Wall clock time and date at job start Tue Mar 31 2020 06:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46834 * 2 1 4 4 H 1.09000 * 109.47774 * 305.00167 * 3 2 1 5 5 N 1.46507 * 109.47244 * 65.00040 * 3 2 1 6 6 C 1.39673 * 119.99644 * 274.99881 * 5 3 2 7 7 C 1.38918 * 120.07035 * 179.97438 * 6 5 3 8 8 C 1.38103 * 119.92232 * 180.27899 * 7 6 5 9 9 C 1.38289 * 120.07411 * 359.50929 * 8 7 6 10 10 C 1.38281 * 120.14983 * 0.47107 * 9 8 7 11 11 C 1.38102 * 120.07722 * 359.78374 * 10 9 8 12 12 C 1.50698 * 109.47226 * 184.99953 * 3 2 1 13 13 O 1.20833 * 120.00082 * 240.00080 * 12 3 2 14 14 O 1.34231 * 120.00167 * 60.00019 * 12 3 2 15 15 C 1.45198 * 117.00164 * 180.02562 * 14 12 3 16 16 C 1.53000 * 109.46941 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.46939 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47315 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99224 * 0.02562 * 18 17 16 20 20 C 1.37868 * 120.00329 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00209 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00175 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47063 * 59.99493 * 22 20 18 24 24 H 1.48499 * 109.47186 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46856 * 299.99544 * 22 20 18 26 26 H 1.09000 * 109.46689 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47119 * 300.00102 * 1 2 3 28 28 H 1.09003 * 109.47095 * 59.99989 * 1 2 3 29 29 H 1.08995 * 109.47323 * 240.00412 * 2 1 3 30 30 H 1.08997 * 109.47401 * 119.99685 * 2 1 3 31 31 H 0.97003 * 119.99776 * 95.00082 * 5 3 2 32 32 H 1.08002 * 120.03585 * 359.97438 * 7 6 5 33 33 H 1.07998 * 119.96426 * 179.72368 * 8 7 6 34 34 H 1.07993 * 119.92212 * 180.21091 * 9 8 7 35 35 H 1.07998 * 119.96120 * 179.76664 * 10 9 8 36 36 H 1.08001 * 120.04035 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.47484 * 300.00012 * 15 14 12 38 38 H 1.08995 * 109.47109 * 59.99774 * 15 14 12 39 39 H 1.09001 * 109.47415 * 299.99623 * 16 15 14 40 40 H 1.09000 * 109.47161 * 60.00499 * 16 15 14 41 41 H 1.08998 * 109.47328 * 299.99831 * 17 16 15 42 42 H 1.08995 * 109.47350 * 60.00430 * 17 16 15 43 43 H 0.97004 * 120.00545 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.3908 2.6850 1.3711 7 6 0.0215 3.3060 2.5576 8 6 -1.2288 3.8808 2.6741 9 6 -2.1089 3.8476 1.6080 10 6 -1.7443 3.2306 0.4254 11 6 -0.4975 2.6492 0.3038 12 6 3.5419 1.4444 -0.1238 13 8 4.2190 1.9419 0.7445 14 8 4.1274 0.8935 -1.1987 15 6 5.5780 0.9309 -1.2509 16 6 6.0594 0.2601 -2.5390 17 6 7.5879 0.3001 -2.5943 18 6 8.0621 -0.3601 -3.8634 19 1 7.3449 -0.7670 -4.5608 20 6 9.4113 -0.4445 -4.1339 21 7 10.2846 0.0514 -3.2848 22 14 9.9991 -1.2622 -5.7073 23 1 9.4428 -0.5387 -6.8788 24 1 11.4826 -1.2235 -5.7609 25 1 9.5390 -2.6739 -5.7332 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.2719 2.1232 1.9978 32 1 0.7096 3.3349 3.3896 33 1 -1.5183 4.3599 3.5977 34 1 -3.0847 4.3008 1.7006 35 1 -2.4355 3.2031 -0.4040 36 1 -0.2136 2.1671 -0.6200 37 1 5.9157 1.9671 -1.2324 38 1 5.9863 0.4003 -0.3909 39 1 5.7218 -0.7761 -2.5572 40 1 5.6511 0.7904 -3.3994 41 1 7.9251 1.3364 -2.5765 42 1 7.9966 -0.2299 -1.7341 43 1 11.2339 -0.0083 -3.4750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767341802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:19 Heat of formation + Delta-G solvation = -87.783888 kcal Electronic energy + Delta-G solvation = -22352.882965 eV Core-core repulsion = 18975.920409 eV Total energy + Delta-G solvation = -3376.962556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.91325 -40.40550 -38.18431 -37.12768 -35.97057 -33.87520 -33.53435 -31.61968 -30.63416 -29.18118 -27.53969 -25.19672 -24.01626 -23.19486 -22.71706 -22.19690 -21.13031 -19.33688 -18.66405 -17.98585 -17.89573 -17.73358 -16.74750 -16.52501 -16.38468 -15.90826 -15.43980 -15.06694 -14.87076 -14.54953 -14.22279 -14.09796 -13.98636 -13.86563 -13.74541 -13.39063 -13.08869 -12.81114 -12.54826 -12.50416 -12.40590 -12.19946 -12.11223 -12.02631 -11.80268 -11.52093 -11.45444 -11.39534 -11.26052 -11.05157 -10.57584 -9.71088 -8.36560 -8.22427 -6.34165 0.60662 0.74277 0.95619 1.33273 1.41943 1.44572 1.52677 2.39042 2.42870 3.05886 3.11470 3.37513 3.77393 3.81400 3.96725 4.01163 4.09653 4.19394 4.33372 4.37184 4.44330 4.46531 4.67089 4.69560 4.77544 4.79844 4.80947 4.90373 5.05690 5.09793 5.14196 5.21401 5.32616 5.41382 5.44676 5.48487 5.62190 5.66836 5.79012 5.82169 5.96042 6.17647 6.33400 6.51293 6.68495 6.81732 7.35498 8.89484 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038742 B = 0.002346 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.564869 B =11931.874316 C =12249.347487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.172 3.828 4 H 0.132 0.868 5 N -0.736 5.736 6 C 0.205 3.795 7 C -0.209 4.209 8 C -0.082 4.082 9 C -0.185 4.185 10 C -0.081 4.081 11 C -0.205 4.205 12 C 0.454 3.546 13 O -0.535 6.535 14 O -0.348 6.348 15 C 0.078 3.922 16 C -0.093 4.093 17 C 0.025 3.975 18 C -0.543 4.543 19 H 0.066 0.934 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.265 1.265 24 H -0.285 1.285 25 H -0.265 1.265 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.404 0.596 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.068 0.932 41 H -0.005 1.005 42 H -0.004 1.004 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.095 3.990 8.686 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.065 3.935 4 H 0.149 0.851 5 N -0.368 5.368 6 C 0.104 3.896 7 C -0.231 4.231 8 C -0.101 4.101 9 C -0.205 4.205 10 C -0.100 4.100 11 C -0.227 4.227 12 C 0.298 3.702 13 O -0.424 6.424 14 O -0.263 6.263 15 C 0.004 3.996 16 C -0.131 4.131 17 C -0.012 4.012 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.200 4.200 21 N -0.574 5.574 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.211 1.211 25 H -0.190 1.190 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.241 0.759 32 H 0.139 0.861 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.014 0.986 42 H 0.015 0.985 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.634 4.069 8.768 28.334 hybrid contribution 1.557 -0.142 0.009 1.563 sum -25.077 3.927 8.777 26.857 Atomic orbital electron populations 1.22104 0.92975 1.02750 1.02785 1.22000 0.98501 0.92599 1.03843 1.20473 0.84829 0.97549 0.90691 0.85061 1.44446 1.15214 1.62520 1.14656 1.17916 0.84801 0.92181 0.94736 1.20780 0.99133 1.05903 0.97285 1.21132 0.92571 0.97020 0.99336 1.21222 1.01042 1.04179 0.94066 1.21195 0.95531 0.95125 0.98113 1.21176 0.95374 1.07221 0.98967 1.24358 0.92979 0.73763 0.79150 1.90653 1.66529 1.43628 1.41622 1.86467 1.24727 1.71985 1.43130 1.23181 0.74902 1.01371 1.00106 1.21459 0.96401 1.00621 0.94589 1.18936 0.90479 0.95618 0.96149 1.21594 0.92423 1.37960 1.06114 0.91532 1.26024 0.97180 0.96181 1.00640 1.70093 1.02144 1.47003 1.38176 0.85438 0.76878 0.79270 0.79099 1.19009 1.21052 1.18971 0.91633 0.92170 0.90781 0.89059 0.91708 0.75914 0.86096 0.84615 0.84776 0.84154 0.84375 0.91983 0.91823 0.91183 0.91296 0.98612 0.98541 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.22 71.98 0.59 -1.41 16 2 C -0.13 -2.19 5.57 30.60 0.17 -2.02 16 3 C 0.17 3.43 2.73 44.24 0.12 3.55 16 4 H 0.13 2.21 6.48 -2.39 -0.02 2.19 16 5 N -0.74 -14.86 5.06 -322.49 -1.63 -16.49 16 6 C 0.21 3.86 5.49 38.22 0.21 4.07 16 7 C -0.21 -3.76 9.90 22.40 0.22 -3.54 16 8 C -0.08 -1.26 10.04 22.25 0.22 -1.03 16 9 C -0.19 -2.61 10.04 22.29 0.22 -2.39 16 10 C -0.08 -1.14 10.04 22.25 0.22 -0.92 16 11 C -0.21 -3.30 6.72 22.40 0.15 -3.15 16 12 C 0.45 12.80 7.32 71.24 0.52 13.32 16 13 O -0.53 -18.25 15.59 21.94 0.34 -17.91 16 14 O -0.35 -10.64 10.03 -51.43 -0.52 -11.16 16 15 C 0.08 2.80 5.47 71.98 0.39 3.19 16 16 C -0.09 -3.74 5.53 30.59 0.17 -3.57 16 17 C 0.03 1.32 4.97 29.85 0.15 1.47 16 18 C -0.54 -30.37 9.11 25.60 0.23 -30.13 16 19 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 20 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 21 N -0.93 -56.67 13.29 21.44 0.28 -56.38 16 22 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.93 5.39 -2.39 -0.01 0.92 16 28 H 0.07 0.81 6.35 -2.39 -0.02 0.79 16 29 H 0.09 1.50 7.99 -2.39 -0.02 1.48 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.40 8.85 7.81 -92.71 -0.72 8.13 16 32 H 0.12 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 36 H 0.14 1.86 4.01 -2.91 -0.01 1.85 16 37 H 0.06 2.29 8.13 -2.39 -0.02 2.28 16 38 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 39 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -66.09 352.86 4.85 -61.24 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.28 Total: 17.27 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 4.06 Total: -22.24 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.35 Total: -72.87 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.17 Total: -29.07 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -66.09 4.85 -61.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767341802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.540 kcal (2) G-P(sol) polarization free energy of solvation -66.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds