Wall clock time and date at job start Tue Mar 31 2020 06:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46669 * 2 1 4 4 H 1.08999 * 109.47258 * 54.70915 * 3 2 1 5 5 N 1.46500 * 109.47070 * 294.70751 * 3 2 1 6 6 C 1.39681 * 119.99871 * 153.19754 * 5 3 2 7 7 C 1.38907 * 120.07364 * 6.10306 * 6 5 3 8 8 C 1.38102 * 119.92150 * 179.77012 * 7 6 5 9 9 C 1.38291 * 120.07816 * 0.51507 * 8 7 6 10 10 C 1.38285 * 120.14611 * 359.73918 * 9 8 7 11 11 C 1.38106 * 120.07498 * 0.02562 * 10 9 8 12 12 C 1.50706 * 109.47054 * 174.70969 * 3 2 1 13 13 O 1.20828 * 119.99985 * 119.99953 * 12 3 2 14 14 O 1.34230 * 119.99892 * 299.99903 * 12 3 2 15 15 C 1.45194 * 116.99927 * 179.97438 * 14 12 3 16 16 C 1.53002 * 109.47153 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47169 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47257 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00085 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99826 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47074 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46924 * 119.99438 * 22 20 18 25 25 H 1.48497 * 109.47257 * 240.00117 * 22 20 18 26 26 H 1.08998 * 109.47062 * 175.26479 * 1 2 3 27 27 H 1.09001 * 109.47133 * 295.26114 * 1 2 3 28 28 H 1.08998 * 109.47136 * 55.26738 * 1 2 3 29 29 H 1.08996 * 109.47141 * 240.00319 * 2 1 3 30 30 H 1.08998 * 109.47189 * 119.99794 * 2 1 3 31 31 H 0.96999 * 120.00353 * 333.19401 * 5 3 2 32 32 H 1.07998 * 120.03867 * 0.02562 * 7 6 5 33 33 H 1.08002 * 119.96609 * 180.25635 * 8 7 6 34 34 H 1.07993 * 119.92627 * 179.72037 * 9 8 7 35 35 H 1.07998 * 119.96688 * 179.97438 * 10 9 8 36 36 H 1.08000 * 120.03671 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.47549 * 300.00438 * 15 14 12 38 38 H 1.09002 * 109.47237 * 60.00050 * 15 14 12 39 39 H 1.08998 * 109.46774 * 300.00351 * 16 15 14 40 40 H 1.08999 * 109.47204 * 60.00401 * 16 15 14 41 41 H 1.09007 * 109.46921 * 299.99618 * 17 16 15 42 42 H 1.09002 * 109.47620 * 59.99791 * 17 16 15 43 43 H 0.96999 * 120.00030 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6012 1.9830 0.8388 5 7 1.6583 2.0953 -1.2548 6 6 1.4903 3.4813 -1.2980 7 6 1.8064 4.2557 -0.1890 8 6 1.6436 5.6263 -0.2368 9 6 1.1563 6.2268 -1.3833 10 6 0.8357 5.4582 -2.4872 11 6 1.0007 4.0876 -2.4479 12 6 3.5413 1.4447 0.1310 13 8 4.2226 1.9406 -0.7349 14 8 4.1216 0.8956 1.2097 15 6 5.5718 0.9331 1.2688 16 6 6.0471 0.2644 2.5603 17 6 7.5753 0.3045 2.6228 18 6 8.0435 -0.3546 3.8946 19 1 7.3230 -0.7610 4.5891 20 6 9.3914 -0.4378 4.1722 21 7 10.2687 0.0575 3.3268 22 14 9.9717 -1.2542 5.7490 23 1 8.7960 -1.7268 6.5234 24 1 10.8419 -2.4107 5.4164 25 1 10.7383 -0.2749 6.5604 26 1 -0.3633 -1.0241 -0.0848 27 1 -0.3633 0.4386 0.9294 28 1 -0.3633 0.5855 -0.8445 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5224 1.5651 -2.0556 32 1 2.1830 3.7870 0.7081 33 1 1.8930 6.2295 0.6236 34 1 1.0257 7.2983 -1.4164 35 1 0.4550 5.9302 -3.3809 36 1 0.7497 3.4879 -3.3103 37 1 5.9843 0.4010 0.4115 38 1 5.9096 1.9693 1.2500 39 1 5.6346 0.7962 3.4177 40 1 5.7095 -0.7718 2.5785 41 1 7.9881 -0.2271 1.7653 42 1 7.9127 1.3408 2.6048 43 1 11.2170 -0.0014 3.5219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767341801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:17 Heat of formation + Delta-G solvation = -79.410208 kcal Electronic energy + Delta-G solvation = -22473.232953 eV Core-core repulsion = 19096.633507 eV Total energy + Delta-G solvation = -3376.599446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61727 -39.30639 -37.01607 -36.01299 -34.02029 -33.17895 -31.70140 -31.01954 -29.27211 -27.75469 -26.53344 -23.43828 -23.15282 -22.13512 -21.91693 -20.48176 -20.17923 -18.00263 -17.48483 -16.77523 -16.33890 -16.21756 -16.06620 -15.59058 -14.75279 -14.47931 -14.25287 -13.96409 -13.73198 -13.56505 -13.48734 -13.25038 -12.78311 -12.40665 -12.16507 -12.09102 -11.83962 -11.66958 -11.44598 -11.32770 -11.01606 -10.99478 -10.87119 -10.65933 -10.60223 -10.39315 -10.08539 -9.73999 -9.50112 -9.16163 -9.03475 -8.40487 -7.65770 -6.04819 -4.07949 1.32701 1.47888 2.29192 2.66870 3.25202 3.29038 3.36511 3.40726 3.81043 4.35586 4.42278 4.57722 4.69839 4.82057 4.85288 4.98980 5.10047 5.18885 5.31223 5.33239 5.33534 5.41475 5.56083 5.56470 5.62024 5.64079 5.72980 5.88855 5.91735 5.99796 6.14211 6.36219 6.47855 6.52191 6.52395 6.65639 6.83686 6.96824 7.08438 7.44506 7.59023 7.69685 7.92469 7.94180 8.34515 8.98599 9.56497 11.06689 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022069 B = 0.002738 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.461222 B =10224.812843 C =10982.968114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.164 3.836 4 H 0.117 0.883 5 N -0.722 5.722 6 C 0.221 3.779 7 C -0.192 4.192 8 C -0.072 4.072 9 C -0.179 4.179 10 C -0.075 4.075 11 C -0.191 4.191 12 C 0.431 3.569 13 O -0.497 6.497 14 O -0.358 6.358 15 C 0.068 3.932 16 C -0.108 4.108 17 C 0.023 3.977 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.404 0.596 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.340 5.839 -10.023 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.056 3.944 4 H 0.135 0.865 5 N -0.352 5.352 6 C 0.119 3.881 7 C -0.214 4.214 8 C -0.090 4.090 9 C -0.199 4.199 10 C -0.094 4.094 11 C -0.213 4.213 12 C 0.271 3.729 13 O -0.384 6.384 14 O -0.274 6.274 15 C -0.005 4.005 16 C -0.145 4.145 17 C -0.014 4.014 18 C -0.559 4.559 19 H 0.076 0.924 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.240 0.760 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.852 5.941 -10.110 25.685 hybrid contribution 0.809 -0.531 0.402 1.048 sum -22.043 5.410 -9.707 24.686 Atomic orbital electron populations 1.21755 0.94099 1.02231 1.02549 1.21772 0.97325 0.92771 1.04626 1.20496 0.87503 0.96691 0.89744 0.86545 1.44329 1.75806 1.03999 1.11099 1.17769 0.92985 0.83234 0.94117 1.20672 1.08092 0.94280 0.98399 1.20911 0.96393 0.93898 0.97843 1.20908 1.05157 0.99645 0.94177 1.20855 0.97550 0.93044 0.97947 1.20541 1.08007 0.95309 0.97472 1.24560 0.92736 0.75433 0.80213 1.90672 1.65270 1.41609 1.40843 1.86495 1.26109 1.72077 1.42767 1.23492 0.73903 1.01891 1.01196 1.21756 1.00012 0.99617 0.93164 1.19058 0.86993 0.97690 0.97633 1.21206 0.91835 1.37735 1.05121 0.92368 1.25037 0.96914 0.95604 0.96959 1.69974 1.01592 1.45790 1.35990 0.86492 0.78767 0.79159 0.83334 1.19658 1.20970 1.20953 0.91994 0.92184 0.92223 0.90840 0.88593 0.75973 0.86654 0.86161 0.86521 0.86269 0.86315 0.91673 0.91636 0.92146 0.92155 0.96282 0.96254 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.86 37.16 0.37 -0.59 16 2 C -0.13 -1.03 5.45 -26.73 -0.15 -1.18 16 3 C 0.16 1.71 2.16 -69.08 -0.15 1.56 16 4 H 0.12 1.10 6.66 -51.93 -0.35 0.76 16 5 N -0.72 -7.25 4.11 -53.29 -0.22 -7.47 16 6 C 0.22 2.50 6.62 -83.78 -0.55 1.95 16 7 C -0.19 -2.29 9.09 -39.38 -0.36 -2.65 16 8 C -0.07 -0.78 10.04 -39.61 -0.40 -1.17 16 9 C -0.18 -1.77 10.04 -39.54 -0.40 -2.17 16 10 C -0.08 -0.72 10.04 -39.61 -0.40 -1.12 16 11 C -0.19 -1.93 9.90 -39.38 -0.39 -2.32 16 12 C 0.43 6.44 6.99 36.01 0.25 6.69 16 13 O -0.50 -9.09 16.16 -18.75 -0.30 -9.39 16 14 O -0.36 -5.83 10.02 -39.26 -0.39 -6.23 16 15 C 0.07 1.27 5.47 37.16 0.20 1.47 16 16 C -0.11 -2.23 5.53 -26.73 -0.15 -2.38 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.37 7.64 -51.93 -0.40 -0.02 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.82 7.99 -51.93 -0.41 0.40 16 31 H 0.40 3.42 8.64 -40.82 -0.35 3.07 16 32 H 0.12 1.37 6.19 -52.49 -0.33 1.05 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 38 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -32.54 363.82 -9.26 -41.79 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.87 Total: 0.37 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.67 Total: -14.91 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.52 Total: -33.64 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.70 Total: -15.62 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.54 -9.26 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767341801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.616 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds