Wall clock time and date at job start Tue Mar 31 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46877 * 2 1 4 4 H 1.08998 * 109.47267 * 304.99983 * 3 2 1 5 5 C 1.53009 * 109.47155 * 184.99991 * 3 2 1 6 6 O 1.42902 * 109.46695 * 304.99850 * 5 3 2 7 7 C 1.42899 * 113.99480 * 179.97438 * 6 5 3 8 8 N 1.46500 * 109.47345 * 65.00170 * 3 2 1 9 9 C 1.34776 * 119.99786 * 275.00170 * 8 3 2 10 10 O 1.21283 * 120.00058 * 359.97438 * 9 8 3 11 11 C 1.50702 * 120.00183 * 180.02562 * 9 8 3 12 12 C 1.50698 * 109.47211 * 179.97438 * 11 9 8 13 13 C 1.37644 * 120.12665 * 264.99388 * 12 11 9 14 14 C 1.38616 * 120.24803 * 180.29627 * 13 12 11 15 15 C 1.38653 * 120.49742 * 359.44752 * 14 13 12 16 16 C 1.37599 * 120.25420 * 0.56010 * 15 14 13 17 17 C 1.40697 * 120.13099 * 85.02121 * 12 11 9 18 18 C 1.41396 * 120.24265 * 359.95585 * 17 12 11 19 19 H 1.08005 * 119.99657 * 334.25188 * 18 17 12 20 20 C 1.39940 * 120.00246 * 154.25894 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.40142 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.41245 * 20 18 17 23 23 H 1.48496 * 109.47262 * 59.99447 * 22 20 18 24 24 H 1.48504 * 109.47090 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46694 * 299.99081 * 22 20 18 26 26 H 1.08999 * 109.47488 * 299.99421 * 1 2 3 27 27 H 1.09000 * 109.47128 * 60.00399 * 1 2 3 28 28 H 1.09000 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47175 * 239.99921 * 2 1 3 30 30 H 1.09000 * 109.47128 * 119.99601 * 2 1 3 31 31 H 1.08996 * 109.47198 * 64.99924 * 5 3 2 32 32 H 1.09001 * 109.46573 * 185.00081 * 5 3 2 33 33 H 1.09004 * 109.47146 * 179.97438 * 7 6 5 34 34 H 1.08993 * 109.47550 * 300.00385 * 7 6 5 35 35 H 1.09006 * 109.47019 * 60.00545 * 7 6 5 36 36 H 0.96998 * 120.00192 * 94.99816 * 8 3 2 37 37 H 1.08998 * 109.47193 * 59.99462 * 11 9 8 38 38 H 1.09001 * 109.46762 * 299.99531 * 11 9 8 39 39 H 1.08000 * 119.87232 * 0.02949 * 13 12 11 40 40 H 1.07999 * 119.74563 * 179.70606 * 14 13 12 41 41 H 1.08004 * 119.87348 * 180.29358 * 15 14 13 42 42 H 1.07997 * 120.12867 * 179.74606 * 16 15 14 43 43 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 8 4.1292 0.6405 0.9122 7 6 5.5564 0.5744 0.8850 8 7 1.6524 2.0975 1.2518 9 6 0.4350 2.6643 1.3670 10 8 -0.3394 2.6326 0.4341 11 6 0.0365 3.3386 2.6544 12 6 -1.3610 3.8869 2.5227 13 6 -1.5566 5.1998 2.1587 14 6 -2.8408 5.7084 2.0428 15 6 -3.9420 4.9000 2.2802 16 6 -3.7703 3.5845 2.6455 17 6 -2.4709 3.0589 2.7718 18 6 -2.2822 1.7085 3.1460 19 1 -1.3816 1.1883 2.8549 20 6 -3.2625 1.0459 3.8934 21 7 -4.1832 1.7328 4.5194 22 14 -3.2560 -0.8192 3.9975 23 1 -1.9770 -1.2771 4.5972 24 1 -4.3891 -1.2716 4.8440 25 1 -3.3965 -1.3914 2.6344 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8499 1.0378 -1.0960 32 1 3.9354 2.4656 -0.0366 33 1 5.9068 -0.0537 1.7041 34 1 5.8825 0.1496 -0.0643 35 1 5.9688 1.5775 0.9948 36 1 2.2718 2.1232 1.9978 37 1 0.7279 4.1541 2.8666 38 1 0.0679 2.6146 3.4686 39 1 -0.7061 5.8373 1.9669 40 1 -2.9848 6.7411 1.7613 41 1 -4.9382 5.3054 2.1824 42 1 -4.6293 2.9577 2.8339 43 1 -4.8629 1.2736 5.0372 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776946425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:09 Heat of formation + Delta-G solvation = -95.838243 kcal Electronic energy + Delta-G solvation = -23870.756866 eV Core-core repulsion = 20493.445047 eV Total energy + Delta-G solvation = -3377.311819 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.00166 -39.41805 -38.66971 -36.28918 -35.47514 -33.73390 -32.79443 -31.30599 -30.28538 -28.36340 -27.10936 -26.68045 -24.39721 -22.83117 -22.59833 -21.36989 -20.91254 -19.03921 -17.90668 -17.67382 -17.30495 -16.89045 -16.49142 -16.27793 -16.04606 -15.74854 -15.40542 -15.28161 -14.68503 -14.35841 -14.08917 -13.89527 -13.58623 -13.48996 -13.35259 -13.10591 -12.88414 -12.74833 -12.59562 -12.45137 -12.38848 -12.18516 -12.10593 -11.85440 -11.69673 -11.29278 -11.15978 -11.00840 -10.62961 -10.52616 -9.82968 -9.19761 -9.12688 -8.57894 -6.25867 1.02322 1.16515 1.34743 1.44344 1.54330 1.95135 2.20011 2.45203 2.80844 2.89632 3.76007 3.82410 4.04729 4.21608 4.26771 4.42655 4.44833 4.46355 4.52758 4.62573 4.64882 4.65579 4.68920 4.73778 4.81291 4.85505 4.94449 5.01329 5.06210 5.11015 5.21275 5.31855 5.39410 5.55196 5.57846 5.72752 5.80998 6.07137 6.20502 6.24390 6.25789 6.45398 6.74648 6.82120 7.02554 7.14659 7.57335 8.38493 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.005427 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.793139 B = 5158.437961 C = 6430.148066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.146 3.854 4 H 0.084 0.916 5 C 0.063 3.937 6 O -0.407 6.407 7 C 0.027 3.973 8 N -0.719 5.719 9 C 0.518 3.482 10 O -0.561 6.561 11 C -0.072 4.072 12 C -0.184 4.184 13 C -0.091 4.091 14 C -0.243 4.243 15 C -0.118 4.118 16 C -0.194 4.194 17 C 0.098 3.902 18 C -0.478 4.478 19 H 0.071 0.929 20 C 0.038 3.962 21 N -0.826 5.826 22 Si 0.963 3.037 23 H -0.255 1.255 24 H -0.267 1.267 25 H -0.270 1.270 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.411 0.589 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.565 -2.897 -5.212 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.041 3.959 4 H 0.102 0.898 5 C -0.014 4.014 6 O -0.326 6.326 7 C -0.069 4.069 8 N -0.372 5.372 9 C 0.306 3.694 10 O -0.439 6.439 11 C -0.111 4.111 12 C -0.185 4.185 13 C -0.109 4.109 14 C -0.262 4.262 15 C -0.137 4.137 16 C -0.214 4.214 17 C 0.096 3.904 18 C -0.508 4.508 19 H 0.089 0.911 20 C -0.176 4.176 21 N -0.453 5.453 22 Si 0.785 3.215 23 H -0.179 1.179 24 H -0.191 1.191 25 H -0.195 1.195 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.247 0.753 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.711 -3.039 -5.580 17.878 hybrid contribution -0.302 -0.599 0.329 0.747 sum 16.409 -3.638 -5.251 17.608 Atomic orbital electron populations 1.21789 0.97098 0.99918 1.01500 1.21780 0.94413 0.96416 1.03021 1.21124 0.93561 0.93438 0.87741 0.89790 1.22786 0.90944 0.95653 0.91983 1.87890 1.21726 1.70845 1.52155 1.22903 0.79551 1.01800 1.02687 1.45942 1.16345 1.57828 1.17125 1.20930 0.81068 0.77627 0.89779 1.90670 1.51807 1.59564 1.41822 1.20281 0.94828 1.00802 0.95238 1.19525 0.93614 0.93946 1.11454 1.20721 0.96518 0.94806 0.98902 1.20697 0.92779 0.99498 1.13209 1.20934 0.97922 0.94468 1.00348 1.21291 0.97568 0.95628 1.06899 1.17696 0.91243 0.93091 0.88375 1.19575 1.04374 0.96477 1.30326 0.91061 1.26598 0.93737 1.04513 0.92747 1.69876 1.13234 1.39450 1.22737 0.85534 0.79401 0.77631 0.78943 1.17878 1.19086 1.19528 0.94586 0.93963 0.93583 0.89672 0.91455 0.90015 0.91468 0.88959 0.93030 0.93129 0.75314 0.87329 0.89098 0.86620 0.86794 0.87849 0.88676 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 8.51 71.98 0.61 -4.55 16 2 C -0.12 -3.16 5.33 30.59 0.16 -3.00 16 3 C 0.15 3.68 2.66 44.99 0.12 3.80 16 4 H 0.08 2.37 7.58 -2.39 -0.02 2.35 16 5 C 0.06 1.09 5.68 71.99 0.41 1.50 16 6 O -0.41 -7.58 9.65 -148.98 -1.44 -9.01 16 7 C 0.03 0.32 11.01 113.37 1.25 1.56 16 8 N -0.72 -20.51 5.01 -442.52 -2.22 -22.73 16 9 C 0.52 19.76 6.03 87.66 0.53 20.28 16 10 O -0.56 -26.23 13.17 -3.04 -0.04 -26.27 16 11 C -0.07 -2.80 5.18 29.10 0.15 -2.65 16 12 C -0.18 -8.93 4.43 -19.40 -0.09 -9.02 16 13 C -0.09 -4.16 9.66 22.22 0.21 -3.95 16 14 C -0.24 -11.22 10.05 22.46 0.23 -11.00 16 15 C -0.12 -5.95 10.02 22.22 0.22 -5.72 16 16 C -0.19 -10.95 8.69 22.73 0.20 -10.75 16 17 C 0.10 5.46 5.56 -21.29 -0.12 5.34 16 18 C -0.48 -26.20 8.15 23.46 0.19 -26.00 16 19 H 0.07 3.82 6.35 -2.91 -0.02 3.80 16 20 C 0.04 2.01 5.16 85.26 0.44 2.45 16 21 N -0.83 -44.73 10.97 21.82 0.24 -44.49 16 22 Si 0.96 40.29 29.59 68.60 2.03 42.32 16 23 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H 0.04 1.53 5.32 -2.39 -0.01 1.52 16 27 H 0.04 1.57 7.85 -2.39 -0.02 1.56 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.85 7.73 -2.39 -0.02 1.83 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.41 9.74 8.38 -92.71 -0.78 8.96 16 37 H 0.11 3.38 8.05 -2.39 -0.02 3.36 16 38 H 0.09 3.60 7.06 -2.39 -0.02 3.59 16 39 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 42 H 0.10 5.61 6.21 -2.91 -0.02 5.60 16 43 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 Total: -1.00 -68.54 349.83 3.32 -65.22 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: 0.23 Total: 36.69 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 4.52 Total: -41.71 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -1.98 Total: -67.22 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -1.48 Total: -35.29 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -68.54 3.32 -65.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776946425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.622 kcal (2) G-P(sol) polarization free energy of solvation -68.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds