Wall clock time and date at job start Tue Mar 31 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46888 * 2 1 4 4 H 1.08999 * 109.47171 * 55.00140 * 3 2 1 5 5 C 1.50699 * 109.46898 * 174.99950 * 3 2 1 6 6 H 1.08006 * 119.99487 * 119.99979 * 5 3 2 7 7 C 1.37870 * 120.00380 * 300.00011 * 5 3 2 8 8 N 1.31516 * 120.00158 * 179.97438 * 7 5 3 9 9 Si 1.86806 * 119.99778 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47140 * 89.99703 * 9 7 5 11 11 H 1.48504 * 109.46886 * 209.99789 * 9 7 5 12 12 H 1.48499 * 109.47106 * 329.99686 * 9 7 5 13 13 N 1.46500 * 109.47118 * 295.00125 * 3 2 1 14 14 C 1.34783 * 119.99694 * 85.00104 * 13 3 2 15 15 O 1.21278 * 120.00198 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99397 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46600 * 180.02562 * 16 14 13 18 18 O 1.42903 * 109.47006 * 180.02562 * 17 16 14 19 19 C 1.35899 * 116.99930 * 180.02562 * 18 17 16 20 20 C 1.38747 * 120.05586 * 359.97438 * 19 18 17 21 21 C 1.38125 * 119.94590 * 180.02562 * 20 19 18 22 22 C 1.38289 * 120.05159 * 359.97438 * 21 20 19 23 23 C 1.38243 * 120.11362 * 0.02562 * 22 21 20 24 24 C 1.38163 * 120.05438 * 359.97438 * 23 22 21 25 25 C 1.50708 * 120.02715 * 179.97438 * 24 23 22 26 26 H 1.09003 * 109.46850 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46976 * 299.99879 * 1 2 3 28 28 H 1.09000 * 109.47297 * 59.99364 * 1 2 3 29 29 H 1.08998 * 109.46860 * 240.00652 * 2 1 3 30 30 H 1.08995 * 109.47092 * 119.99941 * 2 1 3 31 31 H 0.97004 * 119.99774 * 179.97438 * 8 7 5 32 32 H 0.96991 * 120.00191 * 264.99587 * 13 3 2 33 33 H 1.08993 * 109.46956 * 60.00299 * 16 14 13 34 34 H 1.09003 * 109.47247 * 299.99527 * 16 14 13 35 35 H 1.08998 * 109.47474 * 59.99819 * 17 16 14 36 36 H 1.08995 * 109.46823 * 299.99839 * 17 16 14 37 37 H 1.08000 * 120.03046 * 0.02562 * 20 19 18 38 38 H 1.07993 * 119.97844 * 179.72247 * 21 20 19 39 39 H 1.08004 * 119.94567 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.97538 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47128 * 270.02582 * 25 24 23 42 42 H 1.08999 * 109.46873 * 30.02607 * 25 24 23 43 43 H 1.09000 * 109.47139 * 150.02308 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4541 0.8797 1.3357 9 14 3.0964 0.1089 2.5700 10 1 2.8756 -1.3271 2.2633 11 1 3.7938 0.2348 3.8751 12 1 1.7877 0.8073 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3668 15 8 -0.3393 2.6327 -0.4340 16 6 0.0365 3.3387 -2.6544 17 6 -1.3823 3.8954 -2.5206 18 8 -1.7605 4.5342 -3.7416 19 6 -3.0012 5.0864 -3.7905 20 6 -3.8379 5.0144 -2.6860 21 6 -5.0988 5.5760 -2.7384 22 6 -5.5272 6.2100 -3.8902 23 6 -4.6955 6.2831 -4.9920 24 6 -3.4334 5.7230 -4.9447 25 6 -2.5274 5.8025 -6.1464 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8771 0.4819 2.1127 32 1 2.2718 2.1233 -1.9977 33 1 0.0679 2.6146 -3.4685 34 1 0.7279 4.1543 -2.8666 35 1 -1.4133 4.6195 -1.7065 36 1 -2.0739 3.0801 -2.3082 37 1 -3.5036 4.5197 -1.7861 38 1 -5.7521 5.5163 -1.8806 39 1 -6.5136 6.6482 -3.9294 40 1 -5.0325 6.7785 -5.8906 41 1 -2.6908 4.9329 -6.7828 42 1 -2.7476 6.7104 -6.7080 43 1 -1.4884 5.8219 -5.8174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700958089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:52 Heat of formation + Delta-G solvation = -81.263790 kcal Electronic energy + Delta-G solvation = -22787.785613 eV Core-core repulsion = 19411.105790 eV Total energy + Delta-G solvation = -3376.679823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32318 -40.72981 -38.46663 -37.15638 -34.41808 -33.92545 -33.50409 -32.41302 -30.71428 -29.43515 -27.63323 -25.93273 -24.48162 -22.96245 -22.52998 -21.90876 -21.16438 -19.41562 -18.78202 -17.66326 -17.43620 -17.38966 -16.84084 -16.44401 -16.27581 -16.01844 -15.30951 -15.16402 -14.70649 -14.64143 -14.48743 -14.13355 -14.01303 -13.82976 -13.65052 -13.30209 -13.12689 -12.97952 -12.78367 -12.69708 -12.66422 -12.39806 -12.21238 -11.86449 -11.75495 -11.69834 -11.39476 -11.24490 -10.87756 -10.74752 -9.78278 -9.76528 -9.07521 -8.39001 -6.44464 0.37854 0.49388 1.26105 1.34377 1.43748 1.73779 1.87937 2.24949 2.76785 2.81740 2.97014 3.66329 3.86804 3.93287 3.94432 4.09090 4.22037 4.23633 4.30254 4.32270 4.42914 4.44288 4.52455 4.66730 4.73578 4.80920 4.81893 4.84688 4.87096 4.99913 5.00968 5.11786 5.22051 5.35137 5.40495 5.43198 5.51500 5.54305 5.60907 5.65306 5.89416 6.13044 6.41010 6.58174 6.86265 7.18516 7.43996 8.76198 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033006 B = 0.002912 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.127927 B = 9613.926937 C =10076.757017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.249 3.751 4 H 0.023 0.977 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.698 5.698 14 C 0.509 3.491 15 O -0.583 6.583 16 C -0.127 4.127 17 C 0.084 3.916 18 O -0.319 6.319 19 C 0.105 3.895 20 C -0.221 4.221 21 C -0.096 4.096 22 C -0.157 4.157 23 C -0.088 4.088 24 C -0.134 4.134 25 C -0.103 4.103 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.270 0.730 32 H 0.408 0.592 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.124 0.876 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.999 8.301 -14.159 25.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C 0.144 3.856 4 H 0.041 0.959 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.764 3.236 10 H -0.186 1.186 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.348 5.348 14 C 0.296 3.704 15 O -0.465 6.465 16 C -0.167 4.167 17 C 0.008 3.992 18 O -0.233 6.233 19 C 0.060 3.940 20 C -0.240 4.240 21 C -0.114 4.114 22 C -0.175 4.175 23 C -0.106 4.106 24 C -0.134 4.134 25 C -0.160 4.160 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.244 0.756 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.172 0.828 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.206 8.209 -13.542 25.671 hybrid contribution 0.497 -0.567 1.093 1.327 sum -19.709 7.642 -12.449 24.532 Atomic orbital electron populations 1.21767 0.95155 1.00556 1.01634 1.22214 0.95884 0.98492 1.01071 1.18787 0.93134 0.89693 0.83967 0.95923 1.21308 0.90432 1.38470 1.06925 0.92463 1.25552 0.95714 0.95933 0.99888 1.69979 1.10284 1.46203 1.30852 0.86037 0.79309 0.79960 0.78324 1.18573 1.22209 1.18442 1.45974 1.15748 1.55923 1.17107 1.20733 0.81632 0.78296 0.89746 1.90673 1.52270 1.61196 1.42343 1.21390 0.96519 1.02905 0.95866 1.22289 0.95656 0.96588 0.84638 1.85926 1.29987 1.69729 1.37662 1.19131 0.84487 0.95347 0.94994 1.21486 0.96938 1.06841 0.98746 1.21244 0.94818 0.96134 0.99210 1.21408 1.01350 1.01622 0.93154 1.21249 0.91801 0.97894 0.99628 1.19649 0.97226 1.01754 0.94793 1.20630 0.98060 1.03035 0.94236 0.92372 0.94487 0.92518 0.91203 0.93929 0.92098 0.75601 0.85673 0.86239 0.92220 0.91782 0.85817 0.84236 0.83373 0.82790 0.90908 0.89878 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 8.52 71.98 0.61 -4.39 16 2 C -0.14 -5.81 5.11 30.60 0.16 -5.65 16 3 C 0.25 11.42 1.83 44.25 0.08 11.50 16 4 H 0.02 1.18 6.64 -2.39 -0.02 1.16 16 5 C -0.53 -28.61 9.31 25.60 0.24 -28.37 16 6 H 0.06 3.26 7.98 -2.91 -0.02 3.24 16 7 C 0.03 1.62 5.45 84.65 0.46 2.08 16 8 N -0.93 -55.83 13.96 21.44 0.30 -55.53 16 9 Si 0.94 44.53 24.41 68.60 1.67 46.20 16 10 H -0.26 -11.64 6.83 99.48 0.68 -10.96 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 12 H -0.26 -12.24 6.53 99.48 0.65 -11.59 16 13 N -0.70 -25.65 5.02 -446.08 -2.24 -27.89 16 14 C 0.51 17.11 6.40 87.66 0.56 17.67 16 15 O -0.58 -23.58 13.12 -3.02 -0.04 -23.62 16 16 C -0.13 -3.02 6.07 29.85 0.18 -2.84 16 17 C 0.08 2.12 4.03 71.98 0.29 2.41 16 18 O -0.32 -7.96 9.18 -92.41 -0.85 -8.81 16 19 C 0.11 2.56 6.66 22.50 0.15 2.71 16 20 C -0.22 -5.16 9.04 22.36 0.20 -4.95 16 21 C -0.10 -1.81 10.04 22.25 0.22 -1.59 16 22 C -0.16 -2.49 10.04 22.28 0.22 -2.27 16 23 C -0.09 -1.41 9.70 22.25 0.22 -1.20 16 24 C -0.13 -2.70 5.89 -19.77 -0.12 -2.82 16 25 C -0.10 -1.66 9.79 71.24 0.70 -0.96 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.04 1.48 7.85 -2.38 -0.02 1.47 16 28 H 0.06 2.04 5.65 -2.39 -0.01 2.03 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.04 1.89 3.21 -2.39 -0.01 1.88 16 31 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.41 13.01 8.54 -92.72 -0.79 12.22 16 33 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.06 1.62 7.62 -2.39 -0.02 1.61 16 36 H 0.06 1.68 7.62 -2.39 -0.02 1.66 16 37 H 0.12 2.95 6.30 -2.91 -0.02 2.94 16 38 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 42 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 43 H 0.06 1.11 7.53 -2.39 -0.02 1.09 16 Total: -1.00 -67.14 344.25 3.16 -63.98 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.14 Total: 24.34 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 4.18 Total: -18.67 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -1.94 Total: -83.42 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.89 Total: -32.43 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.67 Total: 46.20 kcal Total: -67.14 3.16 -63.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700958089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.287 kcal (2) G-P(sol) polarization free energy of solvation -67.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds