Wall clock time and date at job start Tue Mar 31 2020 06:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46929 * 2 1 4 4 N 1.46900 * 109.46969 * 184.94415 * 3 2 1 5 5 C 1.46901 * 110.99869 * 160.31930 * 4 3 2 6 6 C 1.53001 * 109.47216 * 288.11700 * 5 4 3 7 7 C 1.46905 * 110.99815 * 284.27215 * 4 3 2 8 8 C 1.50694 * 109.47127 * 170.00392 * 7 4 3 9 9 C 1.38381 * 119.84326 * 270.25190 * 8 7 4 10 10 C 1.37936 * 120.15545 * 180.21183 * 9 8 7 11 11 C 1.39668 * 119.84066 * 359.51492 * 10 9 8 12 12 C 1.47660 * 120.15247 * 180.27801 * 11 10 9 13 13 O 1.21509 * 119.99989 * 359.97438 * 12 11 10 14 14 O 1.34737 * 119.99891 * 179.97438 * 12 11 10 15 15 C 1.34855 * 116.99679 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00082 * 0.02562 * 15 14 12 17 17 C 1.38815 * 119.99769 * 179.97438 * 15 14 12 18 18 N 1.31415 * 119.99984 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99939 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46986 * 60.00609 * 19 17 15 21 21 H 1.48500 * 109.47002 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47117 * 300.00527 * 19 17 15 23 23 C 1.39674 * 119.69706 * 0.25131 * 11 10 9 24 24 C 1.37933 * 119.83876 * 0.02562 * 23 11 10 25 25 H 1.09004 * 109.47378 * 299.99839 * 1 2 3 26 26 H 1.08995 * 109.47431 * 60.00635 * 1 2 3 27 27 H 1.09004 * 109.47168 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47437 * 239.99804 * 2 1 3 29 29 H 1.09004 * 109.47195 * 119.99180 * 2 1 3 30 30 H 1.08994 * 109.47412 * 64.93893 * 3 2 1 31 31 H 1.09003 * 109.47014 * 304.93766 * 3 2 1 32 32 H 1.09003 * 109.46808 * 48.11973 * 5 4 3 33 33 H 1.09006 * 109.46848 * 168.11349 * 5 4 3 34 34 H 1.09004 * 109.46781 * 299.31683 * 6 5 4 35 35 H 1.08998 * 109.47011 * 59.31290 * 6 5 4 36 36 H 1.08997 * 109.46775 * 179.32014 * 6 5 4 37 37 H 1.09000 * 109.47049 * 49.99843 * 7 4 3 38 38 H 1.09001 * 109.47229 * 290.00261 * 7 4 3 39 39 H 1.08004 * 119.92426 * 359.97438 * 9 8 7 40 40 H 1.07996 * 120.08195 * 179.79329 * 10 9 8 41 41 H 0.96998 * 120.00029 * 179.97438 * 18 17 15 42 42 H 1.07992 * 120.08083 * 180.02562 * 23 11 10 43 43 H 1.07998 * 119.92262 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5041 1.4443 -0.1194 5 6 3.9927 2.7490 -0.5852 6 6 3.6354 2.9299 -2.0618 7 6 4.1364 1.0688 1.1524 8 6 5.6100 0.8422 0.9331 9 6 6.0698 -0.4176 0.5919 10 6 7.4177 -0.6331 0.3939 11 6 8.3181 0.4261 0.5287 12 6 9.7618 0.2044 0.3123 13 8 10.1691 -0.9016 0.0168 14 8 10.6276 1.2286 0.4427 15 6 11.9318 0.9582 0.2320 16 1 12.2404 -0.0434 -0.0287 17 6 12.8776 1.9675 0.3492 18 7 12.5020 3.1863 0.6660 19 14 14.6842 1.5932 0.0567 20 1 14.8674 1.0891 -1.3281 21 1 15.4827 2.8313 0.2429 22 1 15.1387 0.5615 1.0232 23 6 7.8465 1.6961 0.8685 24 6 6.4965 1.8960 1.0691 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.7507 1.9302 0.9308 31 1 1.6062 1.9813 -0.8425 32 1 3.5276 3.5415 0.0010 33 1 5.0751 2.7956 -0.4649 34 1 4.1105 2.1443 -2.6495 35 1 2.5538 2.8710 -2.1837 36 1 3.9873 3.9030 -2.4042 37 1 3.6800 0.1532 1.5286 38 1 3.9960 1.8696 1.8784 39 1 5.3720 -1.2348 0.4841 40 1 7.7756 -1.6175 0.1309 41 1 13.1629 3.8915 0.7483 42 1 8.5371 2.5196 0.9740 43 1 6.1304 2.8773 1.3324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741335481.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:43 Heat of formation + Delta-G solvation = -62.750740 kcal Electronic energy + Delta-G solvation = -22662.322661 eV Core-core repulsion = 19286.445624 eV Total energy + Delta-G solvation = -3375.877037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.69826 -38.75056 -37.48721 -35.12601 -33.80627 -32.30576 -32.00829 -30.63162 -30.01584 -26.96757 -25.54924 -24.75789 -22.54135 -22.26335 -21.77330 -20.52759 -19.94801 -17.73974 -17.18158 -16.30121 -15.88950 -15.28170 -15.15666 -14.83663 -14.48568 -14.47856 -14.34689 -14.10077 -13.70714 -13.53384 -13.13795 -12.89029 -12.48570 -12.32039 -12.26433 -12.02712 -11.76434 -11.72953 -11.61827 -11.27506 -11.20646 -11.15930 -10.80086 -10.70944 -10.60184 -10.48027 -10.43211 -9.84875 -9.06553 -8.63512 -8.61699 -8.54359 -8.32521 -6.46604 -4.09159 1.23314 1.74617 3.13717 3.17403 3.21549 3.41743 3.87063 3.92522 4.40630 4.56135 4.66571 4.76264 4.81868 4.97040 5.00677 5.10607 5.14568 5.23862 5.26505 5.28232 5.34761 5.39506 5.46325 5.55993 5.58139 5.73968 5.77454 5.79875 5.90267 5.90963 5.96266 6.08354 6.13722 6.15914 6.29290 6.45817 6.76430 6.79875 6.93303 6.98325 7.07061 7.25171 7.37339 7.91588 8.69987 9.02215 9.83114 10.71138 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031419 B = 0.002936 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.979173 B = 9533.967056 C =10005.190231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.052 3.948 4 N -0.533 5.533 5 C 0.040 3.960 6 C -0.146 4.146 7 C 0.095 3.905 8 C -0.071 4.071 9 C -0.111 4.111 10 C -0.072 4.072 11 C -0.085 4.085 12 C 0.431 3.569 13 O -0.555 6.555 14 O -0.205 6.205 15 C -0.375 4.375 16 H 0.097 0.903 17 C 0.041 3.959 18 N -0.860 5.860 19 Si 0.946 3.054 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.072 4.072 24 C -0.128 4.128 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.271 0.729 42 H 0.140 0.860 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.508 -0.439 -0.042 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.075 4.075 4 N -0.257 5.257 5 C -0.087 4.087 6 C -0.203 4.203 7 C -0.032 4.032 8 C -0.072 4.072 9 C -0.130 4.130 10 C -0.090 4.090 11 C -0.086 4.086 12 C 0.279 3.721 13 O -0.454 6.454 14 O -0.112 6.112 15 C -0.451 4.451 16 H 0.115 0.885 17 C -0.163 4.163 18 N -0.496 5.496 19 Si 0.770 3.230 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.194 1.194 23 C -0.090 4.090 24 C -0.147 4.147 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.141 0.859 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.158 0.842 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.160 -0.812 -0.427 21.180 hybrid contribution 0.687 0.515 0.476 0.982 sum -20.473 -0.298 0.049 20.475 Atomic orbital electron populations 1.21741 0.95863 1.01701 1.01585 1.21521 0.95017 0.96510 1.02793 1.22212 0.87557 0.97315 1.00466 1.62032 1.05208 1.29841 1.28632 1.22252 1.01769 0.88693 0.96005 1.21768 1.01058 1.01718 0.95784 1.21070 0.91160 1.00825 0.90181 1.19761 0.94285 0.93792 0.99367 1.20797 0.94785 0.96626 1.00764 1.21222 0.92240 0.98831 0.96715 1.19438 0.91376 0.94579 1.03236 1.20820 0.87055 0.83940 0.80269 1.90617 1.79566 1.25646 1.49525 1.83892 1.18288 1.36239 1.72743 1.21263 0.78313 0.97703 1.47785 0.88545 1.25379 1.00334 0.94417 0.96211 1.69964 1.35258 1.00813 1.43596 0.85705 0.79886 0.77958 0.79437 1.19373 1.20316 1.19388 1.21574 0.95460 0.96959 0.95056 1.20943 0.93052 0.98302 1.02382 0.93001 0.92782 0.92589 0.90980 0.92111 0.94910 0.90675 0.95101 0.89517 0.91767 0.93090 0.92375 0.89848 0.94049 0.85870 0.85000 0.91873 0.84185 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.94 5.97 -26.73 -0.16 -1.10 16 3 C 0.05 0.45 4.83 -3.82 -0.02 0.43 16 4 N -0.53 -5.60 4.38 -236.06 -1.03 -6.64 16 5 C 0.04 0.43 5.52 -3.82 -0.02 0.40 16 6 C -0.15 -1.41 9.99 37.16 0.37 -1.04 16 7 C 0.09 1.02 4.94 -4.98 -0.02 0.99 16 8 C -0.07 -0.97 4.94 -104.52 -0.52 -1.48 16 9 C -0.11 -1.61 9.68 -39.64 -0.38 -1.99 16 10 C -0.07 -1.28 9.60 -39.16 -0.38 -1.65 16 11 C -0.08 -1.77 5.87 -104.98 -0.62 -2.39 16 12 C 0.43 11.30 7.84 34.58 0.27 11.57 16 13 O -0.55 -15.61 15.59 -19.27 -0.30 -15.91 16 14 O -0.20 -5.97 8.99 -21.66 -0.19 -6.17 16 15 C -0.37 -11.18 9.65 30.95 0.30 -10.88 16 16 H 0.10 2.89 6.86 -52.49 -0.36 2.53 16 17 C 0.04 1.16 5.50 -17.52 -0.10 1.06 16 18 N -0.86 -24.96 13.67 55.49 0.76 -24.20 16 19 Si 0.95 21.27 29.55 -169.99 -5.02 16.25 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 C -0.07 -1.34 9.62 -39.16 -0.38 -1.71 16 24 C -0.13 -1.89 7.82 -39.64 -0.31 -2.20 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.48 6.95 -51.93 -0.36 0.12 16 30 H 0.03 0.27 8.00 -51.93 -0.42 -0.14 16 31 H 0.07 0.61 6.23 -51.93 -0.32 0.29 16 32 H 0.03 0.30 8.05 -51.93 -0.42 -0.12 16 33 H 0.09 1.05 5.13 -51.93 -0.27 0.78 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.44 6.51 -51.93 -0.34 0.10 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.81 6.65 -51.93 -0.35 0.46 16 38 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 39 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.13 2.34 7.65 -52.49 -0.40 1.94 16 41 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.14 2.76 7.61 -52.49 -0.40 2.37 16 43 H 0.12 1.49 7.73 -52.49 -0.41 1.08 16 LS Contribution 355.83 15.07 5.36 5.36 Total: -1.00 -32.32 355.83 -8.57 -40.89 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.55 Total: 1.02 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.59 Total: -10.60 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: -0.28 Total: -30.84 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.50 Total: -22.08 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.32 -8.57 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741335481.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.864 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds