Wall clock time and date at job start Tue Mar 31 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46947 * 2 1 4 4 H 1.09002 * 109.47130 * 305.90491 * 3 2 1 5 5 C 1.50700 * 109.47412 * 185.90650 * 3 2 1 6 6 H 1.07991 * 120.00214 * 244.80119 * 5 3 2 7 7 C 1.37879 * 120.00004 * 64.79223 * 5 3 2 8 8 N 1.31522 * 119.99757 * 5.96396 * 7 5 3 9 9 Si 1.86794 * 120.00186 * 185.95712 * 7 5 3 10 10 H 1.48500 * 109.47173 * 94.99700 * 9 7 5 11 11 H 1.48500 * 109.47505 * 214.99957 * 9 7 5 12 12 H 1.48500 * 109.47344 * 334.99889 * 9 7 5 13 13 N 1.46499 * 109.47702 * 65.90145 * 3 2 1 14 14 C 1.34775 * 120.00217 * 275.00578 * 13 3 2 15 15 O 1.21585 * 120.00116 * 359.71798 * 14 13 3 16 16 C 1.47604 * 119.99768 * 179.97438 * 14 13 3 17 17 C 1.39731 * 120.08807 * 359.45123 * 16 14 13 18 18 C 1.37711 * 119.90852 * 179.74211 * 17 16 14 19 19 C 1.38997 * 120.08814 * 0.50741 * 18 17 16 20 20 O 1.35710 * 119.91231 * 179.74286 * 19 18 17 21 21 C 1.42897 * 116.99663 * 177.35614 * 20 19 18 22 22 C 1.52999 * 109.46789 * 156.27347 * 21 20 19 23 23 C 1.52999 * 109.47363 * 276.27150 * 21 20 19 24 24 C 1.39002 * 120.17548 * 359.76540 * 19 18 17 25 25 C 1.37707 * 120.08819 * 359.97438 * 24 19 18 26 26 H 1.08999 * 109.47213 * 60.00515 * 1 2 3 27 27 H 1.09001 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47333 * 300.00273 * 1 2 3 29 29 H 1.09001 * 109.47333 * 239.99727 * 2 1 3 30 30 H 1.08999 * 109.47213 * 119.99485 * 2 1 3 31 31 H 0.96999 * 119.99942 * 179.97438 * 8 7 5 32 32 H 0.96999 * 119.99563 * 94.99955 * 13 3 2 33 33 H 1.07995 * 120.04318 * 359.97148 * 17 16 14 34 34 H 1.07993 * 119.95448 * 180.22919 * 18 17 16 35 35 H 1.08997 * 109.47828 * 36.27206 * 21 20 19 36 36 H 1.09004 * 109.47315 * 59.99700 * 22 21 20 37 37 H 1.08999 * 109.47486 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.47388 * 299.99891 * 22 21 20 39 39 H 1.08999 * 109.47256 * 180.02562 * 23 21 20 40 40 H 1.09004 * 109.46821 * 300.00349 * 23 21 20 41 41 H 1.09000 * 109.47526 * 60.00171 * 23 21 20 42 42 H 1.07995 * 119.95640 * 179.97438 * 24 19 18 43 43 H 1.08001 * 120.03904 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5929 1.9859 -0.8324 5 6 3.5399 1.4451 -0.1462 6 1 4.1600 1.8150 0.6568 7 6 4.1204 0.9751 -1.3052 8 7 3.3659 0.6345 -2.3272 9 14 5.9783 0.8224 -1.4238 10 1 6.3841 -0.5638 -1.0785 11 1 6.4133 1.1351 -2.8088 12 1 6.6147 1.7744 -0.4783 13 7 1.6711 2.0910 1.2608 14 6 0.4556 2.6572 1.3970 15 8 -0.3329 2.6343 0.4718 16 6 0.0839 3.3100 2.6675 17 6 0.9863 3.3321 3.7341 18 6 0.6377 3.9469 4.9160 19 6 -0.6140 4.5357 5.0524 20 8 -0.9559 5.1360 6.2205 21 6 -2.2346 5.7717 6.2732 22 6 -2.7009 5.8592 7.7278 23 6 -2.1283 7.1806 5.6861 24 6 -1.5167 4.5109 3.9957 25 6 -1.1736 3.9028 2.8087 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.7743 0.3042 -3.1427 32 1 2.3016 2.1128 1.9975 33 1 1.9573 2.8709 3.6304 34 1 1.3360 3.9676 5.7395 35 1 -2.9534 5.1907 5.6955 36 1 -1.9821 6.4403 8.3055 37 1 -3.6761 6.3445 7.7681 38 1 -2.7767 4.8555 8.1461 39 1 -3.1036 7.6656 5.7268 40 1 -1.4095 7.7617 6.2639 41 1 -1.7961 7.1184 4.6499 42 1 -2.4884 4.9691 4.1056 43 1 -1.8758 3.8836 1.9883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:58 Heat of formation + Delta-G solvation = -81.881190 kcal Electronic energy + Delta-G solvation = -22977.151863 eV Core-core repulsion = 19600.445268 eV Total energy + Delta-G solvation = -3376.706595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.52765 -40.58026 -38.36163 -36.85869 -34.38448 -34.17145 -33.06200 -31.91345 -30.85425 -28.83982 -28.12606 -25.36638 -24.70182 -23.93539 -22.24922 -21.80124 -20.96097 -19.64713 -19.00631 -17.71695 -17.36627 -16.74371 -16.46785 -16.24808 -16.16851 -15.85521 -15.15972 -14.93721 -14.61135 -14.54681 -14.39195 -13.89296 -13.71975 -13.51992 -13.40798 -13.24799 -13.13736 -13.06354 -12.89818 -12.71087 -12.62266 -12.18764 -12.17341 -12.07781 -11.76692 -11.60887 -11.45892 -11.06733 -10.73464 -10.53372 -10.09678 -9.69520 -9.19775 -8.17930 -6.32568 -0.05707 0.32489 1.45338 1.45579 1.56541 1.99813 2.15703 2.36713 2.64864 2.91041 3.13860 3.72874 3.77985 3.89851 3.96263 4.01712 4.16533 4.23963 4.35826 4.47146 4.54024 4.54636 4.71021 4.72677 4.82190 4.85545 4.90032 4.99372 5.06034 5.14912 5.21727 5.24237 5.26426 5.32364 5.39912 5.43708 5.54444 5.60680 5.64120 5.76636 5.93888 6.09198 6.39758 6.76139 6.99041 7.33722 7.56801 8.90474 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028790 B = 0.003147 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.317368 B = 8896.280554 C = 9413.343581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.114 4.114 3 C 0.276 3.724 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.262 1.262 13 N -0.700 5.700 14 C 0.543 3.457 15 O -0.589 6.589 16 C -0.187 4.187 17 C -0.043 4.043 18 C -0.162 4.162 19 C 0.154 3.846 20 O -0.315 6.315 21 C 0.062 3.938 22 C -0.145 4.145 23 C -0.179 4.179 24 C -0.215 4.215 25 C -0.031 4.031 26 H 0.025 0.975 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.265 0.735 32 H 0.401 0.599 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.157 0.843 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 9.694 20.563 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.153 4.153 3 C 0.173 3.827 4 H 0.020 0.980 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.186 1.186 13 N -0.349 5.349 14 C 0.332 3.668 15 O -0.472 6.472 16 C -0.191 4.191 17 C -0.061 4.061 18 C -0.180 4.180 19 C 0.108 3.892 20 O -0.229 6.229 21 C 0.007 3.993 22 C -0.202 4.202 23 C -0.236 4.236 24 C -0.234 4.234 25 C -0.050 4.050 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.237 0.763 33 H 0.166 0.834 34 H 0.174 0.826 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.174 0.826 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.968 9.620 19.908 24.254 hybrid contribution 0.962 -0.207 -0.701 1.208 sum -9.007 9.413 19.207 23.209 Atomic orbital electron populations 1.21683 0.96863 0.99306 1.00356 1.21710 0.93966 0.99007 1.00589 1.18408 0.93997 0.89193 0.81090 0.97972 1.21566 0.91326 1.43297 1.02444 0.90929 1.25786 1.03248 0.94643 0.94757 1.70123 1.37260 1.43925 1.04242 0.85376 0.79135 0.78759 0.77343 1.19776 1.21374 1.18593 1.46182 1.15045 1.56034 1.17645 1.18671 0.82043 0.78292 0.87811 1.90705 1.51806 1.61805 1.42924 1.19941 0.97752 1.06900 0.94493 1.21309 0.98798 0.95061 0.90970 1.20567 0.95631 1.02626 0.99204 1.19336 0.93563 0.91035 0.85308 1.86100 1.38215 1.67081 1.31501 1.22829 0.82724 0.93646 1.00103 1.21877 1.02548 1.03350 0.92440 1.22373 1.04243 0.95868 1.01123 1.21359 1.01705 1.07042 0.93250 1.21082 0.94464 0.92226 0.97234 0.95529 0.93295 0.93764 0.92444 0.93402 0.92623 0.76260 0.83425 0.82570 0.89890 0.91506 0.88304 0.91827 0.88809 0.91581 0.92925 0.82551 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.54 71.98 0.61 -5.13 16 2 C -0.11 -5.65 5.49 30.59 0.17 -5.48 16 3 C 0.28 14.46 2.11 44.24 0.09 14.55 16 4 H 0.00 0.15 7.56 -2.39 -0.02 0.13 16 5 C -0.55 -29.28 8.67 25.60 0.22 -29.06 16 6 H 0.07 3.62 7.73 -2.92 -0.02 3.59 16 7 C 0.02 0.86 5.21 84.65 0.44 1.30 16 8 N -0.92 -53.53 11.95 21.45 0.26 -53.27 16 9 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 13 N -0.70 -30.03 4.98 -449.21 -2.24 -32.26 16 14 C 0.54 22.97 6.36 86.72 0.55 23.52 16 15 O -0.59 -29.38 13.50 -3.98 -0.05 -29.43 16 16 C -0.19 -6.16 5.87 -20.08 -0.12 -6.28 16 17 C -0.04 -1.12 9.53 22.51 0.21 -0.90 16 18 C -0.16 -3.65 9.97 22.33 0.22 -3.42 16 19 C 0.15 3.45 6.57 22.64 0.15 3.60 16 20 O -0.32 -6.18 9.79 -90.31 -0.88 -7.06 16 21 C 0.06 0.84 2.86 30.59 0.09 0.92 16 22 C -0.15 -1.36 9.56 71.98 0.69 -0.67 16 23 C -0.18 -2.14 9.26 71.98 0.67 -1.47 16 24 C -0.22 -4.90 8.33 22.33 0.19 -4.71 16 25 C -0.03 -0.91 9.58 22.51 0.22 -0.69 16 26 H 0.03 1.31 7.90 -2.39 -0.02 1.29 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.04 1.99 5.63 -2.39 -0.01 1.98 16 29 H 0.06 3.16 6.59 -2.39 -0.02 3.14 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.40 14.52 6.55 -92.71 -0.61 13.91 16 33 H 0.15 3.37 6.39 -2.91 -0.02 3.35 16 34 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.08 1.01 5.97 -2.39 -0.01 0.99 16 36 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.05 0.78 7.34 -2.39 -0.02 0.76 16 42 H 0.16 2.67 5.65 -2.91 -0.02 2.66 16 43 H 0.13 3.91 7.64 -2.91 -0.02 3.89 16 Total: -1.00 -68.75 347.31 3.92 -64.83 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.41 Total: 26.75 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 4.40 Total: -13.92 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -1.98 Total: -85.53 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.94 Total: -36.50 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -68.75 3.92 -64.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.048 kcal (2) G-P(sol) polarization free energy of solvation -68.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds