Wall clock time and date at job start Tue Mar 31 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47238 * 2 1 4 4 H 1.08996 * 109.46804 * 56.86415 * 3 2 1 5 5 C 1.50697 * 109.47493 * 176.86477 * 3 2 1 6 6 H 1.07999 * 119.99890 * 87.39546 * 5 3 2 7 7 C 1.37881 * 120.00103 * 267.39563 * 5 3 2 8 8 N 1.31505 * 120.00151 * 181.91772 * 7 5 3 9 9 Si 1.86800 * 119.99848 * 1.91756 * 7 5 3 10 10 H 1.48502 * 109.46820 * 266.75136 * 9 7 5 11 11 H 1.48507 * 109.47241 * 26.74823 * 9 7 5 12 12 H 1.48496 * 109.47322 * 146.75060 * 9 7 5 13 13 N 1.46502 * 109.46922 * 296.86659 * 3 2 1 14 14 C 1.34773 * 120.00224 * 84.99447 * 13 3 2 15 15 O 1.21583 * 120.00051 * 0.02562 * 14 13 3 16 16 C 1.47600 * 120.00250 * 179.97438 * 14 13 3 17 17 C 1.39736 * 120.08821 * 359.73186 * 16 14 13 18 18 C 1.37704 * 119.91218 * 179.74013 * 17 16 14 19 19 C 1.38995 * 120.08739 * 0.50933 * 18 17 16 20 20 O 1.35707 * 119.91323 * 179.74198 * 19 18 17 21 21 C 1.42900 * 117.00246 * 175.12643 * 20 19 18 22 22 C 1.52997 * 109.46930 * 85.44063 * 21 20 19 23 23 C 1.52999 * 109.46947 * 205.44422 * 21 20 19 24 24 C 1.38998 * 120.17868 * 359.76525 * 19 18 17 25 25 C 1.37709 * 120.08460 * 359.97438 * 24 19 18 26 26 H 1.09002 * 109.47334 * 60.00204 * 1 2 3 27 27 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46970 * 299.99880 * 1 2 3 29 29 H 1.08995 * 109.47432 * 239.99909 * 2 1 3 30 30 H 1.09002 * 109.47334 * 119.99796 * 2 1 3 31 31 H 0.97001 * 119.99941 * 180.02562 * 8 7 5 32 32 H 0.96995 * 119.99996 * 264.99991 * 13 3 2 33 33 H 1.07999 * 120.04319 * 359.97204 * 17 16 14 34 34 H 1.08002 * 119.95571 * 180.25002 * 18 17 16 35 35 H 1.08995 * 109.47067 * 325.43789 * 21 20 19 36 36 H 1.09004 * 109.46791 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.47413 * 300.00001 * 22 21 20 38 38 H 1.09007 * 109.47054 * 60.00528 * 22 21 20 39 39 H 1.08991 * 109.47680 * 59.99767 * 23 21 20 40 40 H 1.09008 * 109.47080 * 180.02562 * 23 21 20 41 41 H 1.09006 * 109.47087 * 299.99226 * 23 21 20 42 42 H 1.07997 * 119.95930 * 179.97438 * 24 19 18 43 43 H 1.08003 * 120.04064 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6315 1.9723 0.8605 5 6 3.5449 1.4433 0.0777 6 1 4.1324 1.3841 -0.8266 7 6 4.1720 1.5197 1.3033 8 7 5.4848 1.5584 1.3690 9 14 3.1565 1.5681 2.8705 10 1 2.9163 2.9805 3.2611 11 1 1.8556 0.8905 2.6386 12 1 3.8904 0.8718 3.9576 13 7 1.6142 2.1110 -1.2322 14 6 0.3941 2.6788 -1.3038 15 8 -0.3532 2.6367 -0.3457 16 6 -0.0346 3.3528 -2.5450 17 6 0.8253 3.4081 -3.6451 18 6 0.4195 4.0331 -4.8031 19 6 -0.8394 4.6177 -4.8750 20 8 -1.2336 5.2373 -6.0162 21 6 -2.5769 5.7227 -6.0602 22 6 -2.6355 7.1184 -5.4361 23 6 -3.0459 5.7943 -7.5148 24 6 -1.6956 4.5699 -3.7811 25 6 -1.2993 3.9421 -2.6213 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9259 1.6117 2.2313 32 1 2.2105 2.1448 -1.9964 33 1 1.8053 2.9579 -3.5884 34 1 1.0821 4.0727 -5.6551 35 1 -3.2256 5.0476 -5.5022 36 1 -3.6601 7.4888 -5.4700 37 1 -2.3013 7.0673 -4.3998 38 1 -1.9867 7.7935 -5.9943 39 1 -3.0042 4.8001 -7.9594 40 1 -4.0705 6.1651 -7.5484 41 1 -2.3972 6.4695 -8.0729 42 1 -2.6729 5.0257 -3.8408 43 1 -1.9650 3.9057 -1.7716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:01 Heat of formation + Delta-G solvation = -82.099420 kcal Electronic energy + Delta-G solvation = -23063.984720 eV Core-core repulsion = 19687.268661 eV Total energy + Delta-G solvation = -3376.716059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55125 -40.64225 -38.39565 -36.90309 -34.43780 -34.21864 -33.33946 -31.92040 -30.89107 -29.29880 -28.14165 -25.20343 -24.60129 -23.93212 -22.26237 -21.78812 -21.08776 -19.67634 -19.19073 -18.05464 -17.49221 -16.75054 -16.42115 -16.30779 -16.18345 -15.84850 -15.25721 -14.89093 -14.80500 -14.58207 -14.43695 -13.97380 -13.86822 -13.72661 -13.57981 -13.45014 -13.14152 -13.07256 -12.94240 -12.73468 -12.53871 -12.35427 -12.15223 -11.84084 -11.74013 -11.65421 -11.53998 -11.17561 -10.88130 -10.76096 -10.10115 -9.75978 -9.21619 -8.38453 -6.44178 -0.07386 0.31895 1.28987 1.34245 1.46328 1.95992 2.15367 2.28005 2.46557 2.88924 3.04983 3.72529 3.79687 3.88532 3.92841 4.00844 4.15985 4.22803 4.31644 4.36041 4.41482 4.51990 4.56330 4.70860 4.80201 4.82250 4.87159 4.89908 4.98746 5.10517 5.14394 5.20725 5.25947 5.26028 5.27685 5.32288 5.39600 5.44408 5.55998 5.63489 5.76899 6.14577 6.39465 6.60372 6.91369 7.21541 7.46230 8.76543 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029663 B = 0.003284 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.722865 B = 8523.239609 C = 8758.210944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 C 0.243 3.757 4 H 0.029 0.971 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.923 3.077 10 H -0.278 1.278 11 H -0.248 1.248 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.547 3.453 15 O -0.586 6.586 16 C -0.188 4.188 17 C -0.044 4.044 18 C -0.164 4.164 19 C 0.154 3.846 20 O -0.316 6.316 21 C 0.063 3.937 22 C -0.180 4.180 23 C -0.146 4.146 24 C -0.215 4.215 25 C -0.029 4.029 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.270 0.730 32 H 0.402 0.598 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.158 0.842 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.644 7.947 -17.022 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C 0.139 3.861 4 H 0.047 0.953 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.168 4.168 8 N -0.570 5.570 9 Si 0.747 3.253 10 H -0.204 1.204 11 H -0.171 1.171 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.336 3.664 15 O -0.469 6.469 16 C -0.192 4.192 17 C -0.062 4.062 18 C -0.182 4.182 19 C 0.108 3.892 20 O -0.230 6.230 21 C 0.008 3.992 22 C -0.237 4.237 23 C -0.203 4.203 24 C -0.233 4.233 25 C -0.048 4.048 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.238 0.762 33 H 0.163 0.837 34 H 0.172 0.828 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.084 0.916 42 H 0.175 0.825 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.876 7.948 -16.405 25.531 hybrid contribution 0.394 0.041 0.937 1.017 sum -17.482 7.988 -15.468 24.671 Atomic orbital electron populations 1.21762 0.95894 1.00274 1.01082 1.22016 0.95009 0.97978 1.01346 1.18899 0.92896 0.90064 0.84230 0.95278 1.21214 0.90042 1.51055 0.94172 0.92526 1.25586 0.95581 0.93699 1.01904 1.69978 1.09493 1.50882 1.26618 0.86108 0.80278 0.78896 0.79979 1.20431 1.17124 1.20171 1.46232 1.15679 1.55420 1.17444 1.18617 0.81716 0.78250 0.87851 1.90692 1.54468 1.62143 1.39593 1.19921 0.97698 1.06901 0.94652 1.21309 0.98921 0.95067 0.90947 1.20562 0.95562 1.02398 0.99672 1.19347 0.93599 0.90608 0.85676 1.86096 1.32808 1.69965 1.34134 1.22823 0.80484 0.95897 0.99975 1.22395 1.04277 0.95989 1.01040 1.21888 1.02591 1.03289 0.92533 1.21387 1.02111 1.06799 0.93041 1.21099 0.94033 0.92015 0.97619 0.93512 0.92379 0.94612 0.91919 0.92877 0.92078 0.76166 0.83708 0.82827 0.89869 0.88761 0.92705 0.91667 0.91849 0.88284 0.91576 0.82506 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.48 71.98 0.61 -4.60 16 2 C -0.12 -5.35 5.31 30.59 0.16 -5.19 16 3 C 0.24 11.57 1.80 44.25 0.08 11.65 16 4 H 0.03 1.53 5.04 -2.39 -0.01 1.52 16 5 C -0.53 -28.65 9.05 25.60 0.23 -28.41 16 6 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 7 C 0.03 1.85 5.47 84.66 0.46 2.31 16 8 N -0.93 -55.89 13.96 21.45 0.30 -55.60 16 9 Si 0.92 44.76 26.50 68.60 1.82 46.58 16 10 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 11 H -0.25 -11.62 6.13 99.48 0.61 -11.01 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 N -0.70 -28.50 4.95 -449.21 -2.22 -30.73 16 14 C 0.55 21.60 6.25 86.71 0.54 22.14 16 15 O -0.59 -26.59 13.47 -3.98 -0.05 -26.64 16 16 C -0.19 -5.92 5.87 -20.08 -0.12 -6.04 16 17 C -0.04 -1.14 9.53 22.51 0.21 -0.92 16 18 C -0.16 -3.70 9.97 22.33 0.22 -3.48 16 19 C 0.15 3.41 6.61 22.63 0.15 3.56 16 20 O -0.32 -6.17 9.79 -90.27 -0.88 -7.05 16 21 C 0.06 0.83 2.84 30.59 0.09 0.92 16 22 C -0.18 -2.06 9.19 71.98 0.66 -1.40 16 23 C -0.15 -1.35 9.56 71.98 0.69 -0.66 16 24 C -0.22 -4.69 8.25 22.33 0.18 -4.50 16 25 C -0.03 -0.79 9.58 22.51 0.22 -0.57 16 26 H 0.05 1.84 5.69 -2.39 -0.01 1.82 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.03 1.50 7.73 -2.38 -0.02 1.48 16 29 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.05 2.34 7.17 -2.39 -0.02 2.32 16 31 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.40 14.49 6.61 -92.71 -0.61 13.88 16 33 H 0.15 3.40 6.40 -2.91 -0.02 3.38 16 34 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.08 0.97 6.24 -2.39 -0.01 0.96 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 0.76 7.00 -2.39 -0.02 0.75 16 38 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.16 2.53 5.44 -2.91 -0.02 2.52 16 43 H 0.13 3.71 7.64 -2.91 -0.02 3.69 16 Total: -1.00 -68.01 343.16 3.66 -64.35 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.31 Total: 24.29 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.39 Total: -15.20 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -1.92 Total: -86.32 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.94 Total: -33.69 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.82 Total: 46.58 kcal Total: -68.01 3.66 -64.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.750 kcal (2) G-P(sol) polarization free energy of solvation -68.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds