Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47456 * 2 1 4 4 H 1.09007 * 109.47226 * 55.00035 * 3 2 1 5 5 C 1.52998 * 109.47680 * 174.99868 * 3 2 1 6 6 N 1.46503 * 109.47111 * 295.00377 * 3 2 1 7 7 O 1.41599 * 120.00508 * 119.99711 * 6 3 2 8 8 C 1.42900 * 113.99778 * 270.00279 * 7 6 3 9 9 C 1.34778 * 119.99715 * 299.99383 * 6 3 2 10 10 O 1.21285 * 119.99777 * 0.02562 * 9 6 3 11 11 C 1.50701 * 119.99917 * 180.02562 * 9 6 3 12 12 C 1.50703 * 109.46823 * 180.02562 * 11 9 6 13 13 C 1.37634 * 120.13024 * 264.97601 * 12 11 9 14 14 C 1.38617 * 120.25045 * 180.02562 * 13 12 11 15 15 C 1.38655 * 120.50105 * 0.04423 * 14 13 12 16 16 C 1.37605 * 120.24631 * 359.67535 * 15 14 13 17 17 C 1.40705 * 120.12562 * 85.00136 * 12 11 9 18 18 C 1.41393 * 120.24688 * 359.97438 * 17 12 11 19 19 H 1.07998 * 119.99581 * 29.49022 * 18 17 12 20 20 C 1.39941 * 120.00208 * 209.49124 * 18 17 12 21 21 N 1.30819 * 119.99969 * 197.20678 * 20 18 17 22 22 Si 1.86802 * 119.99819 * 17.21029 * 20 18 17 23 23 H 1.48493 * 109.47177 * 269.99639 * 22 20 18 24 24 H 1.48499 * 109.46961 * 29.99940 * 22 20 18 25 25 H 1.48499 * 109.46801 * 149.99887 * 22 20 18 26 26 H 1.09006 * 109.46939 * 300.00274 * 1 2 3 27 27 H 1.09005 * 109.47214 * 60.00041 * 1 2 3 28 28 H 1.09001 * 109.47485 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47370 * 240.00037 * 2 1 3 30 30 H 1.09005 * 109.47214 * 119.99959 * 2 1 3 31 31 H 1.09007 * 109.46655 * 59.99817 * 5 3 2 32 32 H 1.08996 * 109.47124 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.46808 * 300.00402 * 5 3 2 34 34 H 1.09005 * 109.46659 * 180.02562 * 8 7 6 35 35 H 1.08997 * 109.46878 * 299.99168 * 8 7 6 36 36 H 1.08996 * 109.47620 * 59.99834 * 8 7 6 37 37 H 1.08992 * 109.47064 * 60.00168 * 11 9 6 38 38 H 1.08996 * 109.46779 * 299.99929 * 11 9 6 39 39 H 1.08002 * 119.87320 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.74550 * 180.02562 * 14 13 12 41 41 H 1.07992 * 119.87510 * 179.97438 * 15 14 13 42 42 H 1.07997 * 120.12540 * 180.29838 * 16 15 14 43 43 H 0.96994 * 120.00310 * 355.46493 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 8 0.8318 3.2511 -1.2228 8 6 -0.5682 2.9699 -1.2765 9 6 2.0770 1.6021 -2.4311 10 8 2.7795 0.6137 -2.4560 11 6 1.6788 2.2762 -3.7188 12 6 2.2791 1.5305 -4.8827 13 6 3.4767 1.9411 -5.4226 14 6 4.0309 1.2573 -6.4935 15 6 3.3870 0.1545 -7.0335 16 6 2.1916 -0.2773 -6.5061 17 6 1.6172 0.4120 -5.4219 18 6 0.3864 -0.0190 -4.8755 19 1 -0.2795 0.6955 -4.4146 20 6 0.0311 -1.3714 -4.9320 21 7 -1.2134 -1.7290 -4.7459 22 14 1.3339 -2.6659 -5.2731 23 1 1.4391 -2.8885 -6.7375 24 1 2.6428 -2.2012 -4.7478 25 1 0.9555 -3.9370 -4.6051 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9994 0.9052 -0.7161 32 1 3.9281 2.4720 0.1253 33 1 3.8531 0.9570 1.0571 34 1 -1.1278 3.9050 -1.2503 35 1 -0.7964 2.4361 -2.1990 36 1 -0.8483 2.3544 -0.4217 37 1 2.0425 3.3036 -3.7186 38 1 0.5925 2.2752 -3.8085 39 1 3.9866 2.7993 -5.0103 40 1 4.9712 1.5863 -6.9105 41 1 3.8276 -0.3705 -7.8681 42 1 1.6942 -1.1394 -6.9251 43 1 -1.8779 -1.0651 -4.5039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777523120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = -37.653209 kcal Electronic energy + Delta-G solvation = -24910.862485 eV Core-core repulsion = 21536.073759 eV Total energy + Delta-G solvation = -3374.788726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29195 -39.62112 -38.25131 -36.47510 -35.60166 -33.56847 -32.61468 -32.00716 -30.65118 -28.61781 -27.34890 -26.38312 -24.81257 -23.51663 -23.03628 -21.38080 -20.53708 -20.03423 -18.80577 -17.57489 -17.13208 -16.97579 -16.35275 -15.98977 -15.59316 -15.58529 -15.43360 -15.17403 -15.04140 -14.76580 -14.47339 -14.23282 -13.93755 -13.71828 -13.50530 -13.11020 -12.95592 -12.88608 -12.65307 -12.55249 -12.22740 -12.15248 -12.01816 -11.96943 -11.91417 -11.60046 -11.50930 -11.15227 -10.86393 -10.49317 -9.95666 -9.56861 -9.35202 -9.14809 -6.48620 0.74635 0.89916 0.99737 1.31122 1.51068 1.66277 1.72492 2.15287 2.68535 3.08816 3.58196 3.79559 4.01801 4.02561 4.11636 4.21853 4.27340 4.33907 4.38629 4.42027 4.46831 4.50761 4.57032 4.60984 4.64712 4.69753 4.80204 4.87953 4.93270 4.97653 5.00663 5.18510 5.23986 5.28693 5.34142 5.49648 5.58103 5.61329 5.82796 5.89180 6.02716 6.18572 6.46315 6.52175 6.73433 6.88437 7.20749 8.06895 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.007343 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.905588 B = 3812.042313 C = 4547.796562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.148 3.852 4 H 0.117 0.883 5 C -0.161 4.161 6 N -0.479 5.479 7 O -0.147 6.147 8 C -0.013 4.013 9 C 0.532 3.468 10 O -0.532 6.532 11 C -0.066 4.066 12 C -0.176 4.176 13 C -0.080 4.080 14 C -0.229 4.229 15 C -0.086 4.086 16 C -0.264 4.264 17 C 0.087 3.913 18 C -0.529 4.529 19 H 0.054 0.946 20 C 0.018 3.982 21 N -0.851 5.851 22 Si 1.095 2.905 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.287 1.287 26 H 0.080 0.920 27 H 0.032 0.968 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.137 0.863 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 8.084 9.825 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.048 3.952 4 H 0.135 0.865 5 C -0.219 4.219 6 N -0.259 5.259 7 O -0.151 6.151 8 C -0.111 4.111 9 C 0.323 3.677 10 O -0.408 6.408 11 C -0.105 4.105 12 C -0.178 4.178 13 C -0.098 4.098 14 C -0.248 4.248 15 C -0.104 4.104 16 C -0.283 4.283 17 C 0.085 3.915 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.195 4.195 21 N -0.476 5.476 22 Si 0.919 3.081 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.214 1.214 26 H 0.098 0.902 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.154 0.846 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.116 0.884 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.288 6.139 9.623 12.193 hybrid contribution -1.276 1.432 0.029 1.918 sum 3.012 7.570 9.653 12.631 Atomic orbital electron populations 1.21839 0.95679 1.01683 1.01420 1.22045 0.96418 0.96736 1.03409 1.21540 0.96355 0.92353 0.84962 0.86522 1.22142 0.93691 1.02699 1.03366 1.50420 1.44443 1.24741 1.06325 1.90550 1.16281 1.11753 1.96523 1.23661 0.81493 1.04877 1.01034 1.20961 0.78985 0.83071 0.84727 1.90653 1.38699 1.25562 1.85901 1.20235 1.01407 0.99153 0.89734 1.19480 0.97525 1.01362 0.99402 1.20876 0.94154 0.98882 0.95864 1.20870 1.02371 0.99931 1.01593 1.21004 0.94258 0.96414 0.98753 1.21295 1.00771 1.04880 1.01364 1.17760 0.91824 0.91692 0.90244 1.20389 1.03429 0.95206 1.36918 0.92775 1.27781 0.99636 1.00924 0.91165 1.70610 1.01952 1.40067 1.34961 0.83294 0.73709 0.73029 0.78025 1.18462 1.20080 1.21432 0.90160 0.94929 0.93280 0.93270 0.88260 0.93231 0.91779 0.88804 0.84569 0.95055 0.91646 0.87619 0.90173 0.86074 0.85302 0.85680 0.88406 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 8.89 71.98 0.64 -3.64 16 2 C -0.15 -4.41 5.28 30.59 0.16 -4.24 16 3 C 0.15 4.03 2.93 44.99 0.13 4.16 16 4 H 0.12 2.46 8.13 -2.38 -0.02 2.45 16 5 C -0.16 -4.17 9.12 71.98 0.66 -3.51 16 6 N -0.48 -15.63 2.38 -442.52 -1.05 -16.68 16 7 O -0.15 -4.16 10.83 -38.78 -0.42 -4.58 16 8 C -0.01 -0.32 10.32 113.37 1.17 0.85 16 9 C 0.53 21.66 7.16 87.66 0.63 22.29 16 10 O -0.53 -25.32 12.22 -3.04 -0.04 -25.36 16 11 C -0.07 -2.67 4.67 29.10 0.14 -2.54 16 12 C -0.18 -8.21 4.43 -19.40 -0.09 -8.29 16 13 C -0.08 -3.32 9.66 22.22 0.21 -3.11 16 14 C -0.23 -9.18 10.05 22.46 0.23 -8.95 16 15 C -0.09 -3.71 10.02 22.22 0.22 -3.48 16 16 C -0.26 -13.15 7.26 22.73 0.17 -12.98 16 17 C 0.09 4.57 5.13 -21.29 -0.11 4.46 16 18 C -0.53 -29.39 8.80 23.46 0.21 -29.18 16 19 H 0.05 3.09 6.61 -2.91 -0.02 3.07 16 20 C 0.02 1.01 5.42 85.26 0.46 1.48 16 21 N -0.85 -48.05 13.65 21.82 0.30 -47.75 16 22 Si 1.09 53.75 24.90 68.60 1.71 55.46 16 23 H -0.26 -11.66 6.44 99.48 0.64 -11.02 16 24 H -0.28 -14.18 7.02 99.48 0.70 -13.49 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H 0.08 1.74 8.07 -2.38 -0.02 1.72 16 27 H 0.03 1.08 5.76 -2.38 -0.01 1.06 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.95 6.04 -2.38 -0.01 1.93 16 30 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.05 1.65 6.17 -2.38 -0.01 1.63 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.14 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.03 0.92 7.13 -2.39 -0.02 0.90 16 36 H 0.06 1.43 6.30 -2.39 -0.02 1.42 16 37 H 0.11 3.65 8.05 -2.39 -0.02 3.63 16 38 H 0.08 3.38 5.50 -2.39 -0.01 3.37 16 39 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 41 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 42 H 0.10 4.89 4.43 -2.91 -0.01 4.88 16 43 H 0.28 15.28 8.73 -92.71 -0.81 14.47 16 Total: -1.00 -66.38 339.48 6.21 -60.17 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.89 Total: 25.44 kcal Atomic # 6 Polarization: -51.52 SS G_CDS: 4.82 Total: -46.69 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.75 Total: -64.44 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.46 Total: -29.93 kcal Atomic # 14 Polarization: 53.75 SS G_CDS: 1.71 Total: 55.46 kcal Total: -66.38 6.21 -60.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777523120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.512 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds