Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47456 * 2 1 4 4 H 1.09007 * 109.47226 * 55.00035 * 3 2 1 5 5 C 1.52998 * 109.47680 * 174.99868 * 3 2 1 6 6 N 1.46503 * 109.47111 * 295.00377 * 3 2 1 7 7 O 1.41599 * 120.00508 * 119.99711 * 6 3 2 8 8 C 1.42900 * 113.99778 * 270.00279 * 7 6 3 9 9 C 1.34778 * 119.99715 * 299.99383 * 6 3 2 10 10 O 1.21285 * 119.99777 * 0.02562 * 9 6 3 11 11 C 1.50701 * 119.99917 * 180.02562 * 9 6 3 12 12 C 1.50703 * 109.46823 * 180.02562 * 11 9 6 13 13 C 1.37634 * 120.13024 * 264.97601 * 12 11 9 14 14 C 1.38617 * 120.25045 * 180.02562 * 13 12 11 15 15 C 1.38655 * 120.50105 * 0.04423 * 14 13 12 16 16 C 1.37605 * 120.24631 * 359.67535 * 15 14 13 17 17 C 1.40705 * 120.12562 * 85.00136 * 12 11 9 18 18 C 1.41393 * 120.24688 * 359.97438 * 17 12 11 19 19 H 1.07998 * 119.99581 * 29.49022 * 18 17 12 20 20 C 1.39941 * 120.00208 * 209.49124 * 18 17 12 21 21 N 1.30819 * 119.99969 * 197.20678 * 20 18 17 22 22 Si 1.86802 * 119.99819 * 17.21029 * 20 18 17 23 23 H 1.48493 * 109.47177 * 269.99639 * 22 20 18 24 24 H 1.48499 * 109.46961 * 29.99940 * 22 20 18 25 25 H 1.48499 * 109.46801 * 149.99887 * 22 20 18 26 26 H 1.09006 * 109.46939 * 300.00274 * 1 2 3 27 27 H 1.09005 * 109.47214 * 60.00041 * 1 2 3 28 28 H 1.09001 * 109.47485 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47370 * 240.00037 * 2 1 3 30 30 H 1.09005 * 109.47214 * 119.99959 * 2 1 3 31 31 H 1.09007 * 109.46655 * 59.99817 * 5 3 2 32 32 H 1.08996 * 109.47124 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.46808 * 300.00402 * 5 3 2 34 34 H 1.09005 * 109.46659 * 180.02562 * 8 7 6 35 35 H 1.08997 * 109.46878 * 299.99168 * 8 7 6 36 36 H 1.08996 * 109.47620 * 59.99834 * 8 7 6 37 37 H 1.08992 * 109.47064 * 60.00168 * 11 9 6 38 38 H 1.08996 * 109.46779 * 299.99929 * 11 9 6 39 39 H 1.08002 * 119.87320 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.74550 * 180.02562 * 14 13 12 41 41 H 1.07992 * 119.87510 * 179.97438 * 15 14 13 42 42 H 1.07997 * 120.12540 * 180.29838 * 16 15 14 43 43 H 0.96994 * 120.00310 * 355.46493 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 8 0.8318 3.2511 -1.2228 8 6 -0.5682 2.9699 -1.2765 9 6 2.0770 1.6021 -2.4311 10 8 2.7795 0.6137 -2.4560 11 6 1.6788 2.2762 -3.7188 12 6 2.2791 1.5305 -4.8827 13 6 3.4767 1.9411 -5.4226 14 6 4.0309 1.2573 -6.4935 15 6 3.3870 0.1545 -7.0335 16 6 2.1916 -0.2773 -6.5061 17 6 1.6172 0.4120 -5.4219 18 6 0.3864 -0.0190 -4.8755 19 1 -0.2795 0.6955 -4.4146 20 6 0.0311 -1.3714 -4.9320 21 7 -1.2134 -1.7290 -4.7459 22 14 1.3339 -2.6659 -5.2731 23 1 1.4391 -2.8885 -6.7375 24 1 2.6428 -2.2012 -4.7478 25 1 0.9555 -3.9370 -4.6051 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9994 0.9052 -0.7161 32 1 3.9281 2.4720 0.1253 33 1 3.8531 0.9570 1.0571 34 1 -1.1278 3.9050 -1.2503 35 1 -0.7964 2.4361 -2.1990 36 1 -0.8483 2.3544 -0.4217 37 1 2.0425 3.3036 -3.7186 38 1 0.5925 2.2752 -3.8085 39 1 3.9866 2.7993 -5.0103 40 1 4.9712 1.5863 -6.9105 41 1 3.8276 -0.3705 -7.8681 42 1 1.6942 -1.1394 -6.9251 43 1 -1.8779 -1.0651 -4.5039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777523120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = -21.529509 kcal Electronic energy + Delta-G solvation = -24910.163309 eV Core-core repulsion = 21536.073759 eV Total energy + Delta-G solvation = -3374.089550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.83051 -37.90617 -36.84669 -35.22454 -33.65028 -31.89049 -31.29097 -30.13326 -29.39818 -27.06274 -26.12599 -24.54826 -23.59079 -22.06238 -21.25660 -19.68721 -19.14165 -18.10241 -17.36896 -16.11572 -15.81256 -15.30115 -14.69763 -14.34553 -14.28313 -14.14191 -13.85491 -13.64361 -13.51032 -13.48898 -13.10221 -12.57494 -12.42620 -12.08776 -11.89187 -11.74548 -11.54353 -11.30137 -11.17955 -11.05155 -10.80119 -10.77651 -10.67199 -10.35576 -10.25605 -10.12728 -9.68277 -9.25006 -8.99797 -8.93478 -8.60567 -7.64093 -7.55898 -7.16146 -4.48335 2.14957 2.66366 2.77667 3.18752 3.27165 3.44409 3.66893 4.10357 4.38704 4.65570 4.95091 5.17936 5.20604 5.30607 5.35866 5.42242 5.50594 5.59699 5.64732 5.76107 5.77997 5.83804 5.90966 5.96602 6.05132 6.12435 6.16423 6.24187 6.29458 6.38772 6.46082 6.55789 6.58063 6.78128 6.86824 7.08957 7.38146 7.52946 7.69191 7.73846 7.86724 7.88481 8.04128 8.41979 8.62560 8.69430 8.83098 10.08940 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.007343 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.905588 B = 3812.042313 C = 4547.796562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.150 4.150 3 C 0.152 3.848 4 H 0.084 0.916 5 C -0.167 4.167 6 N -0.483 5.483 7 O -0.148 6.148 8 C -0.012 4.012 9 C 0.534 3.466 10 O -0.494 6.494 11 C -0.066 4.066 12 C -0.172 4.172 13 C -0.068 4.068 14 C -0.243 4.243 15 C -0.076 4.076 16 C -0.244 4.244 17 C 0.115 3.885 18 C -0.513 4.513 19 H 0.072 0.928 20 C 0.049 3.951 21 N -0.823 5.823 22 Si 1.068 2.932 23 H -0.279 1.279 24 H -0.257 1.257 25 H -0.293 1.293 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.159 6.446 8.859 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C 0.050 3.950 4 H 0.103 0.897 5 C -0.225 4.225 6 N -0.265 5.265 7 O -0.152 6.152 8 C -0.110 4.110 9 C 0.325 3.675 10 O -0.367 6.367 11 C -0.105 4.105 12 C -0.173 4.173 13 C -0.086 4.086 14 C -0.262 4.262 15 C -0.095 4.095 16 C -0.263 4.263 17 C 0.112 3.888 18 C -0.542 4.542 19 H 0.090 0.910 20 C -0.170 4.170 21 N -0.447 5.447 22 Si 0.895 3.105 23 H -0.207 1.207 24 H -0.181 1.181 25 H -0.221 1.221 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.735 4.477 8.649 10.116 hybrid contribution -0.913 1.742 0.320 1.993 sum 1.822 6.219 8.969 11.065 Atomic orbital electron populations 1.21857 0.95962 1.02018 1.01087 1.22085 0.96190 0.96235 1.04306 1.21281 0.95605 0.92771 0.85304 0.89738 1.22195 0.94522 1.02436 1.03341 1.50564 1.44756 1.24727 1.06490 1.90564 1.15276 1.12749 1.96580 1.23496 0.82604 1.03008 1.01923 1.21134 0.79100 0.83460 0.83810 1.90661 1.36855 1.24151 1.85019 1.20233 1.02034 0.98162 0.90108 1.19077 0.97095 1.02223 0.98953 1.20444 0.94594 0.97836 0.95742 1.20335 1.01702 1.01341 1.02869 1.20606 0.95015 0.95908 0.97929 1.21122 0.99486 1.04656 1.01021 1.17506 0.91568 0.90252 0.89446 1.20472 1.02693 0.95382 1.35646 0.90993 1.27114 0.98983 0.99695 0.91204 1.70573 1.01671 1.40295 1.32118 0.83667 0.75881 0.73978 0.76944 1.20668 1.18141 1.22104 0.93493 0.92478 0.92457 0.88741 0.91069 0.89882 0.92542 0.91708 0.88209 0.92465 0.92680 0.90113 0.89282 0.89128 0.88987 0.88891 0.87827 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.89 37.16 0.33 -1.89 16 2 C -0.15 -2.28 5.28 -26.73 -0.14 -2.42 16 3 C 0.15 2.20 2.93 -67.93 -0.20 2.00 16 4 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 5 C -0.17 -2.31 9.12 37.16 0.34 -1.97 16 6 N -0.48 -8.08 2.38 -53.80 -0.13 -8.21 16 7 O -0.15 -2.21 10.83 -11.47 -0.12 -2.34 16 8 C -0.01 -0.16 10.32 101.05 1.04 0.89 16 9 C 0.53 10.77 7.16 -10.98 -0.08 10.69 16 10 O -0.49 -11.42 12.22 5.55 0.07 -11.35 16 11 C -0.07 -1.33 4.67 -29.03 -0.14 -1.47 16 12 C -0.17 -4.02 4.43 -103.91 -0.46 -4.48 16 13 C -0.07 -1.49 9.66 -39.66 -0.38 -1.87 16 14 C -0.24 -5.27 10.05 -39.29 -0.39 -5.66 16 15 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 16 C -0.24 -6.08 7.26 -38.87 -0.28 -6.36 16 17 C 0.12 2.96 5.13 -106.82 -0.55 2.41 16 18 C -0.51 -13.58 8.80 -37.74 -0.33 -13.91 16 19 H 0.07 1.92 6.61 -52.49 -0.35 1.57 16 20 C 0.05 1.29 5.42 -17.35 -0.09 1.20 16 21 N -0.82 -22.21 13.65 55.55 0.76 -21.45 16 22 Si 1.07 25.81 24.90 -169.99 -4.23 21.58 16 23 H -0.28 -6.38 6.44 56.52 0.36 -6.02 16 24 H -0.26 -6.45 7.02 56.52 0.40 -6.05 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H 0.05 0.56 8.07 -51.93 -0.42 0.15 16 27 H 0.06 0.94 5.76 -51.93 -0.30 0.64 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.81 6.04 -51.93 -0.31 1.49 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.39 6.17 -51.93 -0.32 1.07 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.83 7.13 -51.93 -0.37 0.46 16 36 H 0.05 0.65 6.30 -51.93 -0.33 0.32 16 37 H 0.08 1.45 8.05 -51.93 -0.42 1.03 16 38 H 0.09 1.81 5.50 -51.93 -0.29 1.53 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.10 2.57 4.43 -52.49 -0.23 2.34 16 43 H 0.28 7.34 8.73 -40.82 -0.36 6.99 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -29.26 339.48 -6.61 -35.87 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.33 Total: 5.73 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -1.73 Total: -24.95 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 0.63 Total: -29.66 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.06 Total: -13.69 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -4.23 Total: 21.58 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.26 -6.61 -35.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777523120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.343 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds