Wall clock time and date at job start Tue Mar 31 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46839 * 2 1 4 4 H 1.08996 * 109.47642 * 305.00029 * 3 2 1 5 5 C 1.53001 * 109.47106 * 184.99821 * 3 2 1 6 6 N 1.46501 * 109.47306 * 65.00111 * 3 2 1 7 7 O 1.41593 * 120.00316 * 240.00186 * 6 3 2 8 8 C 1.42903 * 113.99594 * 269.99767 * 7 6 3 9 9 C 1.34784 * 119.99876 * 59.99793 * 6 3 2 10 10 O 1.21285 * 119.99535 * 359.97438 * 9 6 3 11 11 C 1.50694 * 120.00331 * 180.02562 * 9 6 3 12 12 C 1.50697 * 109.47465 * 180.02562 * 11 9 6 13 13 C 1.37636 * 120.12597 * 265.00127 * 12 11 9 14 14 C 1.38616 * 120.24750 * 180.29922 * 13 12 11 15 15 C 1.38657 * 120.49894 * 359.44000 * 14 13 12 16 16 C 1.37596 * 120.24912 * 0.55622 * 15 14 13 17 17 C 1.40697 * 120.12851 * 85.01788 * 12 11 9 18 18 C 1.41392 * 120.24317 * 359.96308 * 17 12 11 19 19 H 1.08006 * 120.00006 * 329.77827 * 18 17 12 20 20 C 1.39944 * 120.00200 * 149.79127 * 18 17 12 21 21 N 1.30828 * 120.00577 * 162.08791 * 20 18 17 22 22 Si 1.86803 * 119.99786 * 342.08021 * 20 18 17 23 23 H 1.48499 * 109.47049 * 95.39611 * 22 20 18 24 24 H 1.48502 * 109.46957 * 215.39493 * 22 20 18 25 25 H 1.48500 * 109.46884 * 335.39201 * 22 20 18 26 26 H 1.08995 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47234 * 299.99783 * 1 2 3 28 28 H 1.08992 * 109.47394 * 59.99525 * 1 2 3 29 29 H 1.08999 * 109.47234 * 240.00217 * 2 1 3 30 30 H 1.08998 * 109.46960 * 119.99928 * 2 1 3 31 31 H 1.08995 * 109.47177 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.47408 * 300.00401 * 5 3 2 33 33 H 1.09009 * 109.46655 * 60.00419 * 5 3 2 34 34 H 1.08995 * 109.47556 * 59.99966 * 8 7 6 35 35 H 1.09004 * 109.47096 * 180.02562 * 8 7 6 36 36 H 1.09004 * 109.47404 * 299.99550 * 8 7 6 37 37 H 1.09002 * 109.47157 * 59.99673 * 11 9 6 38 38 H 1.09007 * 109.46899 * 299.99885 * 11 9 6 39 39 H 1.08000 * 119.87673 * 0.02562 * 13 12 11 40 40 H 1.08003 * 119.74782 * 179.69690 * 14 13 12 41 41 H 1.07999 * 119.87476 * 180.30792 * 15 14 13 42 42 H 1.07999 * 120.12814 * 179.74584 * 16 15 14 43 43 H 0.96989 * 120.00516 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6524 2.0975 1.2518 7 8 0.8317 3.2510 1.2228 8 6 1.5581 4.4792 1.1452 9 6 2.0770 1.6020 2.4312 10 8 2.7795 0.6137 2.4560 11 6 1.6779 2.2754 3.7189 12 6 2.2794 1.5306 4.8827 13 6 1.5461 0.5701 5.5416 14 6 2.0947 -0.1121 6.6163 15 6 3.3899 0.1555 7.0327 16 6 4.1414 1.1115 6.3888 17 6 3.5927 1.8146 5.3001 18 6 4.3556 2.7988 4.6306 19 1 4.1927 2.9858 3.5794 20 6 5.3221 3.5306 5.3298 21 7 6.2554 4.1737 4.6763 22 14 5.2796 3.5892 7.1964 23 1 6.1907 2.5529 7.7451 24 1 5.7189 4.9300 7.6596 25 1 3.8953 3.3315 7.6683 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9280 2.4721 -0.1261 32 1 3.9995 0.9054 0.7161 33 1 3.8531 0.9571 -1.0572 34 1 2.1591 4.4891 0.2360 35 1 0.8583 5.3148 1.1277 36 1 2.2110 4.5708 2.0133 37 1 0.5916 2.2737 3.8083 38 1 2.0409 3.3032 3.7191 39 1 0.5379 0.3503 5.2229 40 1 1.5103 -0.8608 7.1306 41 1 3.8091 -0.3856 7.8681 42 1 5.1486 1.3213 6.7173 43 1 6.9249 4.6811 5.1609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777523125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:08 Heat of formation + Delta-G solvation = -36.038185 kcal Electronic energy + Delta-G solvation = -24541.787911 eV Core-core repulsion = 21167.069217 eV Total energy + Delta-G solvation = -3374.718694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26124 -39.58191 -38.19998 -36.51805 -35.48870 -33.54240 -32.33567 -32.13980 -30.79597 -28.68359 -27.29546 -26.61930 -24.73562 -23.40785 -23.04076 -21.45664 -20.56834 -19.26749 -18.81009 -17.64542 -17.25790 -17.07763 -16.24419 -16.01991 -15.48636 -15.40231 -15.34395 -15.03498 -14.89908 -14.80108 -14.54807 -14.28722 -13.84803 -13.70447 -13.60273 -13.14965 -12.98099 -12.82339 -12.69292 -12.60149 -12.50971 -12.19539 -12.01132 -11.96774 -11.85433 -11.54569 -11.43520 -11.37487 -10.97501 -10.48060 -9.94226 -9.40164 -9.29084 -8.86902 -6.44948 0.74906 0.89202 1.01422 1.26713 1.39854 1.48662 1.67266 2.13474 2.63164 3.11093 3.60364 3.85775 4.01847 4.08548 4.15562 4.26736 4.31904 4.41496 4.43540 4.45672 4.48074 4.55156 4.64241 4.68788 4.71773 4.73223 4.79963 4.92984 4.95879 4.98993 5.10374 5.16016 5.26121 5.28595 5.37366 5.42786 5.60181 5.67192 5.86794 5.94796 6.05214 6.29021 6.44873 6.53878 6.80224 6.90493 7.21544 8.20927 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.006118 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.490754 B = 4575.452954 C = 5393.394158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.148 3.852 4 H 0.116 0.884 5 C -0.171 4.171 6 N -0.478 5.478 7 O -0.146 6.146 8 C -0.010 4.010 9 C 0.530 3.470 10 O -0.537 6.537 11 C -0.069 4.069 12 C -0.171 4.171 13 C -0.079 4.079 14 C -0.227 4.227 15 C -0.090 4.090 16 C -0.254 4.254 17 C 0.084 3.916 18 C -0.467 4.467 19 H 0.055 0.945 20 C 0.050 3.950 21 N -0.851 5.851 22 Si 0.960 3.040 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.252 1.252 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.138 0.862 36 H 0.034 0.966 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 -0.941 -7.552 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.048 3.952 4 H 0.134 0.866 5 C -0.229 4.229 6 N -0.258 5.258 7 O -0.150 6.150 8 C -0.107 4.107 9 C 0.321 3.679 10 O -0.413 6.413 11 C -0.108 4.108 12 C -0.173 4.173 13 C -0.097 4.097 14 C -0.246 4.246 15 C -0.108 4.108 16 C -0.273 4.273 17 C 0.081 3.919 18 C -0.497 4.497 19 H 0.073 0.927 20 C -0.164 4.164 21 N -0.478 5.478 22 Si 0.785 3.215 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.175 1.175 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.156 0.844 36 H 0.053 0.947 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.168 -1.293 -7.612 12.767 hybrid contribution 0.961 0.644 0.589 1.298 sum -9.207 -0.649 -7.024 11.598 Atomic orbital electron populations 1.21648 0.94379 1.01814 1.01827 1.21929 0.97291 0.94952 1.03411 1.21523 0.94567 0.94086 0.85034 0.86648 1.22263 0.95510 1.01801 1.03305 1.50373 1.51157 1.18016 1.06259 1.90547 1.20007 1.07859 1.96593 1.23553 0.99836 0.86309 1.01012 1.21064 0.77985 0.83890 0.84977 1.90654 1.36954 1.27556 1.86150 1.20268 1.01592 0.99597 0.89378 1.19507 0.94181 1.03035 1.00567 1.20871 0.99019 0.94490 0.95305 1.20863 0.96479 1.05588 1.01694 1.20979 0.94816 0.96416 0.98611 1.21132 0.99675 1.03143 1.03378 1.17711 0.91405 0.91599 0.91174 1.19270 1.15656 1.17705 0.97098 0.92719 1.26732 0.91905 0.92955 1.04802 1.69729 1.11156 1.26240 1.40668 0.85563 0.80693 0.77067 0.78219 1.19263 1.20424 1.17549 0.92070 0.94323 0.91191 0.88682 0.92701 0.93502 0.93683 0.88666 0.92346 0.84393 0.94725 0.87371 0.89488 0.85958 0.85336 0.85964 0.89083 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.80 71.98 0.71 -2.46 16 2 C -0.14 -3.62 5.28 30.59 0.16 -3.46 16 3 C 0.15 4.10 2.93 44.99 0.13 4.23 16 4 H 0.12 2.51 8.12 -2.39 -0.02 2.49 16 5 C -0.17 -5.18 9.12 71.98 0.66 -4.53 16 6 N -0.48 -15.71 2.36 -442.53 -1.04 -16.75 16 7 O -0.15 -4.16 10.83 -38.77 -0.42 -4.58 16 8 C -0.01 -0.23 11.44 113.37 1.30 1.06 16 9 C 0.53 21.63 6.78 87.65 0.59 22.22 16 10 O -0.54 -25.57 12.22 -3.04 -0.04 -25.60 16 11 C -0.07 -2.80 4.50 29.10 0.13 -2.67 16 12 C -0.17 -7.98 4.43 -19.41 -0.09 -8.07 16 13 C -0.08 -3.28 9.66 22.22 0.21 -3.06 16 14 C -0.23 -9.14 10.05 22.46 0.23 -8.91 16 15 C -0.09 -3.90 10.02 22.22 0.22 -3.68 16 16 C -0.25 -12.71 7.17 22.73 0.16 -12.54 16 17 C 0.08 4.39 5.10 -21.29 -0.11 4.28 16 18 C -0.47 -26.36 8.55 23.46 0.20 -26.16 16 19 H 0.05 3.32 7.00 -2.91 -0.02 3.30 16 20 C 0.05 2.72 5.41 85.26 0.46 3.18 16 21 N -0.85 -47.16 13.93 21.83 0.30 -46.85 16 22 Si 0.96 43.93 24.52 68.60 1.68 45.61 16 23 H -0.27 -11.86 6.71 99.48 0.67 -11.19 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.25 -11.70 6.86 99.48 0.68 -11.02 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.02 7.75 -2.39 -0.02 1.00 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.87 6.04 -2.39 -0.01 1.86 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.76 6.17 -2.39 -0.01 1.75 16 33 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.14 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.03 1.04 7.13 -2.38 -0.02 1.03 16 37 H 0.11 3.71 8.05 -2.39 -0.02 3.69 16 38 H 0.09 3.69 6.12 -2.38 -0.01 3.68 16 39 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 41 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 42 H 0.09 4.59 4.77 -2.91 -0.01 4.57 16 43 H 0.29 14.56 8.30 -92.72 -0.77 13.79 16 Total: -1.00 -66.66 345.39 6.39 -60.27 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.93 Total: 28.46 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 4.97 Total: -40.56 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.74 Total: -63.61 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.46 Total: -30.18 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.68 Total: 45.61 kcal Total: -66.66 6.39 -60.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777523125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.232 kcal (2) G-P(sol) polarization free energy of solvation -66.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds