Wall clock time and date at job start Tue Mar 31 2020 06:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46669 * 2 1 4 4 H 1.08999 * 109.47258 * 54.70915 * 3 2 1 5 5 N 1.46500 * 109.47070 * 294.70751 * 3 2 1 6 6 C 1.39681 * 119.99871 * 153.19754 * 5 3 2 7 7 C 1.38907 * 120.07364 * 6.10306 * 6 5 3 8 8 C 1.38102 * 119.92150 * 179.77012 * 7 6 5 9 9 C 1.38291 * 120.07816 * 0.51507 * 8 7 6 10 10 C 1.38285 * 120.14611 * 359.73918 * 9 8 7 11 11 C 1.38106 * 120.07498 * 0.02562 * 10 9 8 12 12 C 1.50706 * 109.47054 * 174.70969 * 3 2 1 13 13 O 1.20828 * 119.99985 * 119.99953 * 12 3 2 14 14 O 1.34230 * 119.99892 * 299.99903 * 12 3 2 15 15 C 1.45194 * 116.99927 * 179.97438 * 14 12 3 16 16 C 1.53002 * 109.47153 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47169 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47257 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00085 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99826 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47074 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46924 * 119.99438 * 22 20 18 25 25 H 1.48497 * 109.47257 * 240.00117 * 22 20 18 26 26 H 1.08998 * 109.47062 * 175.26479 * 1 2 3 27 27 H 1.09001 * 109.47133 * 295.26114 * 1 2 3 28 28 H 1.08998 * 109.47136 * 55.26738 * 1 2 3 29 29 H 1.08996 * 109.47141 * 240.00319 * 2 1 3 30 30 H 1.08998 * 109.47189 * 119.99794 * 2 1 3 31 31 H 0.96999 * 120.00353 * 333.19401 * 5 3 2 32 32 H 1.07998 * 120.03867 * 0.02562 * 7 6 5 33 33 H 1.08002 * 119.96609 * 180.25635 * 8 7 6 34 34 H 1.07993 * 119.92627 * 179.72037 * 9 8 7 35 35 H 1.07998 * 119.96688 * 179.97438 * 10 9 8 36 36 H 1.08000 * 120.03671 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.47549 * 300.00438 * 15 14 12 38 38 H 1.09002 * 109.47237 * 60.00050 * 15 14 12 39 39 H 1.08998 * 109.46774 * 300.00351 * 16 15 14 40 40 H 1.08999 * 109.47204 * 60.00401 * 16 15 14 41 41 H 1.09007 * 109.46921 * 299.99618 * 17 16 15 42 42 H 1.09002 * 109.47620 * 59.99791 * 17 16 15 43 43 H 0.96999 * 120.00030 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6012 1.9830 0.8388 5 7 1.6583 2.0953 -1.2548 6 6 1.4903 3.4813 -1.2980 7 6 1.8064 4.2557 -0.1890 8 6 1.6436 5.6263 -0.2368 9 6 1.1563 6.2268 -1.3833 10 6 0.8357 5.4582 -2.4872 11 6 1.0007 4.0876 -2.4479 12 6 3.5413 1.4447 0.1310 13 8 4.2226 1.9406 -0.7349 14 8 4.1216 0.8956 1.2097 15 6 5.5718 0.9331 1.2688 16 6 6.0471 0.2644 2.5603 17 6 7.5753 0.3045 2.6228 18 6 8.0435 -0.3546 3.8946 19 1 7.3230 -0.7610 4.5891 20 6 9.3914 -0.4378 4.1722 21 7 10.2687 0.0575 3.3268 22 14 9.9717 -1.2542 5.7490 23 1 8.7960 -1.7268 6.5234 24 1 10.8419 -2.4107 5.4164 25 1 10.7383 -0.2749 6.5604 26 1 -0.3633 -1.0241 -0.0848 27 1 -0.3633 0.4386 0.9294 28 1 -0.3633 0.5855 -0.8445 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5224 1.5651 -2.0556 32 1 2.1830 3.7870 0.7081 33 1 1.8930 6.2295 0.6236 34 1 1.0257 7.2983 -1.4164 35 1 0.4550 5.9302 -3.3809 36 1 0.7497 3.4879 -3.3103 37 1 5.9843 0.4010 0.4115 38 1 5.9096 1.9693 1.2500 39 1 5.6346 0.7962 3.4177 40 1 5.7095 -0.7718 2.5785 41 1 7.9881 -0.2271 1.7653 42 1 7.9127 1.3408 2.6048 43 1 11.2170 -0.0014 3.5219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767341801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:16 Heat of formation + Delta-G solvation = -96.521698 kcal Electronic energy + Delta-G solvation = -22473.974963 eV Core-core repulsion = 19096.633507 eV Total energy + Delta-G solvation = -3377.341456 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.79508 -40.20323 -38.13083 -37.12600 -35.96007 -33.98635 -33.59832 -31.79291 -30.07363 -29.24283 -27.82664 -25.22408 -23.88815 -23.05323 -22.84015 -22.19320 -21.31718 -19.00401 -18.62606 -18.45285 -17.69232 -17.56731 -17.00962 -16.57194 -16.42994 -15.77341 -15.29518 -14.93286 -14.91962 -14.43242 -14.28908 -14.20753 -13.98498 -13.91532 -13.82848 -13.40295 -13.04628 -12.85920 -12.51963 -12.38641 -12.37100 -12.15018 -12.08070 -11.96541 -11.89569 -11.73577 -11.61265 -11.44000 -11.28853 -10.96678 -10.59777 -9.82727 -8.47239 -8.23228 -6.35065 0.53355 0.66684 1.08645 1.40733 1.41134 1.52734 1.56278 2.36270 2.41169 3.00562 3.10742 3.49651 3.69329 3.83492 3.95773 4.03228 4.04937 4.11164 4.32138 4.36683 4.38814 4.48568 4.61684 4.65237 4.76023 4.76781 4.82228 4.85411 5.05615 5.09493 5.14335 5.15996 5.35138 5.39792 5.40705 5.50057 5.59977 5.61046 5.74520 5.78319 5.87699 6.17117 6.28509 6.66178 6.71862 6.81328 7.34767 8.89286 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022069 B = 0.002738 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.461222 B =10224.812843 C =10982.968114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C 0.174 3.826 4 H 0.129 0.871 5 N -0.716 5.716 6 C 0.204 3.796 7 C -0.216 4.216 8 C -0.086 4.086 9 C -0.185 4.185 10 C -0.079 4.079 11 C -0.197 4.197 12 C 0.430 3.570 13 O -0.533 6.533 14 O -0.354 6.354 15 C 0.078 3.922 16 C -0.092 4.092 17 C 0.025 3.975 18 C -0.541 4.541 19 H 0.067 0.933 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.259 1.259 24 H -0.278 1.278 25 H -0.279 1.279 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.412 0.588 32 H 0.107 0.893 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.070 0.930 41 H -0.005 1.005 42 H -0.006 1.006 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.271 5.428 -9.740 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C 0.065 3.935 4 H 0.146 0.854 5 N -0.347 5.347 6 C 0.103 3.897 7 C -0.239 4.239 8 C -0.104 4.104 9 C -0.205 4.205 10 C -0.097 4.097 11 C -0.219 4.219 12 C 0.271 3.729 13 O -0.422 6.422 14 O -0.270 6.270 15 C 0.005 3.995 16 C -0.129 4.129 17 C -0.012 4.012 18 C -0.579 4.579 19 H 0.085 0.915 20 C -0.200 4.200 21 N -0.575 5.575 22 Si 0.794 3.206 23 H -0.182 1.182 24 H -0.204 1.204 25 H -0.204 1.204 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.249 0.751 32 H 0.125 0.875 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.156 0.844 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.014 0.986 42 H 0.012 0.988 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.819 5.528 -9.836 27.264 hybrid contribution 1.379 -0.321 0.231 1.435 sum -23.440 5.207 -9.605 25.861 Atomic orbital electron populations 1.21717 0.92363 1.03077 1.02835 1.21782 0.98639 0.90800 1.04714 1.20656 0.83892 0.98512 0.90487 0.85374 1.44322 1.75280 1.03803 1.11345 1.17979 0.93551 0.83694 0.94514 1.20792 1.09331 0.95083 0.98650 1.21160 0.96632 0.93772 0.98861 1.21228 1.04518 1.00846 0.93907 1.21237 0.96770 0.92956 0.98751 1.20848 1.07495 0.95955 0.97608 1.25706 0.94437 0.73818 0.78900 1.90656 1.66424 1.43193 1.41939 1.86496 1.24310 1.72458 1.43730 1.23086 0.75702 1.00898 0.99860 1.21445 0.96432 1.00578 0.94485 1.18942 0.90535 0.95529 0.96187 1.21649 0.92471 1.37841 1.05958 0.91523 1.26035 0.97121 0.96158 1.00718 1.70110 1.02060 1.47110 1.38223 0.85324 0.78516 0.78044 0.78714 1.18223 1.20381 1.20422 0.90837 0.91910 0.91952 0.90555 0.88756 0.75080 0.87491 0.85132 0.84551 0.83693 0.84447 0.92270 0.92607 0.91407 0.91167 0.98630 0.98753 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.86 71.98 0.71 -0.79 16 2 C -0.12 -1.78 5.45 30.59 0.17 -1.61 16 3 C 0.17 3.46 2.16 44.25 0.10 3.55 16 4 H 0.13 2.31 6.66 -2.39 -0.02 2.29 16 5 N -0.72 -13.70 4.11 -322.50 -1.33 -15.02 16 6 C 0.20 4.47 6.62 38.21 0.25 4.72 16 7 C -0.22 -5.14 9.09 22.40 0.20 -4.93 16 8 C -0.09 -1.81 10.04 22.25 0.22 -1.59 16 9 C -0.19 -3.40 10.04 22.29 0.22 -3.18 16 10 C -0.08 -1.35 10.04 22.25 0.22 -1.12 16 11 C -0.20 -3.68 9.90 22.40 0.22 -3.46 16 12 C 0.43 12.82 6.99 71.24 0.50 13.32 16 13 O -0.53 -19.80 16.16 21.96 0.35 -19.45 16 14 O -0.35 -11.46 10.02 -51.42 -0.52 -11.97 16 15 C 0.08 2.97 5.47 71.98 0.39 3.37 16 16 C -0.09 -3.82 5.53 30.59 0.17 -3.65 16 17 C 0.03 1.34 4.97 29.85 0.15 1.49 16 18 C -0.54 -30.69 9.11 25.60 0.23 -30.46 16 19 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 20 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 21 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 22 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.64 7.64 -2.39 -0.02 0.62 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.45 7.99 -2.39 -0.02 1.43 16 31 H 0.41 6.42 8.64 -92.71 -0.80 5.62 16 32 H 0.11 2.60 6.19 -2.91 -0.02 2.58 16 33 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 34 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 37 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 38 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 39 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -70.47 363.82 5.24 -65.24 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.19 Total: 16.15 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 4.22 Total: -24.03 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.04 Total: -72.01 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.16 Total: -31.42 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -70.47 5.24 -65.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767341801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.283 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds