Wall clock time and date at job start Tue Mar 31 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47265 * 2 1 4 4 H 1.08999 * 109.46744 * 304.89768 * 3 2 1 5 5 C 1.50705 * 109.47083 * 184.90190 * 3 2 1 6 6 H 1.07992 * 119.99792 * 245.45341 * 5 3 2 7 7 C 1.37872 * 119.99984 * 65.45248 * 5 3 2 8 8 N 1.31520 * 120.00158 * 9.46863 * 7 5 3 9 9 Si 1.86793 * 120.00245 * 189.47081 * 7 5 3 10 10 H 1.48505 * 109.47527 * 84.99361 * 9 7 5 11 11 H 1.48500 * 109.47575 * 204.99733 * 9 7 5 12 12 H 1.48506 * 109.46824 * 324.99253 * 9 7 5 13 13 N 1.46502 * 109.47088 * 64.90160 * 3 2 1 14 14 C 1.34769 * 120.00073 * 275.00102 * 13 3 2 15 15 O 1.21284 * 120.00134 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00090 * 180.02562 * 14 13 3 17 17 C 1.53008 * 109.47124 * 180.02562 * 16 14 13 18 18 O 1.42900 * 109.47103 * 179.97438 * 17 16 14 19 19 C 1.35900 * 117.00049 * 179.97438 * 18 17 16 20 20 C 1.38756 * 120.05514 * 359.97438 * 19 18 17 21 21 C 1.38118 * 119.94346 * 180.02562 * 20 19 18 22 22 C 1.38285 * 120.05621 * 359.97438 * 21 20 19 23 23 C 1.38246 * 120.11349 * 0.02562 * 22 21 20 24 24 C 1.38166 * 120.05670 * 359.97438 * 23 22 21 25 25 C 1.50701 * 120.03336 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.47528 * 59.99789 * 1 2 3 27 27 H 1.09001 * 109.47461 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47124 * 299.99654 * 1 2 3 29 29 H 1.09008 * 109.46850 * 239.99881 * 2 1 3 30 30 H 1.09002 * 109.47218 * 120.00609 * 2 1 3 31 31 H 0.97002 * 120.00148 * 179.97438 * 8 7 5 32 32 H 0.96995 * 119.99520 * 94.99543 * 13 3 2 33 33 H 1.08994 * 109.47183 * 59.99944 * 16 14 13 34 34 H 1.09000 * 109.46783 * 299.99582 * 16 14 13 35 35 H 1.08994 * 109.47155 * 59.99905 * 17 16 14 36 36 H 1.09000 * 109.46931 * 299.99469 * 17 16 14 37 37 H 1.08002 * 120.02609 * 359.97438 * 20 19 18 38 38 H 1.07995 * 119.96963 * 179.72118 * 21 20 19 39 39 H 1.08004 * 119.94821 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.97814 * 179.97438 * 23 22 21 41 41 H 1.09006 * 109.46640 * 270.02160 * 25 24 23 42 42 H 1.08998 * 109.47037 * 30.01242 * 25 24 23 43 43 H 1.09000 * 109.47419 * 150.01781 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 -0.8429 5 6 3.5422 1.4442 -0.1214 6 1 4.1493 1.8089 0.6938 7 6 4.1412 0.9800 -1.2732 8 7 3.4096 0.7114 -2.3326 9 14 5.9918 0.7326 -1.3291 10 1 6.3289 -0.6069 -0.7837 11 1 6.4618 0.8274 -2.7345 12 1 6.6562 1.7808 -0.5133 13 7 1.6504 2.0982 1.2508 14 6 0.4330 2.6651 1.3637 15 8 -0.3403 2.6321 0.4299 16 6 0.0325 3.3401 2.6501 17 6 -1.3867 3.8957 2.5142 18 8 -1.7667 4.5353 3.7343 19 6 -3.0079 5.0866 3.7813 20 6 -3.8429 5.0140 2.6755 21 6 -5.1038 5.5756 2.7256 22 6 -5.5344 6.2094 3.8768 23 6 -4.7044 6.2831 4.9799 24 6 -3.4422 5.7229 4.9349 25 6 -2.5377 5.8040 6.1375 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8311 0.3852 -3.1431 32 1 2.2687 2.1242 1.9977 33 1 0.7235 4.1557 2.8630 34 1 0.0625 2.6165 3.4647 35 1 -2.0774 3.0799 2.3016 36 1 -1.4171 4.6193 1.6996 37 1 -3.5069 4.5195 1.7761 38 1 -5.7523 5.5233 1.8637 39 1 -6.5206 6.6483 3.9139 40 1 -5.0428 6.7789 5.8777 41 1 -1.9379 6.7124 6.0803 42 1 -3.1409 5.8235 7.0452 43 1 -1.8801 4.9349 6.1569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700958087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:50 Heat of formation + Delta-G solvation = -71.637482 kcal Electronic energy + Delta-G solvation = -22687.421058 eV Core-core repulsion = 19311.158663 eV Total energy + Delta-G solvation = -3376.262395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.33502 -39.13066 -37.50981 -35.15209 -33.02981 -32.46383 -31.85694 -30.79165 -29.79238 -27.13118 -26.82673 -24.65271 -22.97435 -21.83769 -21.56394 -20.14357 -19.38677 -18.25757 -16.92101 -16.33641 -16.19308 -15.79716 -15.39906 -15.25516 -14.77443 -14.52008 -14.15277 -13.73933 -13.54490 -13.22796 -13.08480 -12.79050 -12.65299 -12.41634 -12.09080 -11.73250 -11.70349 -11.47100 -11.43399 -11.35688 -11.03983 -10.83050 -10.80639 -10.71270 -10.38434 -10.23637 -9.73884 -9.14847 -9.07202 -8.95570 -8.51282 -8.20340 -7.90466 -6.17801 -4.23398 1.19322 1.33402 3.00669 3.23038 3.29583 3.30680 3.32585 3.63630 4.18987 4.40294 4.65376 4.70042 4.87095 5.00087 5.04773 5.13259 5.15451 5.19503 5.37325 5.45051 5.53147 5.57282 5.69540 5.73154 5.83091 5.84581 6.07280 6.25218 6.30648 6.33184 6.34439 6.40637 6.55263 6.69498 6.94422 7.11975 7.27428 7.35583 7.36422 7.56657 7.67199 7.79823 8.03844 8.60717 8.75184 9.06370 9.42606 10.90397 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032288 B = 0.002763 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.984880 B =10133.150162 C =10574.520002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.057 0.943 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.506 3.494 15 O -0.551 6.551 16 C -0.142 4.142 17 C 0.077 3.923 18 O -0.316 6.316 19 C 0.135 3.865 20 C -0.204 4.204 21 C -0.086 4.086 22 C -0.160 4.160 23 C -0.087 4.087 24 C -0.122 4.122 25 C -0.104 4.104 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.390 0.610 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.715 8.350 14.176 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.166 3.834 4 H 0.074 0.926 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.290 3.710 15 O -0.431 6.431 16 C -0.182 4.182 17 C 0.002 3.998 18 O -0.229 6.229 19 C 0.089 3.911 20 C -0.222 4.222 21 C -0.104 4.104 22 C -0.178 4.178 23 C -0.105 4.105 24 C -0.123 4.123 25 C -0.161 4.161 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.151 0.849 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.064 8.227 13.420 20.455 hybrid contribution 1.218 -0.270 -0.043 1.248 sum -11.846 7.956 13.376 19.559 Atomic orbital electron populations 1.21842 0.98051 0.98195 1.01447 1.21856 0.92959 0.99879 1.01228 1.18817 0.94396 0.88910 0.81244 0.92556 1.21174 0.90549 1.44114 1.01838 0.92057 1.24888 0.98509 0.95114 0.94973 1.69984 1.35794 1.43704 1.02149 0.86527 0.84945 0.78738 0.77285 1.20401 1.21161 1.19899 1.46458 1.14465 1.55671 1.18646 1.19999 0.83046 0.79482 0.88448 1.90688 1.51555 1.60257 1.40592 1.21527 0.96222 1.02028 0.98449 1.22479 0.95833 0.97014 0.84498 1.85963 1.29241 1.69384 1.38358 1.18830 0.84563 0.93775 0.93902 1.21408 0.95935 1.05947 0.98959 1.20951 0.95176 0.96327 0.97947 1.21015 1.00253 1.02724 0.93819 1.20850 0.92654 0.98420 0.98597 1.19284 0.96224 1.02053 0.94743 1.20600 0.98423 1.02827 0.94246 0.92950 0.95750 0.94107 0.90210 0.94672 0.92519 0.77804 0.88361 0.88489 0.91129 0.91048 0.84940 0.85886 0.86125 0.85649 0.91480 0.91901 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.12 -2.82 5.50 -26.73 -0.15 -2.96 16 3 C 0.27 6.55 2.11 -69.08 -0.15 6.40 16 4 H 0.06 1.62 7.52 -51.93 -0.39 1.23 16 5 C -0.54 -13.95 8.66 -34.44 -0.30 -14.25 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.84 5.16 -17.82 -0.09 1.75 16 8 N -0.88 -24.62 12.16 55.43 0.67 -23.95 16 9 Si 0.90 20.37 29.55 -169.99 -5.02 15.35 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.70 -13.89 5.02 -54.93 -0.28 -14.16 16 14 C 0.51 9.35 6.39 -10.99 -0.07 9.28 16 15 O -0.55 -12.06 13.12 5.55 0.07 -11.99 16 16 C -0.14 -1.93 6.07 -27.88 -0.17 -2.10 16 17 C 0.08 1.06 4.03 37.16 0.15 1.21 16 18 O -0.32 -4.23 9.18 -19.42 -0.18 -4.41 16 19 C 0.14 1.74 6.66 -39.21 -0.26 1.48 16 20 C -0.20 -2.51 9.04 -39.43 -0.36 -2.86 16 21 C -0.09 -0.91 10.04 -39.61 -0.40 -1.31 16 22 C -0.16 -1.53 10.04 -39.56 -0.40 -1.93 16 23 C -0.09 -0.85 9.70 -39.61 -0.38 -1.23 16 24 C -0.12 -1.38 5.89 -104.47 -0.62 -2.00 16 25 C -0.10 -0.97 9.79 36.01 0.35 -0.62 16 26 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 29 H 0.08 2.07 6.80 -51.92 -0.35 1.71 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.39 6.60 8.53 -40.82 -0.35 6.26 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.00 7.62 -51.93 -0.40 0.60 16 36 H 0.07 1.02 7.62 -51.93 -0.40 0.63 16 37 H 0.13 1.62 6.30 -52.49 -0.33 1.29 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 43 H 0.07 0.71 7.53 -51.93 -0.39 0.32 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -29.88 352.37 -8.58 -38.46 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.65 Total: 7.19 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -2.52 Total: -11.80 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.40 Total: -38.11 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.11 Total: -16.40 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.88 -8.58 -38.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700958087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.174 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds