Wall clock time and date at job start Tue Mar 31 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 O 1.42896 * 109.46896 * 180.02562 * 17 16 14 19 19 C 1.35906 * 116.99566 * 179.97438 * 18 17 16 20 20 C 1.38728 * 120.05523 * 359.73155 * 19 18 17 21 21 C 1.38145 * 119.94325 * 179.69692 * 20 19 18 22 22 C 1.38271 * 120.05500 * 0.59173 * 21 20 19 23 23 C 1.50696 * 119.94523 * 179.69879 * 22 21 20 24 24 C 1.38267 * 120.10908 * 359.68364 * 22 21 20 25 25 C 1.38146 * 120.05453 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 30 30 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 31 31 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 33 33 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 34 34 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 35 35 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 36 36 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 37 37 H 1.07999 * 120.02943 * 359.97438 * 20 19 18 38 38 H 1.08004 * 119.97472 * 180.27351 * 21 20 19 39 39 H 1.08996 * 109.47623 * 269.97883 * 23 22 21 40 40 H 1.09004 * 109.46938 * 29.98250 * 23 22 21 41 41 H 1.08999 * 109.46915 * 149.98237 * 23 22 21 42 42 H 1.08002 * 119.97344 * 179.97438 * 24 22 21 43 43 H 1.07998 * 120.02514 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 8 -1.7352 4.5248 3.7747 19 6 -2.9756 5.0771 3.8332 20 6 -3.8173 5.0131 2.7322 21 6 -5.0800 5.5698 2.7963 22 6 -5.5006 6.2011 3.9523 23 6 -6.8760 6.8135 4.0172 24 6 -4.6615 6.2712 5.0490 25 6 -3.4001 5.7108 4.9919 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1425 -0.6140 32 1 2.2853 2.1184 1.9978 33 1 0.0905 2.6048 3.4843 34 1 0.7469 4.1462 2.8830 35 1 -1.4015 4.6154 1.7380 36 1 -2.0586 3.0742 2.3391 37 1 -3.4873 4.5246 1.8273 38 1 -5.7373 5.5164 1.9410 39 1 -6.8280 7.8507 3.6856 40 1 -7.5528 6.2560 3.3697 41 1 -7.2420 6.7768 5.0432 42 1 -4.9921 6.7652 5.9507 43 1 -2.7449 5.7662 5.8487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706044839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:55 Heat of formation + Delta-G solvation = -90.135110 kcal Electronic energy + Delta-G solvation = -22540.813401 eV Core-core repulsion = 19163.748889 eV Total energy + Delta-G solvation = -3377.064512 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.29284 -40.71729 -38.69862 -37.15617 -34.49076 -33.83668 -33.06232 -32.10875 -31.80171 -29.19947 -27.25322 -25.66780 -24.23662 -23.43248 -22.24791 -21.82741 -21.21862 -19.87313 -19.26129 -17.68975 -17.50508 -17.17074 -16.83874 -16.24963 -16.21869 -15.63509 -15.22312 -14.92567 -14.75310 -14.52189 -14.47965 -14.41316 -14.31606 -14.15117 -13.80589 -13.40487 -12.97288 -12.75762 -12.65650 -12.55931 -12.48863 -12.41905 -12.28894 -11.72770 -11.70334 -11.64203 -11.50565 -11.00415 -10.78776 -10.67461 -9.97234 -9.83426 -9.01690 -8.79667 -6.48354 0.37411 0.43987 1.40005 1.49610 1.66755 1.71285 1.86044 2.38519 2.75645 2.78020 3.01532 3.62952 3.88293 3.90872 3.93861 4.05642 4.08994 4.28384 4.31017 4.36702 4.40352 4.44480 4.51957 4.62362 4.69774 4.78721 4.84342 4.85501 4.89307 5.06597 5.08767 5.16741 5.18891 5.27245 5.37208 5.41292 5.52649 5.62383 5.64192 5.68303 5.86724 5.98711 6.39040 6.50105 6.80824 7.26383 7.40595 8.59757 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035273 B = 0.002706 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.607389 B =10344.574429 C =10701.943211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C 0.245 3.755 4 H 0.026 0.974 5 C -0.605 4.605 6 H 0.041 0.959 7 C -0.011 4.011 8 N -0.935 5.935 9 Si 1.080 2.920 10 H -0.257 1.257 11 H -0.265 1.265 12 H -0.288 1.288 13 N -0.701 5.701 14 C 0.508 3.492 15 O -0.581 6.581 16 C -0.129 4.129 17 C 0.085 3.915 18 O -0.325 6.325 19 C 0.102 3.898 20 C -0.218 4.218 21 C -0.091 4.091 22 C -0.132 4.132 23 C -0.107 4.107 24 C -0.084 4.084 25 C -0.159 4.159 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.258 0.742 32 H 0.405 0.595 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.125 0.875 38 H 0.139 0.861 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.155 0.845 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.982 9.194 13.366 27.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.174 4.174 3 C 0.141 3.859 4 H 0.044 0.956 5 C -0.643 4.643 6 H 0.060 0.940 7 C -0.211 4.211 8 N -0.571 5.571 9 Si 0.903 3.097 10 H -0.183 1.183 11 H -0.190 1.190 12 H -0.214 1.214 13 N -0.350 5.350 14 C 0.295 3.705 15 O -0.463 6.463 16 C -0.168 4.168 17 C 0.009 3.991 18 O -0.239 6.239 19 C 0.057 3.943 20 C -0.237 4.237 21 C -0.109 4.109 22 C -0.133 4.133 23 C -0.164 4.164 24 C -0.102 4.102 25 C -0.178 4.178 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.240 0.760 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.172 0.828 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.289 8.517 11.338 26.417 hybrid contribution 1.109 0.509 1.466 1.908 sum -21.179 9.027 12.804 26.344 Atomic orbital electron populations 1.21781 0.95240 1.00587 1.01595 1.22159 0.95652 0.98297 1.01288 1.18921 0.93441 0.89842 0.83740 0.95615 1.22375 0.91631 1.46516 1.03783 0.94047 1.26846 0.97709 0.93688 1.02839 1.70931 1.05392 1.44753 1.36034 0.83544 0.74377 0.78502 0.73271 1.18274 1.18983 1.21428 1.46059 1.15580 1.56069 1.17252 1.20720 0.81704 0.78350 0.89734 1.90666 1.51752 1.61117 1.42743 1.21402 0.96668 1.02874 0.95879 1.22288 0.95649 0.96688 0.84477 1.85933 1.30225 1.69971 1.37784 1.19298 0.84367 0.95206 0.95406 1.21471 0.96645 1.06770 0.98828 1.21127 0.94912 0.96299 0.98530 1.20231 0.98434 1.00757 0.93840 1.20764 0.91263 1.00720 1.03622 1.21191 0.92060 0.97738 0.99187 1.20703 0.98197 1.02022 0.96858 0.92975 0.94123 0.92292 0.93103 0.92072 0.93315 0.76020 0.85836 0.86413 0.92083 0.91630 0.85696 0.84357 0.90625 0.91090 0.90350 0.82751 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 8.52 71.98 0.61 -4.39 16 2 C -0.14 -5.70 5.20 30.59 0.16 -5.54 16 3 C 0.25 11.33 1.81 44.24 0.08 11.41 16 4 H 0.03 1.33 6.07 -2.39 -0.01 1.31 16 5 C -0.60 -32.54 9.09 25.60 0.23 -32.31 16 6 H 0.04 2.35 7.95 -2.91 -0.02 2.32 16 7 C -0.01 -0.63 5.42 84.65 0.46 -0.17 16 8 N -0.94 -56.70 13.70 21.45 0.29 -56.40 16 9 Si 1.08 50.69 25.39 68.60 1.74 52.44 16 10 H -0.26 -11.10 6.73 99.48 0.67 -10.43 16 11 H -0.26 -11.97 6.38 99.48 0.63 -11.34 16 12 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 13 N -0.70 -26.33 5.03 -446.10 -2.24 -28.57 16 14 C 0.51 17.39 6.42 87.66 0.56 17.96 16 15 O -0.58 -23.63 13.12 -3.02 -0.04 -23.67 16 16 C -0.13 -3.15 6.07 29.85 0.18 -2.97 16 17 C 0.08 2.17 4.03 71.98 0.29 2.46 16 18 O -0.32 -8.30 10.14 -92.49 -0.94 -9.24 16 19 C 0.10 2.48 6.69 22.50 0.15 2.63 16 20 C -0.22 -5.10 9.04 22.36 0.20 -4.89 16 21 C -0.09 -1.75 9.69 22.26 0.22 -1.53 16 22 C -0.13 -2.18 5.88 -19.85 -0.12 -2.30 16 23 C -0.11 -1.10 10.01 71.23 0.71 -0.38 16 24 C -0.08 -1.36 9.69 22.25 0.22 -1.15 16 25 C -0.16 -3.20 9.99 22.36 0.22 -2.98 16 26 H 0.05 1.89 5.64 -2.39 -0.01 1.88 16 27 H 0.04 1.60 7.87 -2.38 -0.02 1.58 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 2.23 4.43 -2.39 -0.01 2.22 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.26 15.63 8.72 -92.71 -0.81 14.82 16 32 H 0.40 13.40 8.53 -92.71 -0.79 12.61 16 33 H 0.12 2.48 8.14 -2.39 -0.02 2.47 16 34 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.06 1.67 7.61 -2.38 -0.02 1.66 16 36 H 0.07 1.74 7.63 -2.39 -0.02 1.72 16 37 H 0.13 2.97 6.30 -2.91 -0.02 2.96 16 38 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.64 8.08 -2.38 -0.02 0.62 16 41 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 42 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 43 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -66.98 346.94 3.07 -63.92 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.07 Total: 25.68 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 4.18 Total: -24.15 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -1.95 Total: -84.97 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.98 Total: -32.91 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 1.74 Total: 52.44 kcal Total: -66.98 3.07 -63.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706044839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.220 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds