Wall clock time and date at job start Tue Mar 31 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 O 1.42896 * 109.46896 * 180.02562 * 17 16 14 19 19 C 1.35906 * 116.99566 * 179.97438 * 18 17 16 20 20 C 1.38728 * 120.05523 * 359.73155 * 19 18 17 21 21 C 1.38145 * 119.94325 * 179.69692 * 20 19 18 22 22 C 1.38271 * 120.05500 * 0.59173 * 21 20 19 23 23 C 1.50696 * 119.94523 * 179.69879 * 22 21 20 24 24 C 1.38267 * 120.10908 * 359.68364 * 22 21 20 25 25 C 1.38146 * 120.05453 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 30 30 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 31 31 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 33 33 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 34 34 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 35 35 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 36 36 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 37 37 H 1.07999 * 120.02943 * 359.97438 * 20 19 18 38 38 H 1.08004 * 119.97472 * 180.27351 * 21 20 19 39 39 H 1.08996 * 109.47623 * 269.97883 * 23 22 21 40 40 H 1.09004 * 109.46938 * 29.98250 * 23 22 21 41 41 H 1.08999 * 109.46915 * 149.98237 * 23 22 21 42 42 H 1.08002 * 119.97344 * 179.97438 * 24 22 21 43 43 H 1.07998 * 120.02514 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 8 -1.7352 4.5248 3.7747 19 6 -2.9756 5.0771 3.8332 20 6 -3.8173 5.0131 2.7322 21 6 -5.0800 5.5698 2.7963 22 6 -5.5006 6.2011 3.9523 23 6 -6.8760 6.8135 4.0172 24 6 -4.6615 6.2712 5.0490 25 6 -3.4001 5.7108 4.9919 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1425 -0.6140 32 1 2.2853 2.1184 1.9978 33 1 0.0905 2.6048 3.4843 34 1 0.7469 4.1462 2.8830 35 1 -1.4015 4.6154 1.7380 36 1 -2.0586 3.0742 2.3391 37 1 -3.4873 4.5246 1.8273 38 1 -5.7373 5.5164 1.9410 39 1 -6.8280 7.8507 3.6856 40 1 -7.5528 6.2560 3.3697 41 1 -7.2420 6.7768 5.0432 42 1 -4.9921 6.7652 5.9507 43 1 -2.7449 5.7662 5.8487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706044839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:55 Heat of formation + Delta-G solvation = -70.955163 kcal Electronic energy + Delta-G solvation = -22539.981697 eV Core-core repulsion = 19163.748889 eV Total energy + Delta-G solvation = -3376.232807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33237 -39.32589 -37.81447 -35.42296 -32.79659 -32.44439 -31.76853 -31.24132 -30.74827 -27.40026 -26.48934 -24.55048 -22.66323 -22.26510 -21.28667 -20.39819 -19.60965 -18.51703 -17.68127 -16.41295 -16.34683 -15.90556 -15.46725 -15.43734 -14.87985 -14.44671 -14.00989 -13.81021 -13.67902 -13.64037 -13.22575 -13.11372 -12.60883 -12.47282 -12.36606 -12.23422 -11.91007 -11.76095 -11.69080 -11.53404 -10.98267 -10.88660 -10.75781 -10.68557 -10.50636 -9.85383 -9.75036 -9.30446 -9.18812 -8.93118 -8.55575 -8.20130 -8.15861 -6.59368 -4.27450 1.15910 1.23996 2.92521 3.13007 3.33099 3.42571 3.56127 3.56665 4.09865 4.37723 4.57919 4.66043 4.77200 4.81561 4.95099 5.05097 5.15766 5.15922 5.25807 5.28578 5.34891 5.53415 5.54728 5.64199 5.73251 5.78087 5.85397 5.97473 6.02132 6.11505 6.18095 6.21859 6.41146 6.61998 6.63664 6.70068 6.84895 6.95204 7.27928 7.29692 7.31453 7.58802 8.18619 8.38387 8.64592 8.89089 9.43215 10.81215 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035273 B = 0.002706 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.607389 B =10344.574429 C =10701.943211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.241 3.759 4 H 0.049 0.951 5 C -0.611 4.611 6 H 0.062 0.938 7 C 0.036 3.964 8 N -0.904 5.904 9 Si 1.049 2.951 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.698 5.698 14 C 0.507 3.493 15 O -0.553 6.553 16 C -0.142 4.142 17 C 0.077 3.923 18 O -0.319 6.319 19 C 0.131 3.869 20 C -0.203 4.203 21 C -0.080 4.080 22 C -0.132 4.132 23 C -0.108 4.108 24 C -0.083 4.083 25 C -0.152 4.152 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.269 0.731 32 H 0.394 0.606 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.126 0.874 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.492 8.826 12.033 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.137 3.863 4 H 0.067 0.933 5 C -0.649 4.649 6 H 0.080 0.920 7 C -0.170 4.170 8 N -0.537 5.537 9 Si 0.878 3.122 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.214 1.214 13 N -0.345 5.345 14 C 0.292 3.708 15 O -0.433 6.433 16 C -0.182 4.182 17 C 0.002 3.998 18 O -0.233 6.233 19 C 0.085 3.915 20 C -0.222 4.222 21 C -0.098 4.098 22 C -0.132 4.132 23 C -0.165 4.165 24 C -0.101 4.101 25 C -0.170 4.170 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.227 0.773 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.144 0.856 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.785 8.139 9.962 23.599 hybrid contribution 0.402 0.516 1.786 1.902 sum -19.383 8.655 11.747 24.261 Atomic orbital electron populations 1.21895 0.97173 0.99031 1.02095 1.22255 0.93999 0.99896 1.01437 1.19266 0.95952 0.88545 0.82501 0.93314 1.22164 0.89686 1.48228 1.04813 0.91976 1.25708 0.97509 0.93585 1.00240 1.70831 1.04420 1.42396 1.36071 0.83940 0.75310 0.77181 0.75813 1.20685 1.19886 1.21365 1.46224 1.14459 1.55654 1.18209 1.20072 0.82874 0.79290 0.88589 1.90676 1.51088 1.60286 1.41217 1.21516 0.96434 1.02163 0.98137 1.22463 0.95807 0.97091 0.84420 1.85979 1.29489 1.69569 1.38227 1.19009 0.84387 0.93735 0.94337 1.21394 0.95765 1.06000 0.99041 1.20853 0.95235 0.96329 0.97372 1.19824 0.97192 1.01805 0.94382 1.20703 0.92926 1.00435 1.02409 1.20813 0.92783 0.98423 0.98126 1.20427 0.97294 1.02262 0.97061 0.93215 0.92871 0.94920 0.92178 0.92693 0.92114 0.77280 0.88291 0.88195 0.91030 0.91079 0.84966 0.85857 0.91522 0.91775 0.91786 0.85562 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.52 37.16 0.32 -2.51 16 2 C -0.14 -2.98 5.20 -26.73 -0.14 -3.12 16 3 C 0.24 5.61 1.81 -69.08 -0.13 5.48 16 4 H 0.05 1.25 6.07 -51.93 -0.32 0.94 16 5 C -0.61 -16.26 9.09 -34.44 -0.31 -16.58 16 6 H 0.06 1.73 7.95 -52.48 -0.42 1.31 16 7 C 0.04 0.99 5.42 -17.82 -0.10 0.90 16 8 N -0.90 -26.86 13.70 55.43 0.76 -26.10 16 9 Si 1.05 25.21 25.39 -169.99 -4.32 20.89 16 10 H -0.28 -6.38 6.73 56.52 0.38 -6.00 16 11 H -0.27 -6.35 6.38 56.52 0.36 -5.99 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.70 -13.40 5.03 -54.93 -0.28 -13.68 16 14 C 0.51 8.96 6.42 -10.98 -0.07 8.89 16 15 O -0.55 -11.38 13.12 5.56 0.07 -11.31 16 16 C -0.14 -1.87 6.07 -27.88 -0.17 -2.04 16 17 C 0.08 1.02 4.03 37.16 0.15 1.17 16 18 O -0.32 -4.20 10.14 -19.44 -0.20 -4.40 16 19 C 0.13 1.63 6.69 -39.22 -0.26 1.37 16 20 C -0.20 -2.39 9.04 -39.43 -0.36 -2.75 16 21 C -0.08 -0.82 9.69 -39.60 -0.38 -1.20 16 22 C -0.13 -1.23 5.88 -104.60 -0.62 -1.85 16 23 C -0.11 -0.71 10.01 36.00 0.36 -0.35 16 24 C -0.08 -0.77 9.69 -39.60 -0.38 -1.16 16 25 C -0.15 -1.64 9.99 -39.43 -0.39 -2.03 16 26 H 0.05 0.95 5.64 -51.93 -0.29 0.66 16 27 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 1.36 4.43 -51.93 -0.23 1.13 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.27 7.90 8.72 -40.82 -0.36 7.54 16 32 H 0.39 6.72 8.53 -40.82 -0.35 6.37 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.98 7.61 -51.93 -0.39 0.58 16 36 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 37 H 0.13 1.53 6.30 -52.49 -0.33 1.20 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 41 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -30.86 346.94 -7.78 -38.64 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.57 Total: 6.50 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.48 Total: -15.78 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.48 Total: -39.78 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.12 Total: -15.71 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -4.32 Total: 20.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.86 -7.78 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706044839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.310 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds