Wall clock time and date at job start Tue Mar 31 2020 06:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46886 * 2 1 4 4 N 1.46504 * 109.47287 * 179.97438 * 3 2 1 5 5 C 1.46498 * 120.00240 * 270.00406 * 4 3 2 6 6 C 1.53001 * 109.46901 * 269.99485 * 5 4 3 7 7 O 1.42899 * 109.47043 * 64.99637 * 6 5 4 8 8 C 1.34782 * 119.99956 * 89.99457 * 4 3 2 9 9 O 1.21281 * 119.99886 * 0.02562 * 8 4 3 10 10 C 1.50701 * 120.00004 * 180.02562 * 8 4 3 11 11 C 1.50697 * 109.46814 * 180.02562 * 10 8 4 12 12 C 1.37638 * 120.12733 * 264.99634 * 11 10 8 13 13 C 1.38613 * 120.25058 * 179.97438 * 12 11 10 14 14 C 1.38652 * 120.49826 * 0.02562 * 13 12 11 15 15 C 1.37599 * 120.25327 * 0.02562 * 14 13 12 16 16 C 1.40691 * 120.12994 * 84.73059 * 11 10 8 17 17 C 1.41405 * 120.24142 * 359.97438 * 16 11 10 18 18 H 1.07989 * 120.00329 * 329.70497 * 17 16 11 19 19 C 1.39943 * 119.99458 * 149.69880 * 17 16 11 20 20 N 1.30822 * 119.99812 * 162.02343 * 19 17 16 21 21 Si 1.86803 * 120.00485 * 342.02161 * 19 17 16 22 22 H 1.48502 * 109.46988 * 95.40237 * 21 19 17 23 23 H 1.48498 * 109.47138 * 215.40020 * 21 19 17 24 24 H 1.48497 * 109.46831 * 335.40213 * 21 19 17 25 25 H 1.08998 * 109.47847 * 300.00574 * 1 2 3 26 26 H 1.09010 * 109.46981 * 60.00200 * 1 2 3 27 27 H 1.08999 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47330 * 239.99798 * 2 1 3 29 29 H 1.09003 * 109.46461 * 119.99423 * 2 1 3 30 30 H 1.08997 * 109.47614 * 59.99598 * 3 2 1 31 31 H 1.09006 * 109.47493 * 299.99361 * 3 2 1 32 32 H 1.09001 * 109.47143 * 29.99223 * 5 4 3 33 33 H 1.08991 * 109.47772 * 149.99464 * 5 4 3 34 34 H 1.08992 * 109.47252 * 184.99619 * 6 5 4 35 35 H 1.09002 * 109.47046 * 304.99943 * 6 5 4 36 36 H 0.96701 * 113.99883 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.46845 * 300.00157 * 10 8 4 38 38 H 1.09000 * 109.46853 * 60.00343 * 10 8 4 39 39 H 1.08008 * 119.87556 * 0.02562 * 12 11 10 40 40 H 1.07994 * 119.75270 * 180.02562 * 13 12 11 41 41 H 1.08004 * 119.87518 * 179.97438 * 14 13 12 42 42 H 1.07991 * 120.13103 * 179.97438 * 15 14 13 43 43 H 0.97003 * 120.00475 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2370 1.4427 1.2696 6 6 4.4918 2.8853 1.7112 7 8 3.2452 3.5242 1.9936 8 6 4.1794 1.4423 -1.1664 9 8 3.5734 1.4425 -2.2169 10 6 5.6864 1.4419 -1.1657 11 6 6.1892 1.4423 -2.5863 12 6 6.5172 0.2566 -3.2034 13 6 6.9795 0.2539 -4.5102 14 6 7.1174 1.4428 -5.2102 15 6 6.7965 2.6402 -4.6130 16 6 6.3199 2.6542 -3.2888 17 6 5.9801 3.8780 -2.6672 18 1 5.2076 3.9044 -1.9130 19 6 6.6450 5.0549 -3.0292 20 7 6.1216 6.2180 -2.7380 21 14 8.2801 4.9654 -3.9281 22 1 8.0477 5.0769 -5.3906 23 1 9.1534 6.0795 -3.4794 24 1 8.9390 3.6686 -3.6290 25 1 -0.3635 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.6476 0.9290 2.0291 33 1 5.1894 0.9289 1.1398 34 1 5.1121 2.8868 2.6074 35 1 5.0038 3.4242 0.9140 36 1 3.3306 4.4438 2.2804 37 1 6.0497 2.3318 -0.6517 38 1 6.0492 0.5517 -0.6518 39 1 6.4133 -0.6755 -2.6677 40 1 7.2341 -0.6811 -4.9867 41 1 7.4789 1.4291 -6.2279 42 1 6.9050 3.5650 -5.1599 43 1 6.5822 7.0339 -2.9893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777301338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:49 Heat of formation + Delta-G solvation = -78.797222 kcal Electronic energy + Delta-G solvation = -24038.932555 eV Core-core repulsion = 20662.359691 eV Total energy + Delta-G solvation = -3376.572865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.61731 -37.76266 -36.78599 -35.24231 -33.55242 -33.31356 -31.64048 -30.27943 -29.03265 -27.46281 -25.50336 -24.58243 -22.81489 -21.66976 -21.26187 -19.90110 -18.40342 -17.50483 -17.30143 -16.31191 -16.22441 -15.49458 -15.16977 -14.56999 -14.33608 -14.22283 -13.92092 -13.66511 -13.37794 -13.16561 -12.70892 -12.64786 -12.33503 -12.11067 -11.95371 -11.79865 -11.67391 -11.51772 -11.27268 -11.14355 -10.95313 -10.77051 -10.69530 -10.47053 -10.21669 -9.90910 -9.66950 -9.51540 -9.09252 -9.05420 -8.22598 -7.55270 -7.45553 -6.90130 -4.43711 2.60508 2.75815 3.14641 3.21769 3.34088 3.37098 3.48592 4.01507 4.32671 4.54688 5.00805 5.11886 5.20985 5.24168 5.31475 5.37354 5.47979 5.53578 5.67884 5.75830 5.83704 5.90586 5.93091 5.97474 6.02873 6.12626 6.14692 6.22321 6.31552 6.35174 6.44597 6.62463 6.76385 6.99378 6.99733 7.24899 7.47126 7.67721 7.70673 7.78861 7.91678 7.96896 8.19019 8.40199 8.73074 8.86616 8.91268 10.12052 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.005727 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.996090 B = 4887.809851 C = 5924.302389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.617 5.617 5 C 0.114 3.886 6 C 0.052 3.948 7 O -0.570 6.570 8 C 0.516 3.484 9 O -0.518 6.518 10 C -0.074 4.074 11 C -0.166 4.166 12 C -0.070 4.070 13 C -0.241 4.241 14 C -0.081 4.081 15 C -0.233 4.233 16 C 0.110 3.890 17 C -0.443 4.443 18 H 0.088 0.912 19 C 0.085 3.915 20 N -0.811 5.811 21 Si 0.909 3.091 22 H -0.271 1.271 23 H -0.293 1.293 24 H -0.244 1.244 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.378 0.622 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.443 -6.681 10.364 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C -0.002 4.002 4 N -0.352 5.352 5 C -0.010 4.010 6 C -0.027 4.027 7 O -0.375 6.375 8 C 0.305 3.695 9 O -0.392 6.392 10 C -0.113 4.113 11 C -0.167 4.167 12 C -0.088 4.088 13 C -0.260 4.260 14 C -0.099 4.099 15 C -0.252 4.252 16 C 0.107 3.893 17 C -0.472 4.472 18 H 0.106 0.894 19 C -0.133 4.133 20 N -0.436 5.436 21 Si 0.736 3.264 22 H -0.198 1.198 23 H -0.220 1.220 24 H -0.167 1.167 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.224 0.776 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.034 -6.974 9.639 12.278 hybrid contribution 0.905 0.776 -0.209 1.211 sum -2.129 -6.198 9.430 11.483 Atomic orbital electron populations 1.21675 0.95581 1.01383 1.01854 1.21889 0.95804 0.98086 1.01947 1.21389 0.79744 0.95838 1.03238 1.47957 1.06284 1.75416 1.05567 1.21569 0.97943 0.95115 0.86342 1.22783 0.86040 0.94601 0.99262 1.86433 1.30673 1.30129 1.90309 1.21085 0.90672 0.74993 0.82737 1.90676 1.70246 1.47452 1.30838 1.20365 0.90704 1.02734 0.97546 1.19097 1.10102 0.93581 0.93968 1.20426 0.98084 0.95630 0.94674 1.20323 1.13313 0.96307 0.96101 1.20592 0.98545 0.93189 0.97570 1.20992 1.11722 0.96374 0.96114 1.17481 0.88551 0.92683 0.90609 1.19395 1.17974 0.89644 1.20197 0.89398 1.26145 0.99438 0.94619 0.93134 1.69712 1.37204 0.98911 1.37728 0.86357 0.81577 0.78980 0.79520 1.19767 1.22038 1.16707 0.92820 0.92520 0.92911 0.91769 0.92479 0.90272 0.90437 0.90260 0.88927 0.93114 0.92270 0.77568 0.88472 0.90547 0.89158 0.89036 0.89037 0.88366 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.14 -1.84 6.26 -26.73 -0.17 -2.01 16 3 C 0.12 1.86 5.23 -4.04 -0.02 1.84 16 4 N -0.62 -10.04 2.44 -173.69 -0.42 -10.46 16 5 C 0.11 1.41 5.62 -4.04 -0.02 1.38 16 6 C 0.05 0.64 7.38 37.16 0.27 0.91 16 7 O -0.57 -7.29 12.48 -35.23 -0.44 -7.73 16 8 C 0.52 10.51 7.27 -10.98 -0.08 10.43 16 9 O -0.52 -12.94 15.61 5.56 0.09 -12.85 16 10 C -0.07 -1.43 3.74 -29.04 -0.11 -1.54 16 11 C -0.17 -3.87 4.43 -103.92 -0.46 -4.33 16 12 C -0.07 -1.53 9.66 -39.66 -0.38 -1.91 16 13 C -0.24 -5.27 10.05 -39.29 -0.39 -5.67 16 14 C -0.08 -1.85 10.02 -39.66 -0.40 -2.25 16 15 C -0.23 -5.89 7.17 -38.87 -0.28 -6.17 16 16 C 0.11 2.85 5.10 -106.82 -0.54 2.30 16 17 C -0.44 -12.01 8.56 -37.74 -0.32 -12.33 16 18 H 0.09 2.52 6.99 -52.49 -0.37 2.16 16 19 C 0.08 2.23 5.41 -17.34 -0.09 2.14 16 20 N -0.81 -21.68 13.93 55.55 0.77 -20.91 16 21 Si 0.91 20.96 24.52 -169.99 -4.17 16.79 16 22 H -0.27 -6.20 6.71 56.52 0.38 -5.82 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.24 -5.72 6.85 56.52 0.39 -5.33 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.13 7.11 -51.93 -0.37 0.76 16 31 H 0.08 1.41 7.42 -51.93 -0.39 1.02 16 32 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.09 0.98 6.44 -51.93 -0.33 0.65 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16 36 H 0.38 3.47 9.12 45.56 0.42 3.89 16 37 H 0.10 1.87 6.27 -51.93 -0.33 1.54 16 38 H 0.08 1.20 7.31 -51.93 -0.38 0.82 16 39 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 42 H 0.10 2.48 4.74 -52.49 -0.25 2.23 16 43 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -32.38 347.56 -7.33 -39.71 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.77 Total: 8.69 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -2.63 Total: -18.48 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.35 Total: -31.37 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.35 Total: -20.58 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.17 Total: 16.79 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.38 -7.33 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777301338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.083 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds