Wall clock time and date at job start Tue Mar 31 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46839 * 2 1 4 4 H 1.08996 * 109.47642 * 305.00029 * 3 2 1 5 5 C 1.53001 * 109.47106 * 184.99821 * 3 2 1 6 6 N 1.46501 * 109.47306 * 65.00111 * 3 2 1 7 7 O 1.41593 * 120.00316 * 240.00186 * 6 3 2 8 8 C 1.42903 * 113.99594 * 269.99767 * 7 6 3 9 9 C 1.34784 * 119.99876 * 59.99793 * 6 3 2 10 10 O 1.21285 * 119.99535 * 359.97438 * 9 6 3 11 11 C 1.50694 * 120.00331 * 180.02562 * 9 6 3 12 12 C 1.50697 * 109.47465 * 180.02562 * 11 9 6 13 13 C 1.37636 * 120.12597 * 265.00127 * 12 11 9 14 14 C 1.38616 * 120.24750 * 180.29922 * 13 12 11 15 15 C 1.38657 * 120.49894 * 359.44000 * 14 13 12 16 16 C 1.37596 * 120.24912 * 0.55622 * 15 14 13 17 17 C 1.40697 * 120.12851 * 85.01788 * 12 11 9 18 18 C 1.41392 * 120.24317 * 359.96308 * 17 12 11 19 19 H 1.08006 * 120.00006 * 329.77827 * 18 17 12 20 20 C 1.39944 * 120.00200 * 149.79127 * 18 17 12 21 21 N 1.30828 * 120.00577 * 162.08791 * 20 18 17 22 22 Si 1.86803 * 119.99786 * 342.08021 * 20 18 17 23 23 H 1.48499 * 109.47049 * 95.39611 * 22 20 18 24 24 H 1.48502 * 109.46957 * 215.39493 * 22 20 18 25 25 H 1.48500 * 109.46884 * 335.39201 * 22 20 18 26 26 H 1.08995 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47234 * 299.99783 * 1 2 3 28 28 H 1.08992 * 109.47394 * 59.99525 * 1 2 3 29 29 H 1.08999 * 109.47234 * 240.00217 * 2 1 3 30 30 H 1.08998 * 109.46960 * 119.99928 * 2 1 3 31 31 H 1.08995 * 109.47177 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.47408 * 300.00401 * 5 3 2 33 33 H 1.09009 * 109.46655 * 60.00419 * 5 3 2 34 34 H 1.08995 * 109.47556 * 59.99966 * 8 7 6 35 35 H 1.09004 * 109.47096 * 180.02562 * 8 7 6 36 36 H 1.09004 * 109.47404 * 299.99550 * 8 7 6 37 37 H 1.09002 * 109.47157 * 59.99673 * 11 9 6 38 38 H 1.09007 * 109.46899 * 299.99885 * 11 9 6 39 39 H 1.08000 * 119.87673 * 0.02562 * 13 12 11 40 40 H 1.08003 * 119.74782 * 179.69690 * 14 13 12 41 41 H 1.07999 * 119.87476 * 180.30792 * 15 14 13 42 42 H 1.07999 * 120.12814 * 179.74584 * 16 15 14 43 43 H 0.96989 * 120.00516 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6524 2.0975 1.2518 7 8 0.8317 3.2510 1.2228 8 6 1.5581 4.4792 1.1452 9 6 2.0770 1.6020 2.4312 10 8 2.7795 0.6137 2.4560 11 6 1.6779 2.2754 3.7189 12 6 2.2794 1.5306 4.8827 13 6 1.5461 0.5701 5.5416 14 6 2.0947 -0.1121 6.6163 15 6 3.3899 0.1555 7.0327 16 6 4.1414 1.1115 6.3888 17 6 3.5927 1.8146 5.3001 18 6 4.3556 2.7988 4.6306 19 1 4.1927 2.9858 3.5794 20 6 5.3221 3.5306 5.3298 21 7 6.2554 4.1737 4.6763 22 14 5.2796 3.5892 7.1964 23 1 6.1907 2.5529 7.7451 24 1 5.7189 4.9300 7.6596 25 1 3.8953 3.3315 7.6683 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9280 2.4721 -0.1261 32 1 3.9995 0.9054 0.7161 33 1 3.8531 0.9571 -1.0572 34 1 2.1591 4.4891 0.2360 35 1 0.8583 5.3148 1.1277 36 1 2.2110 4.5708 2.0133 37 1 0.5916 2.2737 3.8083 38 1 2.0409 3.3032 3.7191 39 1 0.5379 0.3503 5.2229 40 1 1.5103 -0.8608 7.1306 41 1 3.8091 -0.3856 7.8681 42 1 5.1486 1.3213 6.7173 43 1 6.9249 4.6811 5.1609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777523125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:08 Heat of formation + Delta-G solvation = -19.949450 kcal Electronic energy + Delta-G solvation = -24541.090251 eV Core-core repulsion = 21167.069217 eV Total energy + Delta-G solvation = -3374.021034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.79456 -37.87171 -36.80514 -35.28904 -33.56640 -31.85650 -31.05525 -30.29794 -29.54658 -27.09529 -26.02118 -24.83361 -23.54706 -22.00038 -21.28889 -19.78841 -19.18743 -17.44919 -17.27189 -16.13813 -15.81576 -15.53853 -14.59446 -14.30994 -14.23008 -13.89938 -13.76419 -13.71472 -13.61132 -13.42963 -13.03920 -12.71183 -12.42938 -12.11270 -11.87711 -11.78223 -11.63196 -11.36374 -11.19060 -11.03572 -10.80589 -10.78199 -10.72330 -10.67898 -10.24996 -10.21763 -9.68043 -9.53687 -9.10455 -8.97465 -8.58916 -7.56289 -7.47266 -6.92068 -4.45903 2.18137 2.63534 2.75417 3.13823 3.19334 3.22558 3.34108 4.00493 4.39735 4.58039 4.98925 5.15941 5.22006 5.36058 5.42588 5.47177 5.51369 5.63158 5.72694 5.78165 5.79716 5.88998 5.94862 6.03213 6.06373 6.13928 6.15552 6.23528 6.33384 6.36914 6.49782 6.57494 6.63034 6.76018 6.88838 6.98256 7.23437 7.45988 7.69688 7.77309 7.88796 7.94023 8.17485 8.37253 8.69416 8.71647 8.84649 10.10193 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.006118 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.490754 B = 4575.452954 C = 5393.394158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.152 3.848 4 H 0.084 0.916 5 C -0.176 4.176 6 N -0.482 5.482 7 O -0.148 6.148 8 C -0.008 4.008 9 C 0.532 3.468 10 O -0.498 6.498 11 C -0.070 4.070 12 C -0.166 4.166 13 C -0.069 4.069 14 C -0.240 4.240 15 C -0.080 4.080 16 C -0.232 4.232 17 C 0.109 3.891 18 C -0.444 4.444 19 H 0.086 0.914 20 C 0.085 3.915 21 N -0.812 5.812 22 Si 0.908 3.092 23 H -0.271 1.271 24 H -0.292 1.292 25 H -0.244 1.244 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 -0.280 -7.410 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.050 3.950 4 H 0.103 0.897 5 C -0.234 4.234 6 N -0.264 5.264 7 O -0.152 6.152 8 C -0.107 4.107 9 C 0.323 3.677 10 O -0.372 6.372 11 C -0.109 4.109 12 C -0.168 4.168 13 C -0.087 4.087 14 C -0.260 4.260 15 C -0.099 4.099 16 C -0.252 4.252 17 C 0.106 3.894 18 C -0.473 4.473 19 H 0.104 0.896 20 C -0.133 4.133 21 N -0.436 5.436 22 Si 0.735 3.265 23 H -0.197 1.197 24 H -0.220 1.220 25 H -0.167 1.167 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.880 -0.651 -7.446 10.861 hybrid contribution 0.405 0.530 0.606 0.901 sum -7.475 -0.121 -6.840 10.133 Atomic orbital electron populations 1.21696 0.95682 1.01078 1.01820 1.21970 0.96232 0.95759 1.03958 1.21268 0.95074 0.93270 0.85347 0.89738 1.22322 0.94886 1.02638 1.03536 1.50518 1.52076 1.17401 1.06419 1.90558 1.20211 1.07807 1.96594 1.23386 0.99103 0.86321 1.01840 1.21234 0.78184 0.84265 0.84050 1.90667 1.35319 1.25890 1.85288 1.20270 1.00349 1.00547 0.89742 1.19114 0.94746 1.02901 1.00043 1.20446 0.97634 0.95158 0.95452 1.20341 0.96791 1.06199 1.02630 1.20597 0.94372 0.96995 0.97910 1.20989 0.99412 1.01974 1.02779 1.17486 0.90261 0.91323 0.90333 1.19364 1.13824 1.15889 0.98237 0.89568 1.26133 0.92335 0.93368 1.01457 1.69699 1.10082 1.24565 1.39265 0.86359 0.81309 0.76409 0.82403 1.19745 1.22002 1.16684 0.93086 0.92377 0.93298 0.91171 0.89163 0.92731 0.89542 0.91784 0.93300 0.88138 0.92005 0.89947 0.88509 0.89040 0.88997 0.89028 0.88360 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.80 37.16 0.36 -1.45 16 2 C -0.14 -1.95 5.28 -26.73 -0.14 -2.09 16 3 C 0.15 2.19 2.93 -67.93 -0.20 1.99 16 4 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 5 C -0.18 -2.65 9.12 37.16 0.34 -2.31 16 6 N -0.48 -7.98 2.36 -53.81 -0.13 -8.11 16 7 O -0.15 -2.19 10.83 -11.47 -0.12 -2.32 16 8 C -0.01 -0.11 11.44 101.05 1.16 1.05 16 9 C 0.53 10.60 6.78 -10.98 -0.07 10.52 16 10 O -0.50 -11.39 12.22 5.55 0.07 -11.32 16 11 C -0.07 -1.40 4.50 -29.04 -0.13 -1.53 16 12 C -0.17 -3.86 4.43 -103.92 -0.46 -4.32 16 13 C -0.07 -1.50 9.66 -39.66 -0.38 -1.88 16 14 C -0.24 -5.20 10.05 -39.29 -0.39 -5.60 16 15 C -0.08 -1.82 10.02 -39.66 -0.40 -2.22 16 16 C -0.23 -5.80 7.17 -38.87 -0.28 -6.08 16 17 C 0.11 2.79 5.10 -106.83 -0.54 2.25 16 18 C -0.44 -11.88 8.55 -37.74 -0.32 -12.20 16 19 H 0.09 2.42 7.00 -52.48 -0.37 2.05 16 20 C 0.09 2.23 5.41 -17.34 -0.09 2.13 16 21 N -0.81 -21.51 13.93 55.55 0.77 -20.73 16 22 Si 0.91 20.90 24.52 -169.99 -4.17 16.73 16 23 H -0.27 -6.15 6.71 56.52 0.38 -5.77 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.24 -5.72 6.86 56.52 0.39 -5.34 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.82 7.75 -51.93 -0.40 0.42 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.53 6.04 -51.93 -0.31 1.21 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.61 6.17 -51.93 -0.32 1.29 16 33 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.91 7.13 -51.93 -0.37 0.53 16 37 H 0.08 1.45 8.05 -51.93 -0.42 1.03 16 38 H 0.10 1.96 6.12 -51.93 -0.32 1.65 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.10 2.45 4.77 -52.49 -0.25 2.20 16 43 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 LS Contribution 345.39 15.07 5.20 5.20 Total: -1.00 -29.25 345.39 -6.52 -35.76 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.58 Total: 6.52 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.56 Total: -21.74 kcal Atomic # 7 Polarization: -29.48 SS G_CDS: 0.65 Total: -28.84 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.06 Total: -13.64 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.17 Total: 16.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.25 -6.52 -35.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777523125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.813 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds