Wall clock time and date at job start Tue Mar 31 2020 06:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46834 * 2 1 4 4 H 1.09000 * 109.47774 * 305.00167 * 3 2 1 5 5 N 1.46507 * 109.47244 * 65.00040 * 3 2 1 6 6 C 1.39673 * 119.99644 * 274.99881 * 5 3 2 7 7 C 1.38918 * 120.07035 * 179.97438 * 6 5 3 8 8 C 1.38103 * 119.92232 * 180.27899 * 7 6 5 9 9 C 1.38289 * 120.07411 * 359.50929 * 8 7 6 10 10 C 1.38281 * 120.14983 * 0.47107 * 9 8 7 11 11 C 1.38102 * 120.07722 * 359.78374 * 10 9 8 12 12 C 1.50698 * 109.47226 * 184.99953 * 3 2 1 13 13 O 1.20833 * 120.00082 * 240.00080 * 12 3 2 14 14 O 1.34231 * 120.00167 * 60.00019 * 12 3 2 15 15 C 1.45198 * 117.00164 * 180.02562 * 14 12 3 16 16 C 1.53000 * 109.46941 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.46939 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47315 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99224 * 0.02562 * 18 17 16 20 20 C 1.37868 * 120.00329 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00209 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00175 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47063 * 59.99493 * 22 20 18 24 24 H 1.48499 * 109.47186 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46856 * 299.99544 * 22 20 18 26 26 H 1.09000 * 109.46689 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47119 * 300.00102 * 1 2 3 28 28 H 1.09003 * 109.47095 * 59.99989 * 1 2 3 29 29 H 1.08995 * 109.47323 * 240.00412 * 2 1 3 30 30 H 1.08997 * 109.47401 * 119.99685 * 2 1 3 31 31 H 0.97003 * 119.99776 * 95.00082 * 5 3 2 32 32 H 1.08002 * 120.03585 * 359.97438 * 7 6 5 33 33 H 1.07998 * 119.96426 * 179.72368 * 8 7 6 34 34 H 1.07993 * 119.92212 * 180.21091 * 9 8 7 35 35 H 1.07998 * 119.96120 * 179.76664 * 10 9 8 36 36 H 1.08001 * 120.04035 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.47484 * 300.00012 * 15 14 12 38 38 H 1.08995 * 109.47109 * 59.99774 * 15 14 12 39 39 H 1.09001 * 109.47415 * 299.99623 * 16 15 14 40 40 H 1.09000 * 109.47161 * 60.00499 * 16 15 14 41 41 H 1.08998 * 109.47328 * 299.99831 * 17 16 15 42 42 H 1.08995 * 109.47350 * 60.00430 * 17 16 15 43 43 H 0.97004 * 120.00545 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.3908 2.6850 1.3711 7 6 0.0215 3.3060 2.5576 8 6 -1.2288 3.8808 2.6741 9 6 -2.1089 3.8476 1.6080 10 6 -1.7443 3.2306 0.4254 11 6 -0.4975 2.6492 0.3038 12 6 3.5419 1.4444 -0.1238 13 8 4.2190 1.9419 0.7445 14 8 4.1274 0.8935 -1.1987 15 6 5.5780 0.9309 -1.2509 16 6 6.0594 0.2601 -2.5390 17 6 7.5879 0.3001 -2.5943 18 6 8.0621 -0.3601 -3.8634 19 1 7.3449 -0.7670 -4.5608 20 6 9.4113 -0.4445 -4.1339 21 7 10.2846 0.0514 -3.2848 22 14 9.9991 -1.2622 -5.7073 23 1 9.4428 -0.5387 -6.8788 24 1 11.4826 -1.2235 -5.7609 25 1 9.5390 -2.6739 -5.7332 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.2719 2.1232 1.9978 32 1 0.7096 3.3349 3.3896 33 1 -1.5183 4.3599 3.5977 34 1 -3.0847 4.3008 1.7006 35 1 -2.4355 3.2031 -0.4040 36 1 -0.2136 2.1671 -0.6200 37 1 5.9157 1.9671 -1.2324 38 1 5.9863 0.4003 -0.3909 39 1 5.7218 -0.7761 -2.5572 40 1 5.6511 0.7904 -3.3994 41 1 7.9251 1.3364 -2.5765 42 1 7.9966 -0.2299 -1.7341 43 1 11.2339 -0.0083 -3.4750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767341802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:20 Heat of formation + Delta-G solvation = -71.857196 kcal Electronic energy + Delta-G solvation = -22352.192332 eV Core-core repulsion = 18975.920409 eV Total energy + Delta-G solvation = -3376.271922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79790 -39.60502 -37.06567 -36.14393 -34.06708 -33.01282 -31.74963 -30.96415 -29.87881 -27.60989 -26.39702 -23.44286 -23.35351 -22.41067 -21.75021 -20.49595 -20.14318 -18.40334 -17.14988 -17.02874 -16.51620 -16.29205 -15.95459 -15.47145 -15.02979 -14.50567 -14.37416 -14.04087 -13.99257 -13.65163 -13.41427 -13.08642 -12.77167 -12.40978 -12.19571 -12.13515 -11.87097 -11.83627 -11.55707 -11.39836 -10.98993 -10.87005 -10.71878 -10.69468 -10.50772 -10.47135 -10.30439 -9.78600 -9.54758 -9.21612 -9.07271 -8.41681 -7.65005 -6.06421 -4.09873 1.24714 1.40878 2.11752 2.45260 3.26875 3.30384 3.34901 3.37333 3.71018 4.38919 4.48717 4.53756 4.62674 4.75186 4.82358 5.01625 5.04587 5.16467 5.28009 5.29425 5.33329 5.44408 5.49659 5.53176 5.54483 5.74761 5.78469 5.82623 5.93007 6.03762 6.09939 6.29396 6.36423 6.45084 6.47498 6.61274 6.74200 6.92040 7.05190 7.44403 7.55726 7.66414 7.74270 7.91261 8.31957 8.96056 9.54591 11.04926 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038742 B = 0.002346 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.564869 B =11931.874316 C =12249.347487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C 0.162 3.838 4 H 0.116 0.884 5 N -0.731 5.731 6 C 0.221 3.779 7 C -0.194 4.194 8 C -0.074 4.074 9 C -0.181 4.181 10 C -0.076 4.076 11 C -0.200 4.200 12 C 0.455 3.545 13 O -0.507 6.507 14 O -0.352 6.352 15 C 0.068 3.932 16 C -0.109 4.109 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.409 0.591 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.886 4.382 9.847 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.054 3.946 4 H 0.133 0.867 5 N -0.363 5.363 6 C 0.119 3.881 7 C -0.216 4.216 8 C -0.093 4.093 9 C -0.201 4.201 10 C -0.095 4.095 11 C -0.222 4.222 12 C 0.296 3.704 13 O -0.395 6.395 14 O -0.267 6.267 15 C -0.005 4.005 16 C -0.146 4.146 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.247 0.753 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.379 4.458 9.928 26.698 hybrid contribution 0.942 -0.323 -0.432 1.086 sum -23.437 4.136 9.496 25.624 Atomic orbital electron populations 1.22156 0.94382 1.02146 1.02589 1.22008 0.97427 0.93885 1.04066 1.20379 0.88022 0.96256 0.89905 0.86694 1.44450 1.14912 1.61937 1.15039 1.17748 0.84874 0.91494 0.94028 1.20592 0.98438 1.05480 0.97134 1.20856 0.92908 0.97212 0.98336 1.20900 1.00313 1.04633 0.94248 1.20884 0.95488 0.95721 0.97370 1.21003 0.95176 1.07107 0.98942 1.23522 0.91528 0.75044 0.80271 1.90661 1.65576 1.42427 1.40805 1.86483 1.26393 1.71564 1.42277 1.23576 0.73261 1.02125 1.01502 1.21777 1.00040 0.99684 0.93125 1.19050 0.86847 0.97718 0.97673 1.21121 0.91806 1.37953 1.05213 0.92452 1.25032 0.96913 0.95578 0.96953 1.69952 1.01787 1.45613 1.35990 0.86594 0.77515 0.79983 0.83542 1.20159 1.21253 1.20159 0.92435 0.91366 0.92041 0.89323 0.90978 0.75332 0.86256 0.86310 0.86645 0.86251 0.85280 0.91387 0.91387 0.92044 0.92052 0.96240 0.96239 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 8.22 37.16 0.31 -0.90 16 2 C -0.13 -1.23 5.57 -26.73 -0.15 -1.38 16 3 C 0.16 1.70 2.73 -69.08 -0.19 1.51 16 4 H 0.12 1.08 6.48 -51.93 -0.34 0.74 16 5 N -0.73 -7.56 5.06 -53.28 -0.27 -7.83 16 6 C 0.22 2.18 5.49 -83.78 -0.46 1.72 16 7 C -0.19 -1.81 9.90 -39.38 -0.39 -2.20 16 8 C -0.07 -0.62 10.04 -39.61 -0.40 -1.02 16 9 C -0.18 -1.47 10.04 -39.55 -0.40 -1.87 16 10 C -0.08 -0.62 10.04 -39.62 -0.40 -1.02 16 11 C -0.20 -1.79 6.72 -39.38 -0.26 -2.06 16 12 C 0.45 6.50 7.32 36.00 0.26 6.76 16 13 O -0.51 -8.55 15.59 -18.76 -0.29 -8.84 16 14 O -0.35 -5.52 10.03 -39.26 -0.39 -5.91 16 15 C 0.07 1.22 5.47 37.16 0.20 1.42 16 16 C -0.11 -2.19 5.53 -26.73 -0.15 -2.34 16 17 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.59 5.39 -51.93 -0.28 0.31 16 28 H 0.06 0.42 6.35 -51.93 -0.33 0.09 16 29 H 0.09 0.81 7.99 -51.93 -0.42 0.39 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.41 4.42 7.81 -40.82 -0.32 4.10 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 1.03 4.01 -52.49 -0.21 0.82 16 37 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 38 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -30.80 352.86 -9.00 -39.79 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.50 Total: 1.28 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -2.57 Total: -14.26 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.47 Total: -33.76 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.69 Total: -14.75 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.80 -9.00 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767341802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.064 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds