Wall clock time and date at job start Tue Mar 31 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47238 * 2 1 4 4 H 1.08996 * 109.46804 * 56.86415 * 3 2 1 5 5 C 1.50697 * 109.47493 * 176.86477 * 3 2 1 6 6 H 1.07999 * 119.99890 * 87.39546 * 5 3 2 7 7 C 1.37881 * 120.00103 * 267.39563 * 5 3 2 8 8 N 1.31505 * 120.00151 * 181.91772 * 7 5 3 9 9 Si 1.86800 * 119.99848 * 1.91756 * 7 5 3 10 10 H 1.48502 * 109.46820 * 266.75136 * 9 7 5 11 11 H 1.48507 * 109.47241 * 26.74823 * 9 7 5 12 12 H 1.48496 * 109.47322 * 146.75060 * 9 7 5 13 13 N 1.46502 * 109.46922 * 296.86659 * 3 2 1 14 14 C 1.34773 * 120.00224 * 84.99447 * 13 3 2 15 15 O 1.21583 * 120.00051 * 0.02562 * 14 13 3 16 16 C 1.47600 * 120.00250 * 179.97438 * 14 13 3 17 17 C 1.39736 * 120.08821 * 359.73186 * 16 14 13 18 18 C 1.37704 * 119.91218 * 179.74013 * 17 16 14 19 19 C 1.38995 * 120.08739 * 0.50933 * 18 17 16 20 20 O 1.35707 * 119.91323 * 179.74198 * 19 18 17 21 21 C 1.42900 * 117.00246 * 175.12643 * 20 19 18 22 22 C 1.52997 * 109.46930 * 85.44063 * 21 20 19 23 23 C 1.52999 * 109.46947 * 205.44422 * 21 20 19 24 24 C 1.38998 * 120.17868 * 359.76525 * 19 18 17 25 25 C 1.37709 * 120.08460 * 359.97438 * 24 19 18 26 26 H 1.09002 * 109.47334 * 60.00204 * 1 2 3 27 27 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46970 * 299.99880 * 1 2 3 29 29 H 1.08995 * 109.47432 * 239.99909 * 2 1 3 30 30 H 1.09002 * 109.47334 * 119.99796 * 2 1 3 31 31 H 0.97001 * 119.99941 * 180.02562 * 8 7 5 32 32 H 0.96995 * 119.99996 * 264.99991 * 13 3 2 33 33 H 1.07999 * 120.04319 * 359.97204 * 17 16 14 34 34 H 1.08002 * 119.95571 * 180.25002 * 18 17 16 35 35 H 1.08995 * 109.47067 * 325.43789 * 21 20 19 36 36 H 1.09004 * 109.46791 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.47413 * 300.00001 * 22 21 20 38 38 H 1.09007 * 109.47054 * 60.00528 * 22 21 20 39 39 H 1.08991 * 109.47680 * 59.99767 * 23 21 20 40 40 H 1.09008 * 109.47080 * 180.02562 * 23 21 20 41 41 H 1.09006 * 109.47087 * 299.99226 * 23 21 20 42 42 H 1.07997 * 119.95930 * 179.97438 * 24 19 18 43 43 H 1.08003 * 120.04064 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6315 1.9723 0.8605 5 6 3.5449 1.4433 0.0777 6 1 4.1324 1.3841 -0.8266 7 6 4.1720 1.5197 1.3033 8 7 5.4848 1.5584 1.3690 9 14 3.1565 1.5681 2.8705 10 1 2.9163 2.9805 3.2611 11 1 1.8556 0.8905 2.6386 12 1 3.8904 0.8718 3.9576 13 7 1.6142 2.1110 -1.2322 14 6 0.3941 2.6788 -1.3038 15 8 -0.3532 2.6367 -0.3457 16 6 -0.0346 3.3528 -2.5450 17 6 0.8253 3.4081 -3.6451 18 6 0.4195 4.0331 -4.8031 19 6 -0.8394 4.6177 -4.8750 20 8 -1.2336 5.2373 -6.0162 21 6 -2.5769 5.7227 -6.0602 22 6 -2.6355 7.1184 -5.4361 23 6 -3.0459 5.7943 -7.5148 24 6 -1.6956 4.5699 -3.7811 25 6 -1.2993 3.9421 -2.6213 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9259 1.6117 2.2313 32 1 2.2105 2.1448 -1.9964 33 1 1.8053 2.9579 -3.5884 34 1 1.0821 4.0727 -5.6551 35 1 -3.2256 5.0476 -5.5022 36 1 -3.6601 7.4888 -5.4700 37 1 -2.3013 7.0673 -4.3998 38 1 -1.9867 7.7935 -5.9943 39 1 -3.0042 4.8001 -7.9594 40 1 -4.0705 6.1651 -7.5484 41 1 -2.3972 6.4695 -8.0729 42 1 -2.6729 5.0257 -3.8408 43 1 -1.9650 3.9057 -1.7716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:01 Heat of formation + Delta-G solvation = -62.607338 kcal Electronic energy + Delta-G solvation = -23063.139479 eV Core-core repulsion = 19687.268661 eV Total energy + Delta-G solvation = -3375.870819 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52885 -39.27353 -37.29098 -35.14191 -33.53309 -32.43441 -31.73763 -30.83519 -29.69954 -27.69785 -27.36751 -23.93835 -23.25967 -22.50779 -21.30128 -20.37060 -19.49138 -18.58097 -17.70516 -16.37413 -16.10397 -15.73267 -15.29643 -15.01525 -14.77038 -14.31787 -14.07711 -13.85050 -13.49641 -13.35472 -13.01003 -12.79956 -12.71045 -12.59611 -12.38397 -12.32003 -11.90928 -11.81996 -11.76260 -11.41766 -10.97639 -10.93609 -10.74287 -10.66878 -10.63045 -9.94488 -9.83250 -9.19849 -9.13963 -9.08881 -8.73231 -8.28021 -7.93185 -6.22367 -4.25819 1.05036 1.33191 2.93062 3.24116 3.27778 3.35615 3.43501 4.01395 4.14154 4.33986 4.39264 4.52611 4.65465 4.78708 4.80982 5.11854 5.13565 5.15373 5.26040 5.34109 5.35039 5.38361 5.49753 5.60566 5.71343 5.79974 5.97395 6.08049 6.10212 6.18944 6.24576 6.31126 6.46203 6.62085 6.68714 6.80767 6.99194 7.03283 7.26157 7.31324 7.39464 7.57098 8.15726 8.58601 8.78012 9.00277 9.39928 10.89354 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029663 B = 0.003284 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.722865 B = 8523.239609 C = 8758.210944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.238 3.762 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.871 3.129 10 H -0.275 1.275 11 H -0.255 1.255 12 H -0.285 1.285 13 N -0.697 5.697 14 C 0.546 3.454 15 O -0.554 6.554 16 C -0.162 4.162 17 C -0.046 4.046 18 C -0.161 4.161 19 C 0.146 3.854 20 O -0.309 6.309 21 C 0.074 3.926 22 C -0.181 4.181 23 C -0.149 4.149 24 C -0.222 4.222 25 C -0.024 4.024 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.267 0.733 32 H 0.392 0.608 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.132 0.868 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.528 7.390 -15.408 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C 0.136 3.864 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.697 3.303 10 H -0.201 1.201 11 H -0.179 1.179 12 H -0.211 1.211 13 N -0.345 5.345 14 C 0.332 3.668 15 O -0.434 6.434 16 C -0.166 4.166 17 C -0.065 4.065 18 C -0.180 4.180 19 C 0.101 3.899 20 O -0.223 6.223 21 C 0.018 3.982 22 C -0.239 4.239 23 C -0.206 4.206 24 C -0.241 4.241 25 C -0.043 4.043 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.226 0.774 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.149 0.851 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.748 7.386 -14.754 22.809 hybrid contribution -0.197 0.118 0.632 0.673 sum -15.945 7.504 -14.122 22.583 Atomic orbital electron populations 1.21899 0.97439 0.98798 1.02018 1.22103 0.93718 0.99526 1.01210 1.19154 0.95032 0.88784 0.83476 0.93098 1.21012 0.88416 1.52408 0.95079 0.90351 1.24912 0.94818 0.93534 0.99042 1.69881 1.08069 1.48836 1.25798 0.86939 0.81262 0.79110 0.82977 1.20064 1.17872 1.21114 1.46473 1.14831 1.55062 1.18136 1.18131 0.82643 0.79048 0.86946 1.90721 1.53726 1.60944 1.38039 1.20181 0.96160 1.04694 0.95526 1.21236 0.98911 0.95151 0.91225 1.20339 0.95008 1.02976 0.99631 1.19203 0.93770 0.91641 0.85324 1.86076 1.30914 1.70450 1.34882 1.22473 0.81889 0.95415 0.98386 1.22393 1.02921 0.96549 1.02006 1.21858 1.01395 1.03290 0.94027 1.21212 1.01080 1.07677 0.94127 1.21061 0.94656 0.91751 0.96813 0.93292 0.95154 0.92966 0.92943 0.92134 0.92283 0.77390 0.84567 0.84806 0.90655 0.90989 0.91571 0.91371 0.91597 0.90525 0.91435 0.85056 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.48 37.15 0.31 -2.60 16 2 C -0.13 -2.76 5.31 -26.73 -0.14 -2.90 16 3 C 0.24 5.64 1.80 -69.08 -0.12 5.51 16 4 H 0.05 1.32 5.04 -51.93 -0.26 1.06 16 5 C -0.53 -14.21 9.05 -34.44 -0.31 -14.53 16 6 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 9 Si 0.87 21.47 26.50 -169.99 -4.51 16.96 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.25 -6.13 6.13 56.52 0.35 -5.78 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.70 -14.16 4.95 -55.95 -0.28 -14.44 16 14 C 0.55 10.76 6.25 -12.44 -0.08 10.69 16 15 O -0.55 -12.45 13.47 5.29 0.07 -12.38 16 16 C -0.16 -2.59 5.87 -104.96 -0.62 -3.21 16 17 C -0.05 -0.63 9.53 -39.22 -0.37 -1.01 16 18 C -0.16 -1.99 9.97 -39.50 -0.39 -2.38 16 19 C 0.15 1.79 6.61 -39.02 -0.26 1.53 16 20 O -0.31 -3.42 9.79 -18.82 -0.18 -3.61 16 21 C 0.07 0.60 2.84 -26.73 -0.08 0.52 16 22 C -0.18 -1.29 9.19 37.16 0.34 -0.95 16 23 C -0.15 -0.90 9.56 37.16 0.36 -0.55 16 24 C -0.22 -2.66 8.25 -39.49 -0.33 -2.99 16 25 C -0.02 -0.34 9.58 -39.22 -0.38 -0.72 16 26 H 0.05 0.98 5.69 -51.93 -0.30 0.69 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 1.12 7.73 -51.93 -0.40 0.72 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.36 7.17 -51.93 -0.37 0.98 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.39 7.03 6.61 -40.82 -0.27 6.76 16 33 H 0.14 1.66 6.40 -52.49 -0.34 1.33 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.08 0.57 6.24 -51.93 -0.32 0.24 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.54 7.00 -51.93 -0.36 0.18 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.13 1.25 5.44 -52.49 -0.29 0.96 16 43 H 0.14 1.94 7.64 -52.48 -0.40 1.54 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -31.45 343.16 -7.42 -38.87 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.31 Total: 6.25 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -2.16 Total: -11.40 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.50 Total: -39.87 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.11 Total: -15.99 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.51 Total: 16.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.45 -7.42 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.738 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds