986 3.33185 3.34939 4.11506 4.22946 4.39825 4.40960 4.54932 4.65365 4.81865 4.85663 5.15976 5.17170 5.20614 5.28657 5.36637 5.38021 5.40447 5.54840 5.63662 5.73085 5.81952 6.00676 6.23494 6.32093 6.38685 6.44382 6.51378 6.64682 6.66142 7.03820 7.20572 7.29355 7.36103 7.45377 7.63620 7.74368 7.88103 8.11060 8.69660 8.80938 9.15808 9.47285 10.95245 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028790 B = 0.003147 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.317368 B = 8896.280554 C = 9413.343581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.269 3.731 4 H 0.056 0.944 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.703 5.703 14 C 0.545 3.455 15 O -0.548 6.548 16 C -0.160 4.160 17 C -0.048 4.048 18 C -0.162 4.162 19 C 0.145 3.855 20 O -0.310 6.310 21 C 0.073 3.927 22 C -0.148 4.148 23 C -0.180 4.180 24 C -0.222 4.222 25 C -0.024 4.024 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.132 0.868 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.814 8.934 17.604 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.350 5.350 14 C 0.331 3.669 15 O -0.428 6.428 16 C -0.164 4.164 17 C -0.067 4.067 18 C -0.180 4.180 19 C 0.099 3.901 20 O -0.224 6.224 21 C 0.017 3.983 22 C -0.205 4.205 23 C -0.238 4.238 24 C -0.241 4.241 25 C -0.043 4.043 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.229 8.844 16.895 21.640 hybrid contribution 1.157 -0.082 0.105 1.165 sum -9.072 8.762 17.000 21.167 Atomic orbital electron populations 1.21845 0.98099 0.98125 1.01518 1.21856 0.92943 0.99815 1.01361 1.18815 0.94551 0.89103 0.80839 0.92640 1.21210 0.90666 1.43499 1.02006 0.92087 1.24890 0.98450 0.95071 0.95172 1.69971 1.35173 1.42998 1.03651 0.86481 0.85029 0.78406 0.77479 1.20573 1.21128 1.19815 1.46436 1.14182 1.55871 1.18544 1.18056 0.82979 0.79137 0.86746 1.90736 1.50767 1.60317 1.41029 1.20249 0.96013 1.04479 0.95627 1.21215 0.98842 0.95291 0.91357 1.20320 0.95058 1.03431 0.99218 1.19185 0.93731 0.92137 0.85019 1.86077 1.36531 1.67404 1.32365 1.22476 0.83926 0.93402 0.98465 1.21847 1.01480 1.03173 0.94011 1.22372 1.03007 0.96246 1.02161 1.21197 1.00579 1.07901 0.94408 1.21071 0.95091 0.91756 0.96380 0.93022 0.95818 0.93982 0.89785 0.94811 0.92591 0.78006 0.84714 0.84918 0.90600 0.91464 0.90519 0.91608 0.90994 0.91430 0.91608 0.85071 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.54 37.16 0.32 -2.80 16 2 C -0.12 -2.93 5.49 -26.73 -0.15 -3.07 16 3 C 0.27 6.78 2.11 -69.08 -0.15 6.64 16 4 H 0.06 1.63 7.56 -51.93 -0.39 1.24 16 5 C -0.54 -14.14 8.67 -34.44 -0.30 -14.44 16 6 H 0.06 1.54 7.73 -52.49 -0.41 1.13 16 7 C 0.07 1.83 5.21 -17.82 -0.09 1.73 16 8 N -0.88 -24.93 11.95 55.43 0.66 -24.27 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.78 4.98 -55.96 -0.28 -15.06 16 14 C 0.54 11.19 6.36 -12.44 -0.08 11.11 16 15 O -0.55 -13.00 13.50 5.29 0.07 -12.93 16 16 C -0.16 -2.64 5.87 -104.96 -0.62 -3.26 16 17 C -0.05 -0.67 9.53 -39.22 -0.37 -1.04 16 18 C -0.16 -2.02 9.97 -39.49 -0.39 -2.42 16 19 C 0.15 1.80 6.57 -39.02 -0.26 1.55 16 20 O -0.31 -3.48 9.79 -18.83 -0.18 -3.66 16 21 C 0.07 0.60 2.86 -26.73 -0.08 0.52 16 22 C -0.15 -0.92 9.56 37.16 0.36 -0.56 16 23 C -0.18 -1.32 9.26 37.16 0.34 -0.98 16 24 C -0.22 -2.73 8.33 -39.49 -0.33 -3.06 16 25 C -0.02 -0.35 9.58 -39.22 -0.38 -0.73 16 26 H 0.05 1.24 7.90 -51.93 -0.41 0.83 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.93 5.63 -51.93 -0.29 0.64 16 29 H 0.08 2.23 6.59 -51.93 -0.34 1.89 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.39 7.05 6.55 -40.82 -0.27 6.78 16 33 H 0.14 1.66 6.39 -52.49 -0.34 1.32 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.08 0.58 5.97 -51.93 -0.31 0.27 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.56 7.34 -51.93 -0.38 0.18 16 42 H 0.13 1.28 5.65 -52.49 -0.30 0.99 16 43 H 0.14 2.03 7.64 -52.49 -0.40 1.63 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -30.76 347.31 -8.04 -38.80 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.35 Total: 7.08 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.17 Total: -10.81 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.38 Total: -39.33 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.11 Total: -16.59 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.76 -8.04 -38.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.740 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds