Wall clock time and date at job start Tue Mar 31 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47265 * 2 1 4 4 H 1.08999 * 109.46744 * 304.89768 * 3 2 1 5 5 C 1.50705 * 109.47083 * 184.90190 * 3 2 1 6 6 H 1.07992 * 119.99792 * 245.45341 * 5 3 2 7 7 C 1.37872 * 119.99984 * 65.45248 * 5 3 2 8 8 N 1.31520 * 120.00158 * 9.46863 * 7 5 3 9 9 Si 1.86793 * 120.00245 * 189.47081 * 7 5 3 10 10 H 1.48505 * 109.47527 * 84.99361 * 9 7 5 11 11 H 1.48500 * 109.47575 * 204.99733 * 9 7 5 12 12 H 1.48506 * 109.46824 * 324.99253 * 9 7 5 13 13 N 1.46502 * 109.47088 * 64.90160 * 3 2 1 14 14 C 1.34769 * 120.00073 * 275.00102 * 13 3 2 15 15 O 1.21284 * 120.00134 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00090 * 180.02562 * 14 13 3 17 17 C 1.53008 * 109.47124 * 180.02562 * 16 14 13 18 18 O 1.42900 * 109.47103 * 179.97438 * 17 16 14 19 19 C 1.35900 * 117.00049 * 179.97438 * 18 17 16 20 20 C 1.38756 * 120.05514 * 359.97438 * 19 18 17 21 21 C 1.38118 * 119.94346 * 180.02562 * 20 19 18 22 22 C 1.38285 * 120.05621 * 359.97438 * 21 20 19 23 23 C 1.38246 * 120.11349 * 0.02562 * 22 21 20 24 24 C 1.38166 * 120.05670 * 359.97438 * 23 22 21 25 25 C 1.50701 * 120.03336 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.47528 * 59.99789 * 1 2 3 27 27 H 1.09001 * 109.47461 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47124 * 299.99654 * 1 2 3 29 29 H 1.09008 * 109.46850 * 239.99881 * 2 1 3 30 30 H 1.09002 * 109.47218 * 120.00609 * 2 1 3 31 31 H 0.97002 * 120.00148 * 179.97438 * 8 7 5 32 32 H 0.96995 * 119.99520 * 94.99543 * 13 3 2 33 33 H 1.08994 * 109.47183 * 59.99944 * 16 14 13 34 34 H 1.09000 * 109.46783 * 299.99582 * 16 14 13 35 35 H 1.08994 * 109.47155 * 59.99905 * 17 16 14 36 36 H 1.09000 * 109.46931 * 299.99469 * 17 16 14 37 37 H 1.08002 * 120.02609 * 359.97438 * 20 19 18 38 38 H 1.07995 * 119.96963 * 179.72118 * 21 20 19 39 39 H 1.08004 * 119.94821 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.97814 * 179.97438 * 23 22 21 41 41 H 1.09006 * 109.46640 * 270.02160 * 25 24 23 42 42 H 1.08998 * 109.47037 * 30.01242 * 25 24 23 43 43 H 1.09000 * 109.47419 * 150.01781 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 -0.8429 5 6 3.5422 1.4442 -0.1214 6 1 4.1493 1.8089 0.6938 7 6 4.1412 0.9800 -1.2732 8 7 3.4096 0.7114 -2.3326 9 14 5.9918 0.7326 -1.3291 10 1 6.3289 -0.6069 -0.7837 11 1 6.4618 0.8274 -2.7345 12 1 6.6562 1.7808 -0.5133 13 7 1.6504 2.0982 1.2508 14 6 0.4330 2.6651 1.3637 15 8 -0.3403 2.6321 0.4299 16 6 0.0325 3.3401 2.6501 17 6 -1.3867 3.8957 2.5142 18 8 -1.7667 4.5353 3.7343 19 6 -3.0079 5.0866 3.7813 20 6 -3.8429 5.0140 2.6755 21 6 -5.1038 5.5756 2.7256 22 6 -5.5344 6.2094 3.8768 23 6 -4.7044 6.2831 4.9799 24 6 -3.4422 5.7229 4.9349 25 6 -2.5377 5.8040 6.1375 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8311 0.3852 -3.1431 32 1 2.2687 2.1242 1.9977 33 1 0.7235 4.1557 2.8630 34 1 0.0625 2.6165 3.4647 35 1 -2.0774 3.0799 2.3016 36 1 -1.4171 4.6193 1.6996 37 1 -3.5069 4.5195 1.7761 38 1 -5.7523 5.5233 1.8637 39 1 -6.5206 6.6483 3.9139 40 1 -5.0428 6.7789 5.8777 41 1 -1.9379 6.7124 6.0803 42 1 -3.1409 5.8235 7.0452 43 1 -1.8801 4.9349 6.1569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700958087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:49 Heat of formation + Delta-G solvation = -88.942115 kcal Electronic energy + Delta-G solvation = -22688.171443 eV Core-core repulsion = 19311.158663 eV Total energy + Delta-G solvation = -3377.012780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.29936 -40.63096 -38.45175 -36.95545 -34.31429 -33.88413 -33.29701 -32.27880 -30.70324 -28.97797 -27.62621 -25.95059 -24.74459 -22.84352 -22.48921 -21.73913 -21.05448 -19.33483 -18.59186 -17.52567 -17.38008 -17.11611 -16.82772 -16.42917 -16.19832 -16.00534 -15.28664 -14.84731 -14.69252 -14.52091 -14.42005 -14.01846 -13.98881 -13.52530 -13.30735 -13.20473 -13.12223 -12.94007 -12.69959 -12.67615 -12.60111 -12.22001 -12.19849 -12.08119 -11.75939 -11.69958 -11.61780 -11.10031 -10.69824 -10.52627 -9.76627 -9.65141 -9.07563 -8.20037 -6.32837 0.37746 0.49310 1.44455 1.45418 1.54708 1.81870 1.91033 2.39975 2.81594 2.89425 3.11936 3.68130 3.86796 3.94209 3.95312 4.14347 4.22087 4.31577 4.43080 4.46055 4.50162 4.52742 4.66020 4.72606 4.74538 4.81064 4.82524 4.87511 4.99941 5.05495 5.23386 5.35378 5.40922 5.43437 5.52566 5.54399 5.60762 5.61483 5.74685 5.89426 5.91565 6.07187 6.40578 6.76467 6.96926 7.33453 7.56996 8.88641 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032288 B = 0.002763 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.984880 B =10133.150162 C =10574.520002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.276 3.724 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.703 5.703 14 C 0.503 3.497 15 O -0.589 6.589 16 C -0.125 4.125 17 C 0.085 3.915 18 O -0.318 6.318 19 C 0.105 3.895 20 C -0.223 4.223 21 C -0.096 4.096 22 C -0.157 4.157 23 C -0.087 4.087 24 C -0.133 4.133 25 C -0.103 4.103 26 H 0.025 0.975 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.264 0.736 32 H 0.406 0.594 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.121 0.879 38 H 0.139 0.861 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.869 9.085 16.916 23.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C 0.172 3.828 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.352 5.352 14 C 0.290 3.710 15 O -0.471 6.471 16 C -0.165 4.165 17 C 0.009 3.991 18 O -0.232 6.232 19 C 0.060 3.940 20 C -0.242 4.242 21 C -0.114 4.114 22 C -0.175 4.175 23 C -0.105 4.105 24 C -0.134 4.134 25 C -0.159 4.159 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.241 0.759 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.139 0.861 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.173 0.827 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.217 8.978 16.209 22.760 hybrid contribution 1.142 -0.423 -0.881 1.503 sum -12.075 8.555 15.328 21.306 Atomic orbital electron populations 1.21687 0.96659 0.99356 1.00501 1.21710 0.94110 0.99049 1.00376 1.18383 0.93683 0.89082 0.81657 0.97859 1.21559 0.91432 1.43636 1.02124 0.90877 1.25768 1.03118 0.94851 0.94619 1.70134 1.37777 1.44841 1.02780 0.85449 0.79334 0.79047 0.77068 1.19588 1.21515 1.18775 1.46211 1.15491 1.55795 1.17659 1.20775 0.81969 0.78599 0.89644 1.90681 1.52517 1.61391 1.42500 1.21390 0.96362 1.02846 0.95913 1.22266 0.95754 0.96428 0.84628 1.85920 1.29925 1.69721 1.37623 1.19151 0.84556 0.95292 0.95006 1.21487 0.97034 1.06919 0.98726 1.21237 0.94730 0.96211 0.99248 1.21408 1.01382 1.01561 0.93117 1.21258 0.91863 0.97646 0.99738 1.19656 0.97256 1.01712 0.94742 1.20630 0.98367 1.02583 0.94340 0.95572 0.93417 0.93325 0.93166 0.93177 0.92659 0.75889 0.86144 0.85766 0.92110 0.92423 0.86083 0.84307 0.83294 0.82653 0.90974 0.89751 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.51 71.98 0.61 -4.82 16 2 C -0.11 -5.40 5.50 30.59 0.17 -5.23 16 3 C 0.28 13.78 2.11 44.25 0.09 13.87 16 4 H 0.00 0.21 7.52 -2.39 -0.02 0.19 16 5 C -0.55 -28.57 8.66 25.60 0.22 -28.34 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.90 5.16 84.65 0.44 1.34 16 8 N -0.92 -52.93 12.16 21.45 0.26 -52.67 16 9 Si 0.97 41.74 29.55 68.60 2.03 43.77 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 13 N -0.70 -27.48 5.02 -446.10 -2.24 -29.72 16 14 C 0.50 18.58 6.39 87.66 0.56 19.14 16 15 O -0.59 -26.65 13.12 -3.04 -0.04 -26.69 16 16 C -0.13 -3.24 6.07 29.85 0.18 -3.06 16 17 C 0.08 2.34 4.03 71.98 0.29 2.63 16 18 O -0.32 -8.38 9.18 -92.42 -0.85 -9.23 16 19 C 0.11 2.68 6.66 22.51 0.15 2.83 16 20 C -0.22 -5.57 9.04 22.37 0.20 -5.37 16 21 C -0.10 -1.95 10.04 22.25 0.22 -1.72 16 22 C -0.16 -2.62 10.04 22.28 0.22 -2.40 16 23 C -0.09 -1.46 9.70 22.25 0.22 -1.25 16 24 C -0.13 -2.79 5.89 -19.77 -0.12 -2.91 16 25 C -0.10 -1.70 9.79 71.24 0.70 -1.00 16 26 H 0.03 1.24 7.84 -2.39 -0.02 1.22 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 2.01 5.65 -2.38 -0.01 2.00 16 29 H 0.05 2.68 6.80 -2.38 -0.02 2.66 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.41 13.15 8.53 -92.71 -0.79 12.35 16 33 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.06 1.77 7.62 -2.39 -0.02 1.75 16 36 H 0.06 1.72 7.62 -2.39 -0.02 1.70 16 37 H 0.12 3.17 6.30 -2.91 -0.02 3.15 16 38 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 43 H 0.06 1.13 7.53 -2.39 -0.02 1.12 16 Total: -1.00 -66.91 352.37 3.53 -63.38 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.21 Total: 27.45 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.16 Total: -16.28 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -1.98 Total: -82.39 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.89 Total: -35.92 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -66.91 3.53 -63.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700958087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.567 kcal (2) G-P(sol) polarization free energy of solvation -66.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds