Wall clock time and date at job start Tue Mar 31 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46888 * 2 1 4 4 H 1.08999 * 109.47171 * 55.00140 * 3 2 1 5 5 C 1.50699 * 109.46898 * 174.99950 * 3 2 1 6 6 H 1.08006 * 119.99487 * 119.99979 * 5 3 2 7 7 C 1.37870 * 120.00380 * 300.00011 * 5 3 2 8 8 N 1.31516 * 120.00158 * 179.97438 * 7 5 3 9 9 Si 1.86806 * 119.99778 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47140 * 89.99703 * 9 7 5 11 11 H 1.48504 * 109.46886 * 209.99789 * 9 7 5 12 12 H 1.48499 * 109.47106 * 329.99686 * 9 7 5 13 13 N 1.46500 * 109.47118 * 295.00125 * 3 2 1 14 14 C 1.34783 * 119.99694 * 85.00104 * 13 3 2 15 15 O 1.21278 * 120.00198 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99397 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46600 * 180.02562 * 16 14 13 18 18 O 1.42903 * 109.47006 * 180.02562 * 17 16 14 19 19 C 1.35899 * 116.99930 * 180.02562 * 18 17 16 20 20 C 1.38747 * 120.05586 * 359.97438 * 19 18 17 21 21 C 1.38125 * 119.94590 * 180.02562 * 20 19 18 22 22 C 1.38289 * 120.05159 * 359.97438 * 21 20 19 23 23 C 1.38243 * 120.11362 * 0.02562 * 22 21 20 24 24 C 1.38163 * 120.05438 * 359.97438 * 23 22 21 25 25 C 1.50708 * 120.02715 * 179.97438 * 24 23 22 26 26 H 1.09003 * 109.46850 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46976 * 299.99879 * 1 2 3 28 28 H 1.09000 * 109.47297 * 59.99364 * 1 2 3 29 29 H 1.08998 * 109.46860 * 240.00652 * 2 1 3 30 30 H 1.08995 * 109.47092 * 119.99941 * 2 1 3 31 31 H 0.97004 * 119.99774 * 179.97438 * 8 7 5 32 32 H 0.96991 * 120.00191 * 264.99587 * 13 3 2 33 33 H 1.08993 * 109.46956 * 60.00299 * 16 14 13 34 34 H 1.09003 * 109.47247 * 299.99527 * 16 14 13 35 35 H 1.08998 * 109.47474 * 59.99819 * 17 16 14 36 36 H 1.08995 * 109.46823 * 299.99839 * 17 16 14 37 37 H 1.08000 * 120.03046 * 0.02562 * 20 19 18 38 38 H 1.07993 * 119.97844 * 179.72247 * 21 20 19 39 39 H 1.08004 * 119.94567 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.97538 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47128 * 270.02582 * 25 24 23 42 42 H 1.08999 * 109.46873 * 30.02607 * 25 24 23 43 43 H 1.09000 * 109.47139 * 150.02308 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4541 0.8797 1.3357 9 14 3.0964 0.1089 2.5700 10 1 2.8756 -1.3271 2.2633 11 1 3.7938 0.2348 3.8751 12 1 1.7877 0.8073 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3668 15 8 -0.3393 2.6327 -0.4340 16 6 0.0365 3.3387 -2.6544 17 6 -1.3823 3.8954 -2.5206 18 8 -1.7605 4.5342 -3.7416 19 6 -3.0012 5.0864 -3.7905 20 6 -3.8379 5.0144 -2.6860 21 6 -5.0988 5.5760 -2.7384 22 6 -5.5272 6.2100 -3.8902 23 6 -4.6955 6.2831 -4.9920 24 6 -3.4334 5.7230 -4.9447 25 6 -2.5274 5.8025 -6.1464 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8771 0.4819 2.1127 32 1 2.2718 2.1233 -1.9977 33 1 0.0679 2.6146 -3.4685 34 1 0.7279 4.1543 -2.8666 35 1 -1.4133 4.6195 -1.7065 36 1 -2.0739 3.0801 -2.3082 37 1 -3.5036 4.5197 -1.7861 38 1 -5.7521 5.5163 -1.8806 39 1 -6.5136 6.6482 -3.9294 40 1 -5.0325 6.7785 -5.8906 41 1 -2.6908 4.9329 -6.7828 42 1 -2.7476 6.7104 -6.7080 43 1 -1.4884 5.8219 -5.8174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700958089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:52 Heat of formation + Delta-G solvation = -61.951234 kcal Electronic energy + Delta-G solvation = -22786.948158 eV Core-core repulsion = 19411.105790 eV Total energy + Delta-G solvation = -3375.842368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39490 -39.33767 -37.57917 -35.45514 -33.07980 -32.53064 -32.05562 -31.14027 -29.86472 -27.60823 -26.89544 -24.75648 -22.71276 -21.93900 -21.66008 -20.47565 -19.62817 -18.33692 -17.11842 -16.42245 -16.24841 -15.93217 -15.70262 -15.45484 -14.92634 -14.58706 -14.17779 -13.84373 -13.57399 -13.36826 -13.26892 -12.98929 -12.79138 -12.44912 -12.27869 -12.02100 -11.89669 -11.77550 -11.63965 -11.50013 -11.12427 -10.94165 -10.87759 -10.78516 -10.65653 -9.96655 -9.62275 -9.28634 -9.20708 -8.99819 -8.79184 -8.25134 -8.13603 -6.24388 -4.27256 1.15051 1.28991 2.92677 3.12834 3.20875 3.32884 3.37291 3.59307 4.08862 4.28319 4.60539 4.65050 4.80301 4.94066 4.96224 5.09149 5.09641 5.14442 5.26365 5.40349 5.49674 5.53612 5.56918 5.69044 5.74454 5.77335 5.92198 5.98428 6.03896 6.13465 6.20529 6.29036 6.36423 6.61047 6.64887 6.65400 6.79471 6.90301 7.20916 7.24880 7.30281 7.46744 8.09042 8.46810 8.71336 8.85624 9.36156 10.87642 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033006 B = 0.002912 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.127927 B = 9613.926937 C =10076.757017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.508 3.492 15 O -0.553 6.553 16 C -0.141 4.141 17 C 0.077 3.923 18 O -0.315 6.315 19 C 0.135 3.865 20 C -0.204 4.204 21 C -0.086 4.086 22 C -0.159 4.159 23 C -0.087 4.087 24 C -0.121 4.121 25 C -0.105 4.105 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.268 0.732 32 H 0.397 0.603 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.745 8.061 -12.626 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.345 5.345 14 C 0.293 3.707 15 O -0.433 6.433 16 C -0.182 4.182 17 C 0.002 3.998 18 O -0.229 6.229 19 C 0.089 3.911 20 C -0.223 4.223 21 C -0.104 4.104 22 C -0.178 4.178 23 C -0.105 4.105 24 C -0.122 4.122 25 C -0.161 4.161 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.937 7.961 -11.973 22.988 hybrid contribution -0.147 -0.601 0.693 0.929 sum -18.084 7.360 -11.280 22.548 Atomic orbital electron populations 1.21876 0.96963 0.99063 1.02182 1.22293 0.94338 0.99958 1.01181 1.19168 0.95674 0.88503 0.82776 0.93263 1.21047 0.88579 1.39900 1.07899 0.90159 1.24837 0.94874 0.95129 0.97680 1.69869 1.08688 1.44443 1.29820 0.86900 0.80942 0.79960 0.80910 1.20222 1.22144 1.18479 1.46143 1.14670 1.55586 1.18103 1.20064 0.82787 0.79234 0.88623 1.90681 1.51547 1.60301 1.40754 1.21503 0.96384 1.02177 0.98109 1.22467 0.95746 0.97048 0.84583 1.85966 1.29351 1.69382 1.38182 1.18818 0.84455 0.93927 0.93910 1.21392 0.95959 1.05974 0.98944 1.20950 0.95197 0.96308 0.97976 1.21022 1.00259 1.02687 0.93795 1.20858 0.92520 0.98601 0.98510 1.19290 0.96206 1.01981 0.94739 1.20605 0.99072 1.01778 0.94682 0.94943 0.92874 0.93014 0.92248 0.92734 0.92246 0.76990 0.88228 0.88085 0.91046 0.91132 0.85000 0.85898 0.86101 0.85607 0.91468 0.91857 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.52 37.16 0.32 -2.49 16 2 C -0.14 -3.02 5.11 -26.73 -0.14 -3.15 16 3 C 0.24 5.57 1.83 -69.08 -0.13 5.44 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.92 16 5 C -0.54 -14.21 9.31 -34.44 -0.32 -14.53 16 6 H 0.08 2.24 7.98 -52.48 -0.42 1.82 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 9 Si 0.88 21.50 24.41 -169.99 -4.15 17.35 16 10 H -0.28 -6.50 6.83 56.52 0.39 -6.12 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 13 N -0.70 -13.05 5.02 -54.93 -0.28 -13.33 16 14 C 0.51 8.77 6.40 -10.98 -0.07 8.70 16 15 O -0.55 -11.24 13.12 5.56 0.07 -11.17 16 16 C -0.14 -1.80 6.07 -27.88 -0.17 -1.97 16 17 C 0.08 0.99 4.03 37.16 0.15 1.14 16 18 O -0.32 -4.03 9.18 -19.42 -0.18 -4.21 16 19 C 0.13 1.67 6.66 -39.22 -0.26 1.41 16 20 C -0.20 -2.40 9.04 -39.43 -0.36 -2.75 16 21 C -0.09 -0.87 10.04 -39.60 -0.40 -1.27 16 22 C -0.16 -1.47 10.04 -39.56 -0.40 -1.86 16 23 C -0.09 -0.81 9.70 -39.61 -0.38 -1.20 16 24 C -0.12 -1.32 5.89 -104.47 -0.62 -1.94 16 25 C -0.10 -0.94 9.79 36.01 0.35 -0.59 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.10 7.85 -51.92 -0.41 0.69 16 28 H 0.05 0.98 5.65 -51.93 -0.29 0.68 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.25 3.21 -51.93 -0.17 1.09 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.40 6.51 8.54 -40.82 -0.35 6.16 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.96 7.62 -51.93 -0.40 0.56 16 36 H 0.07 0.93 7.62 -51.93 -0.40 0.53 16 37 H 0.13 1.52 6.30 -52.49 -0.33 1.19 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 43 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 LS Contribution 344.25 15.07 5.19 5.19 Total: -1.00 -30.83 344.25 -7.56 -38.40 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.48 Total: 6.13 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -2.51 Total: -12.97 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.50 Total: -38.71 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.11 Total: -15.38 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.15 Total: 17.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.83 -7.56 -38.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700958089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.556 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds