Wall clock time and date at job start Tue Mar 31 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46877 * 2 1 4 4 H 1.08998 * 109.47267 * 304.99983 * 3 2 1 5 5 C 1.53009 * 109.47155 * 184.99991 * 3 2 1 6 6 O 1.42902 * 109.46695 * 304.99850 * 5 3 2 7 7 C 1.42899 * 113.99480 * 179.97438 * 6 5 3 8 8 N 1.46500 * 109.47345 * 65.00170 * 3 2 1 9 9 C 1.34776 * 119.99786 * 275.00170 * 8 3 2 10 10 O 1.21283 * 120.00058 * 359.97438 * 9 8 3 11 11 C 1.50702 * 120.00183 * 180.02562 * 9 8 3 12 12 C 1.50698 * 109.47211 * 179.97438 * 11 9 8 13 13 C 1.37644 * 120.12665 * 264.99388 * 12 11 9 14 14 C 1.38616 * 120.24803 * 180.29627 * 13 12 11 15 15 C 1.38653 * 120.49742 * 359.44752 * 14 13 12 16 16 C 1.37599 * 120.25420 * 0.56010 * 15 14 13 17 17 C 1.40697 * 120.13099 * 85.02121 * 12 11 9 18 18 C 1.41396 * 120.24265 * 359.95585 * 17 12 11 19 19 H 1.08005 * 119.99657 * 334.25188 * 18 17 12 20 20 C 1.39940 * 120.00246 * 154.25894 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.40142 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.41245 * 20 18 17 23 23 H 1.48496 * 109.47262 * 59.99447 * 22 20 18 24 24 H 1.48504 * 109.47090 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46694 * 299.99081 * 22 20 18 26 26 H 1.08999 * 109.47488 * 299.99421 * 1 2 3 27 27 H 1.09000 * 109.47128 * 60.00399 * 1 2 3 28 28 H 1.09000 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47175 * 239.99921 * 2 1 3 30 30 H 1.09000 * 109.47128 * 119.99601 * 2 1 3 31 31 H 1.08996 * 109.47198 * 64.99924 * 5 3 2 32 32 H 1.09001 * 109.46573 * 185.00081 * 5 3 2 33 33 H 1.09004 * 109.47146 * 179.97438 * 7 6 5 34 34 H 1.08993 * 109.47550 * 300.00385 * 7 6 5 35 35 H 1.09006 * 109.47019 * 60.00545 * 7 6 5 36 36 H 0.96998 * 120.00192 * 94.99816 * 8 3 2 37 37 H 1.08998 * 109.47193 * 59.99462 * 11 9 8 38 38 H 1.09001 * 109.46762 * 299.99531 * 11 9 8 39 39 H 1.08000 * 119.87232 * 0.02949 * 13 12 11 40 40 H 1.07999 * 119.74563 * 179.70606 * 14 13 12 41 41 H 1.08004 * 119.87348 * 180.29358 * 15 14 13 42 42 H 1.07997 * 120.12867 * 179.74606 * 16 15 14 43 43 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 8 4.1292 0.6405 0.9122 7 6 5.5564 0.5744 0.8850 8 7 1.6524 2.0975 1.2518 9 6 0.4350 2.6643 1.3670 10 8 -0.3394 2.6326 0.4341 11 6 0.0365 3.3386 2.6544 12 6 -1.3610 3.8869 2.5227 13 6 -1.5566 5.1998 2.1587 14 6 -2.8408 5.7084 2.0428 15 6 -3.9420 4.9000 2.2802 16 6 -3.7703 3.5845 2.6455 17 6 -2.4709 3.0589 2.7718 18 6 -2.2822 1.7085 3.1460 19 1 -1.3816 1.1883 2.8549 20 6 -3.2625 1.0459 3.8934 21 7 -4.1832 1.7328 4.5194 22 14 -3.2560 -0.8192 3.9975 23 1 -1.9770 -1.2771 4.5972 24 1 -4.3891 -1.2716 4.8440 25 1 -3.3965 -1.3914 2.6344 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8499 1.0378 -1.0960 32 1 3.9354 2.4656 -0.0366 33 1 5.9068 -0.0537 1.7041 34 1 5.8825 0.1496 -0.0643 35 1 5.9688 1.5775 0.9948 36 1 2.2718 2.1232 1.9978 37 1 0.7279 4.1541 2.8666 38 1 0.0679 2.6146 3.4686 39 1 -0.7061 5.8373 1.9669 40 1 -2.9848 6.7411 1.7613 41 1 -4.9382 5.3054 2.1824 42 1 -4.6293 2.9577 2.8339 43 1 -4.8629 1.2736 5.0372 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776946425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:10 Heat of formation + Delta-G solvation = -77.281672 kcal Electronic energy + Delta-G solvation = -23869.952193 eV Core-core repulsion = 20493.445047 eV Total energy + Delta-G solvation = -3376.507145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.60459 -38.12984 -37.21913 -35.05872 -33.55356 -32.19552 -31.20774 -29.38513 -29.21528 -26.81426 -26.18862 -24.89578 -23.29232 -21.19060 -20.84026 -20.06731 -19.23754 -17.11745 -16.80922 -16.41299 -16.08799 -15.43641 -15.42263 -14.78980 -14.74500 -14.41220 -13.72567 -13.53775 -13.12738 -12.91675 -12.66282 -12.53462 -12.49651 -12.11407 -11.68371 -11.55925 -11.50024 -11.13506 -11.02824 -10.96742 -10.87412 -10.74579 -10.62352 -10.42753 -10.31443 -9.87132 -9.41548 -9.29003 -9.08960 -9.00556 -8.51043 -7.24288 -7.21972 -6.67272 -4.26991 2.86525 3.04766 3.10613 3.14962 3.34104 3.42214 3.59649 3.80443 3.99535 4.72635 4.75429 4.95485 5.08894 5.14489 5.24375 5.41607 5.45860 5.51473 5.59899 5.79433 5.89421 5.99719 6.11441 6.22067 6.25355 6.35154 6.38317 6.51829 6.57477 6.60875 6.85944 6.88994 6.95756 7.02579 7.17659 7.36766 7.49351 7.71559 7.98052 8.08245 8.16715 8.20113 8.38819 8.72215 8.98589 9.00005 9.08852 10.26983 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.005427 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.793139 B = 5158.437961 C = 6430.148066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.150 3.850 4 H 0.096 0.904 5 C 0.054 3.946 6 O -0.384 6.384 7 C 0.031 3.969 8 N -0.736 5.736 9 C 0.514 3.486 10 O -0.517 6.517 11 C -0.072 4.072 12 C -0.179 4.179 13 C -0.081 4.081 14 C -0.241 4.241 15 C -0.108 4.108 16 C -0.160 4.160 17 C 0.130 3.870 18 C -0.455 4.455 19 H 0.075 0.925 20 C 0.078 3.922 21 N -0.796 5.796 22 Si 0.900 3.100 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.264 1.264 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.399 0.601 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.829 -2.712 -4.808 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.045 3.955 4 H 0.114 0.886 5 C -0.024 4.024 6 O -0.303 6.303 7 C -0.065 4.065 8 N -0.391 5.391 9 C 0.302 3.698 10 O -0.391 6.391 11 C -0.112 4.112 12 C -0.180 4.180 13 C -0.100 4.100 14 C -0.260 4.260 15 C -0.126 4.126 16 C -0.179 4.179 17 C 0.128 3.872 18 C -0.484 4.484 19 H 0.093 0.907 20 C -0.139 4.139 21 N -0.422 5.422 22 Si 0.724 3.276 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.188 1.188 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.232 0.768 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.923 -2.856 -5.196 15.133 hybrid contribution 0.496 -0.740 0.237 0.922 sum 14.418 -3.596 -4.959 15.666 Atomic orbital electron populations 1.21866 0.94333 1.00455 1.04046 1.21839 0.97197 0.95575 1.01875 1.20997 0.90907 0.94423 0.89198 0.88597 1.22902 0.93832 0.94638 0.90979 1.87931 1.19808 1.70680 1.51896 1.22733 0.81320 1.00827 1.01648 1.46135 1.17688 1.59297 1.15982 1.21151 0.80294 0.77618 0.90725 1.90682 1.50268 1.57620 1.40517 1.20271 0.96333 0.99671 0.94892 1.19052 0.92124 0.93626 1.13237 1.20288 0.95367 0.94648 0.99680 1.20286 0.92992 0.98240 1.14471 1.20663 0.96273 0.95024 1.00660 1.21283 0.97763 0.94514 1.04353 1.17316 0.90383 0.92158 0.87377 1.19442 1.03695 0.95996 1.29301 0.90735 1.25855 0.94322 1.00298 0.93438 1.69815 1.12555 1.37702 1.22095 0.86502 0.78652 0.83136 0.79285 1.19030 1.20414 1.18818 0.90984 0.92514 0.94104 0.92284 0.91310 0.92222 0.92721 0.89659 0.94244 0.94164 0.76772 0.90836 0.88696 0.89882 0.89792 0.89701 0.86616 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.51 37.16 0.32 -2.31 16 2 C -0.13 -1.79 5.33 -26.73 -0.14 -1.93 16 3 C 0.15 2.02 2.66 -67.93 -0.18 1.84 16 4 H 0.10 1.41 7.58 -51.93 -0.39 1.01 16 5 C 0.05 0.55 5.68 37.16 0.21 0.76 16 6 O -0.38 -4.18 9.65 -35.23 -0.34 -4.52 16 7 C 0.03 0.24 11.01 101.05 1.11 1.35 16 8 N -0.74 -11.04 5.01 -53.80 -0.27 -11.31 16 9 C 0.51 9.90 6.03 -10.98 -0.07 9.84 16 10 O -0.52 -11.88 13.17 5.55 0.07 -11.81 16 11 C -0.07 -1.43 5.18 -29.04 -0.15 -1.58 16 12 C -0.18 -4.33 4.43 -103.91 -0.46 -4.79 16 13 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 14 C -0.24 -5.69 10.05 -39.29 -0.39 -6.09 16 15 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 16 C -0.16 -4.32 8.69 -38.87 -0.34 -4.66 16 17 C 0.13 3.50 5.56 -106.83 -0.59 2.90 16 18 C -0.45 -12.02 8.15 -37.74 -0.31 -12.33 16 19 H 0.07 1.92 6.35 -52.48 -0.33 1.59 16 20 C 0.08 1.99 5.16 -17.34 -0.09 1.90 16 21 N -0.80 -20.81 10.97 55.55 0.61 -20.20 16 22 Si 0.90 19.25 29.59 -169.99 -5.03 14.22 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 25 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 26 H 0.07 1.50 5.32 -51.93 -0.28 1.23 16 27 H 0.06 1.03 7.85 -51.93 -0.41 0.63 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.40 5.15 8.38 -40.82 -0.34 4.81 16 37 H 0.07 1.23 8.05 -51.93 -0.42 0.82 16 38 H 0.09 1.88 7.06 -51.93 -0.37 1.51 16 39 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.08 1.89 8.06 -52.48 -0.42 1.46 16 42 H 0.12 3.22 6.21 -52.49 -0.33 2.89 16 43 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -30.39 349.83 -8.18 -38.57 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.63 Total: 10.24 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.86 Total: -20.46 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.34 Total: -31.50 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.27 Total: -16.33 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.39 -8.18 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776946425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.713 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds