Wall clock time and date at job start Tue Mar 31 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46886 * 2 1 4 4 N 1.46504 * 109.47287 * 179.97438 * 3 2 1 5 5 C 1.46498 * 120.00240 * 270.00406 * 4 3 2 6 6 C 1.53001 * 109.46901 * 269.99485 * 5 4 3 7 7 O 1.42899 * 109.47043 * 64.99637 * 6 5 4 8 8 C 1.34782 * 119.99956 * 89.99457 * 4 3 2 9 9 O 1.21281 * 119.99886 * 0.02562 * 8 4 3 10 10 C 1.50701 * 120.00004 * 180.02562 * 8 4 3 11 11 C 1.50697 * 109.46814 * 180.02562 * 10 8 4 12 12 C 1.37638 * 120.12733 * 264.99634 * 11 10 8 13 13 C 1.38613 * 120.25058 * 179.97438 * 12 11 10 14 14 C 1.38652 * 120.49826 * 0.02562 * 13 12 11 15 15 C 1.37599 * 120.25327 * 0.02562 * 14 13 12 16 16 C 1.40691 * 120.12994 * 84.73059 * 11 10 8 17 17 C 1.41405 * 120.24142 * 359.97438 * 16 11 10 18 18 H 1.07989 * 120.00329 * 329.70497 * 17 16 11 19 19 C 1.39943 * 119.99458 * 149.69880 * 17 16 11 20 20 N 1.30822 * 119.99812 * 162.02343 * 19 17 16 21 21 Si 1.86803 * 120.00485 * 342.02161 * 19 17 16 22 22 H 1.48502 * 109.46988 * 95.40237 * 21 19 17 23 23 H 1.48498 * 109.47138 * 215.40020 * 21 19 17 24 24 H 1.48497 * 109.46831 * 335.40213 * 21 19 17 25 25 H 1.08998 * 109.47847 * 300.00574 * 1 2 3 26 26 H 1.09010 * 109.46981 * 60.00200 * 1 2 3 27 27 H 1.08999 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47330 * 239.99798 * 2 1 3 29 29 H 1.09003 * 109.46461 * 119.99423 * 2 1 3 30 30 H 1.08997 * 109.47614 * 59.99598 * 3 2 1 31 31 H 1.09006 * 109.47493 * 299.99361 * 3 2 1 32 32 H 1.09001 * 109.47143 * 29.99223 * 5 4 3 33 33 H 1.08991 * 109.47772 * 149.99464 * 5 4 3 34 34 H 1.08992 * 109.47252 * 184.99619 * 6 5 4 35 35 H 1.09002 * 109.47046 * 304.99943 * 6 5 4 36 36 H 0.96701 * 113.99883 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.46845 * 300.00157 * 10 8 4 38 38 H 1.09000 * 109.46853 * 60.00343 * 10 8 4 39 39 H 1.08008 * 119.87556 * 0.02562 * 12 11 10 40 40 H 1.07994 * 119.75270 * 180.02562 * 13 12 11 41 41 H 1.08004 * 119.87518 * 179.97438 * 14 13 12 42 42 H 1.07991 * 120.13103 * 179.97438 * 15 14 13 43 43 H 0.97003 * 120.00475 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2370 1.4427 1.2696 6 6 4.4918 2.8853 1.7112 7 8 3.2452 3.5242 1.9936 8 6 4.1794 1.4423 -1.1664 9 8 3.5734 1.4425 -2.2169 10 6 5.6864 1.4419 -1.1657 11 6 6.1892 1.4423 -2.5863 12 6 6.5172 0.2566 -3.2034 13 6 6.9795 0.2539 -4.5102 14 6 7.1174 1.4428 -5.2102 15 6 6.7965 2.6402 -4.6130 16 6 6.3199 2.6542 -3.2888 17 6 5.9801 3.8780 -2.6672 18 1 5.2076 3.9044 -1.9130 19 6 6.6450 5.0549 -3.0292 20 7 6.1216 6.2180 -2.7380 21 14 8.2801 4.9654 -3.9281 22 1 8.0477 5.0769 -5.3906 23 1 9.1534 6.0795 -3.4794 24 1 8.9390 3.6686 -3.6290 25 1 -0.3635 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.6476 0.9290 2.0291 33 1 5.1894 0.9289 1.1398 34 1 5.1121 2.8868 2.6074 35 1 5.0038 3.4242 0.9140 36 1 3.3306 4.4438 2.2804 37 1 6.0497 2.3318 -0.6517 38 1 6.0492 0.5517 -0.6518 39 1 6.4133 -0.6755 -2.6677 40 1 7.2341 -0.6811 -4.9867 41 1 7.4789 1.4291 -6.2279 42 1 6.9050 3.5650 -5.1599 43 1 6.5822 7.0339 -2.9893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777301338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:48 Heat of formation + Delta-G solvation = -101.017973 kcal Electronic energy + Delta-G solvation = -24039.896119 eV Core-core repulsion = 20662.359691 eV Total energy + Delta-G solvation = -3377.536429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.11897 -39.46606 -37.99831 -36.52096 -35.48424 -34.52717 -33.25421 -32.15433 -30.12596 -29.05411 -27.08617 -26.17073 -23.93984 -23.24565 -22.72690 -21.56619 -19.83540 -19.23405 -18.61142 -17.74249 -17.63000 -17.11869 -16.67855 -16.07361 -15.74604 -15.65347 -15.45705 -15.22635 -14.74675 -14.50862 -14.25282 -14.09107 -13.82124 -13.73093 -13.34481 -13.11714 -13.04560 -12.75881 -12.72070 -12.67659 -12.50697 -12.26460 -12.17419 -11.97596 -11.60698 -11.53587 -11.36078 -10.97329 -10.93094 -10.67196 -9.56139 -9.39615 -9.27953 -8.86059 -6.44329 0.80123 0.90775 1.27040 1.39343 1.49075 1.81293 2.13701 2.17920 2.64709 3.41566 3.49485 3.84602 4.07801 4.11049 4.18048 4.24039 4.30194 4.32595 4.37686 4.44892 4.53427 4.58621 4.65864 4.69245 4.74612 4.77541 4.87329 4.93681 4.98498 5.03288 5.13571 5.16914 5.24575 5.35710 5.38058 5.67395 5.74113 5.87143 5.95995 6.05910 6.29853 6.45479 6.51752 6.81332 6.86438 6.91492 7.39181 8.21910 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.005727 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.996090 B = 4887.809851 C = 5924.302389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.121 3.879 4 N -0.610 5.610 5 C 0.105 3.895 6 C 0.054 3.946 7 O -0.586 6.586 8 C 0.513 3.487 9 O -0.579 6.579 10 C -0.071 4.071 11 C -0.173 4.173 12 C -0.079 4.079 13 C -0.229 4.229 14 C -0.092 4.092 15 C -0.257 4.257 16 C 0.083 3.917 17 C -0.467 4.467 18 H 0.053 0.947 19 C 0.049 3.951 20 N -0.853 5.853 21 Si 0.963 3.037 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.250 1.250 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.038 0.962 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.023 0.977 36 H 0.391 0.609 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 -9.378 11.657 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C -0.002 4.002 4 N -0.343 5.343 5 C -0.017 4.017 6 C -0.025 4.025 7 O -0.394 6.394 8 C 0.302 3.698 9 O -0.458 6.458 10 C -0.110 4.110 11 C -0.174 4.174 12 C -0.097 4.097 13 C -0.248 4.248 14 C -0.110 4.110 15 C -0.276 4.276 16 C 0.080 3.920 17 C -0.497 4.497 18 H 0.071 0.929 19 C -0.165 4.165 20 N -0.480 5.480 21 Si 0.788 3.212 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.173 1.173 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.057 0.943 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.041 0.959 36 H 0.240 0.760 37 H 0.111 0.889 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.942 -9.663 10.994 14.765 hybrid contribution 0.500 1.448 -0.567 1.633 sum -1.442 -8.215 10.426 13.352 Atomic orbital electron populations 1.21663 0.93958 1.02551 1.01996 1.21795 0.97186 0.95993 1.01739 1.21441 0.79375 0.97381 1.01962 1.48014 1.06804 1.73444 1.06007 1.21983 0.99131 0.95729 0.84839 1.22777 0.86089 0.93991 0.99659 1.86382 1.31190 1.31437 1.90407 1.21238 0.91076 0.74405 0.83040 1.90642 1.71281 1.50693 1.33167 1.20393 0.90138 1.04549 0.95935 1.19589 1.08771 0.93326 0.95755 1.20896 0.97190 0.96462 0.95184 1.20868 1.10580 0.97369 0.95973 1.20973 0.98249 0.92681 0.99091 1.21135 1.13008 0.97322 0.96131 1.17734 0.89577 0.93307 0.91350 1.19274 1.18470 0.91170 1.20789 0.92901 1.26770 1.01871 0.94088 0.93777 1.69747 1.38740 0.99568 1.39905 0.85520 0.78290 0.78943 0.78489 1.19590 1.20317 1.17303 0.91218 0.93892 0.91202 0.94326 0.90102 0.88782 0.94337 0.87397 0.86705 0.89410 0.95899 0.75963 0.88893 0.86163 0.85575 0.85363 0.86096 0.89242 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.91 71.98 0.71 -2.30 16 2 C -0.13 -3.26 6.26 30.59 0.19 -3.07 16 3 C 0.12 3.75 5.23 86.38 0.45 4.20 16 4 N -0.61 -19.60 2.44 -821.81 -2.00 -21.60 16 5 C 0.11 2.34 5.62 86.38 0.49 2.83 16 6 C 0.05 1.25 7.38 71.98 0.53 1.78 16 7 O -0.59 -14.49 12.48 -148.98 -1.86 -16.35 16 8 C 0.51 21.21 7.27 87.66 0.64 21.85 16 9 O -0.58 -30.20 15.61 -3.03 -0.05 -30.25 16 10 C -0.07 -2.71 3.74 29.10 0.11 -2.60 16 11 C -0.17 -7.99 4.43 -19.41 -0.09 -8.08 16 12 C -0.08 -3.26 9.66 22.22 0.21 -3.05 16 13 C -0.23 -9.24 10.05 22.46 0.23 -9.02 16 14 C -0.09 -4.03 10.02 22.22 0.22 -3.81 16 15 C -0.26 -13.03 7.17 22.73 0.16 -12.87 16 16 C 0.08 4.40 5.10 -21.29 -0.11 4.29 16 17 C -0.47 -26.69 8.56 23.46 0.20 -26.49 16 18 H 0.05 3.28 6.99 -2.92 -0.02 3.26 16 19 C 0.05 2.67 5.41 85.26 0.46 3.13 16 20 N -0.85 -47.82 13.93 21.83 0.30 -47.52 16 21 Si 0.96 44.15 24.52 68.60 1.68 45.83 16 22 H -0.27 -12.13 6.71 99.48 0.67 -11.47 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.25 -11.51 6.85 99.48 0.68 -10.82 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.04 1.00 8.14 -2.38 -0.02 0.99 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 2.61 7.11 -2.39 -0.02 2.59 16 31 H 0.04 1.48 7.42 -2.38 -0.02 1.47 16 32 H 0.11 1.85 8.07 -2.39 -0.02 1.83 16 33 H 0.11 2.04 6.44 -2.39 -0.02 2.02 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.02 0.70 7.30 -2.39 -0.02 0.68 16 36 H 0.39 7.03 9.12 -74.06 -0.68 6.35 16 37 H 0.09 3.65 6.27 -2.39 -0.01 3.63 16 38 H 0.12 3.42 7.31 -2.39 -0.02 3.40 16 39 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 40 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 42 H 0.09 4.59 4.74 -2.92 -0.01 4.57 16 43 H 0.29 14.70 8.30 -92.71 -0.77 13.93 16 Total: -1.00 -74.89 347.56 2.76 -72.13 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.27 Total: 30.95 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 4.41 Total: -33.20 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: -1.70 Total: -69.12 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -1.91 Total: -46.60 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.68 Total: 45.83 kcal Total: -74.89 2.76 -72.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777301338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.886 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds