Wall clock time and date at job start Tue Mar 31 2020 06:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46929 * 2 1 4 4 N 1.46900 * 109.46969 * 184.94415 * 3 2 1 5 5 C 1.46901 * 110.99869 * 160.31930 * 4 3 2 6 6 C 1.53001 * 109.47216 * 288.11700 * 5 4 3 7 7 C 1.46905 * 110.99815 * 284.27215 * 4 3 2 8 8 C 1.50694 * 109.47127 * 170.00392 * 7 4 3 9 9 C 1.38381 * 119.84326 * 270.25190 * 8 7 4 10 10 C 1.37936 * 120.15545 * 180.21183 * 9 8 7 11 11 C 1.39668 * 119.84066 * 359.51492 * 10 9 8 12 12 C 1.47660 * 120.15247 * 180.27801 * 11 10 9 13 13 O 1.21509 * 119.99989 * 359.97438 * 12 11 10 14 14 O 1.34737 * 119.99891 * 179.97438 * 12 11 10 15 15 C 1.34855 * 116.99679 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00082 * 0.02562 * 15 14 12 17 17 C 1.38815 * 119.99769 * 179.97438 * 15 14 12 18 18 N 1.31415 * 119.99984 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99939 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46986 * 60.00609 * 19 17 15 21 21 H 1.48500 * 109.47002 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47117 * 300.00527 * 19 17 15 23 23 C 1.39674 * 119.69706 * 0.25131 * 11 10 9 24 24 C 1.37933 * 119.83876 * 0.02562 * 23 11 10 25 25 H 1.09004 * 109.47378 * 299.99839 * 1 2 3 26 26 H 1.08995 * 109.47431 * 60.00635 * 1 2 3 27 27 H 1.09004 * 109.47168 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47437 * 239.99804 * 2 1 3 29 29 H 1.09004 * 109.47195 * 119.99180 * 2 1 3 30 30 H 1.08994 * 109.47412 * 64.93893 * 3 2 1 31 31 H 1.09003 * 109.47014 * 304.93766 * 3 2 1 32 32 H 1.09003 * 109.46808 * 48.11973 * 5 4 3 33 33 H 1.09006 * 109.46848 * 168.11349 * 5 4 3 34 34 H 1.09004 * 109.46781 * 299.31683 * 6 5 4 35 35 H 1.08998 * 109.47011 * 59.31290 * 6 5 4 36 36 H 1.08997 * 109.46775 * 179.32014 * 6 5 4 37 37 H 1.09000 * 109.47049 * 49.99843 * 7 4 3 38 38 H 1.09001 * 109.47229 * 290.00261 * 7 4 3 39 39 H 1.08004 * 119.92426 * 359.97438 * 9 8 7 40 40 H 1.07996 * 120.08195 * 179.79329 * 10 9 8 41 41 H 0.96998 * 120.00029 * 179.97438 * 18 17 15 42 42 H 1.07992 * 120.08083 * 180.02562 * 23 11 10 43 43 H 1.07998 * 119.92262 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5041 1.4443 -0.1194 5 6 3.9927 2.7490 -0.5852 6 6 3.6354 2.9299 -2.0618 7 6 4.1364 1.0688 1.1524 8 6 5.6100 0.8422 0.9331 9 6 6.0698 -0.4176 0.5919 10 6 7.4177 -0.6331 0.3939 11 6 8.3181 0.4261 0.5287 12 6 9.7618 0.2044 0.3123 13 8 10.1691 -0.9016 0.0168 14 8 10.6276 1.2286 0.4427 15 6 11.9318 0.9582 0.2320 16 1 12.2404 -0.0434 -0.0287 17 6 12.8776 1.9675 0.3492 18 7 12.5020 3.1863 0.6660 19 14 14.6842 1.5932 0.0567 20 1 14.8674 1.0891 -1.3281 21 1 15.4827 2.8313 0.2429 22 1 15.1387 0.5615 1.0232 23 6 7.8465 1.6961 0.8685 24 6 6.4965 1.8960 1.0691 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.7507 1.9302 0.9308 31 1 1.6062 1.9813 -0.8425 32 1 3.5276 3.5415 0.0010 33 1 5.0751 2.7956 -0.4649 34 1 4.1105 2.1443 -2.6495 35 1 2.5538 2.8710 -2.1837 36 1 3.9873 3.9030 -2.4042 37 1 3.6800 0.1532 1.5286 38 1 3.9960 1.8696 1.8784 39 1 5.3720 -1.2348 0.4841 40 1 7.7756 -1.6175 0.1309 41 1 13.1629 3.8915 0.7483 42 1 8.5371 2.5196 0.9740 43 1 6.1304 2.8773 1.3324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741335481.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:43 Heat of formation + Delta-G solvation = -81.549959 kcal Electronic energy + Delta-G solvation = -22663.137857 eV Core-core repulsion = 19286.445624 eV Total energy + Delta-G solvation = -3376.692232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.33333 -40.26967 -38.60448 -37.24138 -34.52040 -34.35782 -33.24137 -31.97759 -30.97126 -28.25208 -27.16632 -25.81251 -23.86508 -23.67016 -22.48867 -21.72409 -21.20929 -19.92380 -19.00377 -17.50419 -16.96338 -16.68702 -16.56032 -16.45152 -16.05249 -15.70170 -15.48593 -15.31777 -15.00701 -14.48511 -14.27092 -14.12827 -13.84228 -13.63962 -13.45251 -13.09884 -13.02339 -12.82863 -12.60381 -12.47110 -12.40977 -12.22239 -12.19784 -12.14413 -11.91252 -11.86528 -11.54749 -11.31723 -11.14702 -10.74598 -9.93879 -9.85441 -9.21282 -8.59814 -6.37245 -0.23576 0.41376 1.31999 1.36886 1.48453 1.75178 2.08327 2.67988 2.70639 2.98181 3.16628 3.73459 3.83589 4.02378 4.03496 4.15875 4.21908 4.27312 4.39378 4.44070 4.53273 4.59930 4.63442 4.67997 4.70486 4.75345 4.84185 4.89361 4.98773 5.05289 5.06084 5.09755 5.15045 5.28443 5.34598 5.37235 5.38138 5.51084 5.51701 5.54725 5.77073 5.91516 6.14018 6.22456 6.56202 6.84307 7.68685 8.60637 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031419 B = 0.002936 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.979173 B = 9533.967056 C =10005.190231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.054 3.946 4 N -0.543 5.543 5 C 0.038 3.962 6 C -0.143 4.143 7 C 0.096 3.904 8 C -0.048 4.048 9 C -0.100 4.100 10 C -0.073 4.073 11 C -0.125 4.125 12 C 0.429 3.571 13 O -0.584 6.584 14 O -0.232 6.232 15 C -0.423 4.423 16 H 0.082 0.918 17 C -0.002 4.002 18 N -0.897 5.897 19 Si 1.020 2.980 20 H -0.261 1.261 21 H -0.256 1.256 22 H -0.261 1.261 23 C -0.079 4.079 24 C -0.117 4.117 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.159 0.841 40 H 0.127 0.873 41 H 0.281 0.719 42 H 0.117 0.883 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.988 -0.223 0.372 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.073 4.073 4 N -0.268 5.268 5 C -0.089 4.089 6 C -0.200 4.200 7 C -0.031 4.031 8 C -0.048 4.048 9 C -0.118 4.118 10 C -0.091 4.091 11 C -0.126 4.126 12 C 0.280 3.720 13 O -0.484 6.484 14 O -0.139 6.139 15 C -0.498 4.498 16 H 0.100 0.900 17 C -0.203 4.203 18 N -0.533 5.533 19 Si 0.838 3.162 20 H -0.186 1.186 21 H -0.180 1.180 22 H -0.185 1.185 23 C -0.098 4.098 24 C -0.135 4.135 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.177 0.823 40 H 0.145 0.855 41 H 0.091 0.909 42 H 0.135 0.865 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -23.679 -0.590 -0.010 23.686 hybrid contribution 1.171 0.432 0.353 1.297 sum -22.507 -0.159 0.343 22.510 Atomic orbital electron populations 1.21716 0.94878 1.02082 1.01965 1.21495 0.95858 0.95899 1.02335 1.22252 0.86032 0.97911 1.01091 1.62015 1.06522 1.29886 1.28367 1.22249 1.00728 0.89302 0.96651 1.21739 1.01755 1.01416 0.95139 1.21123 0.88653 1.02477 0.90807 1.20191 0.96098 0.92756 0.95804 1.21143 0.93479 0.98163 0.98977 1.21292 0.93365 0.97699 0.96792 1.19316 0.88525 0.96933 1.07819 1.21910 0.88978 0.83051 0.78094 1.90557 1.80656 1.26556 1.50637 1.83919 1.18553 1.37455 1.74021 1.21477 0.79348 0.97982 1.51042 0.90045 1.26611 1.05219 0.93785 0.94713 1.70046 1.37456 1.01836 1.43986 0.84657 0.73068 0.78764 0.79671 1.18551 1.17997 1.18527 1.21441 0.97024 0.95350 0.95980 1.21183 0.91207 1.00155 1.00928 0.92449 0.92588 0.92267 0.92076 0.91896 0.94023 0.90289 0.93816 0.91331 0.93379 0.91816 0.91877 0.87913 0.92552 0.82337 0.85534 0.90917 0.86476 0.83332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.45 5.97 30.60 0.18 -1.27 16 3 C 0.05 0.72 4.83 86.30 0.42 1.14 16 4 N -0.54 -9.49 4.38 -900.77 -3.95 -13.44 16 5 C 0.04 0.70 5.52 86.30 0.48 1.18 16 6 C -0.14 -2.47 9.99 71.98 0.72 -1.75 16 7 C 0.10 1.66 4.94 85.55 0.42 2.08 16 8 C -0.05 -1.15 4.94 -19.80 -0.10 -1.25 16 9 C -0.10 -2.62 9.68 22.23 0.22 -2.41 16 10 C -0.07 -2.61 9.60 22.54 0.22 -2.39 16 11 C -0.12 -5.44 5.87 -20.10 -0.12 -5.56 16 12 C 0.43 24.05 7.84 70.31 0.55 24.60 16 13 O -0.58 -34.94 15.59 19.81 0.31 -34.63 16 14 O -0.23 -14.46 8.99 11.29 0.10 -14.36 16 15 C -0.42 -26.73 9.65 67.96 0.66 -26.07 16 16 H 0.08 5.21 6.86 -2.91 -0.02 5.19 16 17 C 0.00 -0.14 5.50 84.89 0.47 0.33 16 18 N -0.90 -53.62 13.67 21.64 0.30 -53.33 16 19 Si 1.02 44.19 29.55 68.60 2.03 46.21 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 23 C -0.08 -3.03 9.62 22.54 0.22 -2.81 16 24 C -0.12 -3.25 7.82 22.23 0.17 -3.08 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.75 6.95 -2.39 -0.02 0.73 16 30 H 0.04 0.51 8.00 -2.39 -0.02 0.49 16 31 H 0.08 1.01 6.23 -2.39 -0.01 1.00 16 32 H 0.04 0.70 8.05 -2.39 -0.02 0.68 16 33 H 0.07 1.50 5.13 -2.38 -0.01 1.49 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.06 0.93 6.51 -2.39 -0.02 0.91 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.46 6.65 -2.39 -0.02 1.44 16 38 H 0.06 0.87 8.06 -2.39 -0.02 0.85 16 39 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.13 4.58 7.65 -2.91 -0.02 4.56 16 41 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.12 4.96 7.61 -2.91 -0.02 4.93 16 43 H 0.15 3.30 7.73 -2.91 -0.02 3.27 16 Total: -1.00 -74.89 355.83 4.99 -69.90 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.99 Total: 17.64 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 5.21 Total: -18.01 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -3.65 Total: -66.76 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: 0.41 Total: -48.98 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -74.89 4.99 -69.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741335481.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.649 kcal (2) G-P(sol) polarization free energy of solvation -74.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds