Wall clock time and date at job start Tue Mar 31 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47002 * 2 1 4 4 N 1.46497 * 109.47176 * 120.00131 * 2 1 3 5 5 C 1.46498 * 120.00003 * 299.99657 * 4 2 1 6 6 C 1.50702 * 109.47296 * 269.99989 * 5 4 2 7 7 H 1.07995 * 119.99695 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99561 * 179.97438 * 6 5 4 9 9 N 1.31505 * 120.00364 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99470 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47070 * 90.00706 * 10 8 6 12 12 H 1.48498 * 109.47002 * 210.00285 * 10 8 6 13 13 H 1.48502 * 109.47346 * 330.00305 * 10 8 6 14 14 C 1.34779 * 120.00032 * 120.00406 * 4 2 1 15 15 O 1.21275 * 119.99819 * 180.02562 * 14 4 2 16 16 C 1.50699 * 119.99806 * 359.97438 * 14 4 2 17 17 C 1.50699 * 109.46892 * 180.02562 * 16 14 4 18 18 C 1.38258 * 119.99734 * 265.01848 * 17 16 14 19 19 C 1.38213 * 120.00082 * 179.97438 * 18 17 16 20 20 C 1.38263 * 119.99986 * 0.02562 * 19 18 17 21 21 C 1.38215 * 119.99577 * 359.70149 * 20 19 18 22 22 C 1.38209 * 120.00423 * 84.99936 * 17 16 14 23 23 C 1.50701 * 119.99797 * 0.02562 * 22 17 16 24 24 O 1.42903 * 109.46878 * 179.97438 * 23 22 17 25 25 H 1.09007 * 109.47120 * 300.00175 * 1 2 3 26 26 H 1.09001 * 109.47286 * 59.99817 * 1 2 3 27 27 H 1.09000 * 109.47347 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47202 * 240.00646 * 2 1 3 29 29 H 1.09000 * 109.47010 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47249 * 300.00205 * 3 2 1 31 31 H 1.08997 * 109.47101 * 60.00498 * 3 2 1 32 32 H 1.09002 * 109.46810 * 30.00653 * 5 4 2 33 33 H 1.09002 * 109.46746 * 149.99798 * 5 4 2 34 34 H 0.97004 * 120.00191 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.47345 * 60.00419 * 16 14 4 36 36 H 1.09006 * 109.46918 * 300.00179 * 16 14 4 37 37 H 1.08002 * 120.00011 * 0.02562 * 18 17 16 38 38 H 1.07994 * 120.00169 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.99986 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.99524 * 180.29857 * 21 20 19 41 41 H 1.09002 * 109.47060 * 299.99979 * 23 22 17 42 42 H 1.09001 * 109.47380 * 60.00066 * 23 22 17 43 43 H 0.96700 * 113.99509 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6644 -0.1901 2.5267 6 6 2.7032 0.8018 2.9830 7 1 3.5427 1.0362 2.3453 8 6 2.5811 1.4107 4.2140 9 7 1.5585 1.1256 4.9901 10 14 3.8684 2.6407 4.7792 11 1 3.4750 4.0046 4.3428 12 1 3.9704 2.6051 6.2602 13 1 5.1829 2.2904 4.1839 14 6 2.7932 -1.7864 1.0724 15 8 3.1971 -2.3583 2.0627 16 6 3.1568 -2.3015 -0.2963 17 6 4.0229 -3.5270 -0.1581 18 6 5.3998 -3.4085 -0.1984 19 6 6.1942 -4.5324 -0.0711 20 6 5.6119 -5.7752 0.0961 21 6 4.2355 -5.8928 0.1421 22 6 3.4408 -4.7693 0.0095 23 6 1.9400 -4.8984 0.0533 24 8 1.5851 -6.2710 0.2326 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.6904 0.2973 2.4843 33 1 1.6238 -1.0227 3.2290 34 1 1.4729 1.5537 5.8563 35 1 3.7016 -1.5309 -0.8416 36 1 2.2483 -2.5586 -0.8410 37 1 5.8547 -2.4376 -0.3286 38 1 7.2697 -4.4398 -0.1022 39 1 6.2326 -6.6534 0.1952 40 1 3.7807 -6.8631 0.2776 41 1 1.5488 -4.3102 0.8835 42 1 1.5163 -4.5332 -0.8822 43 1 0.6318 -6.4290 0.2704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779751054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:20 Heat of formation + Delta-G solvation = -67.663629 kcal Electronic energy + Delta-G solvation = -23916.108458 eV Core-core repulsion = 20540.018382 eV Total energy + Delta-G solvation = -3376.090076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.94989 -38.63006 -36.57947 -35.93185 -33.09055 -32.56227 -31.19539 -30.82844 -28.47857 -26.83946 -26.51274 -25.73653 -22.98418 -21.82011 -21.32818 -20.59316 -18.04559 -17.42818 -16.72217 -16.46053 -16.34726 -15.24339 -15.07780 -14.89161 -14.66714 -14.17670 -14.04110 -13.64717 -13.50145 -13.25767 -12.84598 -12.71883 -12.34014 -12.18483 -12.04588 -11.72374 -11.64971 -11.56722 -11.20358 -10.94338 -10.90548 -10.80723 -10.69505 -10.51321 -10.38527 -10.29018 -10.01432 -9.53773 -8.99248 -8.53429 -8.41655 -8.34782 -7.64257 -6.02740 -4.05784 1.50441 1.62101 3.29744 3.36948 3.39230 3.45284 3.79192 4.08291 4.19298 4.45989 4.86496 4.95051 5.12801 5.15516 5.19528 5.27652 5.30306 5.33259 5.43761 5.54422 5.56505 5.62296 5.65436 5.73202 5.92035 5.97946 6.11197 6.16355 6.24021 6.28307 6.34581 6.57016 6.62431 6.69791 6.80453 6.94520 7.10693 7.19910 7.47567 7.57990 7.58279 7.94297 8.26585 8.45119 8.93004 9.12379 9.58400 11.05460 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.004809 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.674809 B = 5820.542990 C = 6397.864953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.594 5.594 5 C 0.247 3.753 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.506 3.494 15 O -0.530 6.530 16 C -0.110 4.110 17 C -0.050 4.050 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.129 4.129 21 C -0.098 4.098 22 C -0.077 4.077 23 C 0.116 3.884 24 O -0.570 6.570 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -8.344 -15.142 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.215 4.215 4 N -0.327 5.327 5 C 0.128 3.872 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.292 3.708 15 O -0.407 6.407 16 C -0.150 4.150 17 C -0.051 4.051 18 C -0.125 4.125 19 C -0.139 4.139 20 C -0.147 4.147 21 C -0.116 4.116 22 C -0.077 4.077 23 C 0.039 3.961 24 O -0.375 6.375 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.913 -8.656 -14.412 16.836 hybrid contribution 0.107 1.011 0.449 1.111 sum 1.021 -7.645 -13.963 15.952 Atomic orbital electron populations 1.22160 0.95633 1.01680 1.02509 1.21004 0.94077 0.94215 0.87972 1.22142 1.01360 0.95700 1.02317 1.48349 1.49297 1.26441 1.08598 1.19223 0.95831 0.94933 0.77241 1.21430 1.08880 1.23285 1.02067 0.92424 1.24919 0.95732 0.97144 0.96356 1.69924 1.29581 1.43306 1.10709 0.86561 0.82072 0.81242 0.77938 1.20698 1.21175 1.19959 1.20124 0.79484 0.81137 0.90080 1.90709 1.52693 1.57885 1.39385 1.20816 1.00236 0.96339 0.97607 1.19068 0.93770 0.92725 0.99525 1.20918 0.92702 0.98632 1.00241 1.21062 0.99507 0.92724 1.00566 1.21095 0.94889 0.97392 1.01299 1.20885 0.93083 0.98676 0.98929 1.19414 0.94235 0.93169 1.00870 1.20929 0.92399 0.82868 0.99912 1.86410 1.28697 1.25800 1.96625 0.91259 0.92269 0.93036 0.90799 0.92754 0.93283 0.90039 0.94843 0.94169 0.92815 0.88471 0.88957 0.86095 0.86308 0.86391 0.85373 0.91677 0.92605 0.77263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.17 37.15 0.34 -1.91 16 2 C 0.13 2.05 3.17 -67.93 -0.22 1.84 16 3 C -0.16 -2.51 8.47 37.16 0.31 -2.19 16 4 N -0.59 -12.09 2.39 -167.47 -0.40 -12.49 16 5 C 0.25 6.27 4.59 -5.19 -0.02 6.24 16 6 C -0.52 -14.28 7.83 -34.44 -0.27 -14.55 16 7 H 0.06 1.59 7.63 -52.49 -0.40 1.19 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 10 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.51 10.30 7.32 -10.98 -0.08 10.22 16 15 O -0.53 -13.39 15.61 5.56 0.09 -13.31 16 16 C -0.11 -1.64 3.65 -29.04 -0.11 -1.75 16 17 C -0.05 -0.80 4.37 -104.63 -0.46 -1.25 16 18 C -0.11 -1.61 9.68 -39.58 -0.38 -1.99 16 19 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 20 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 21 C -0.10 -1.45 9.38 -39.58 -0.37 -1.82 16 22 C -0.08 -1.20 5.88 -104.63 -0.62 -1.81 16 23 C 0.12 1.57 6.22 36.01 0.22 1.79 16 24 O -0.57 -7.00 12.14 -35.23 -0.43 -7.43 16 25 H 0.07 1.12 6.66 -51.93 -0.35 0.77 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.93 5.77 -51.93 -0.30 0.63 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 32 H 0.03 0.86 6.43 -51.93 -0.33 0.52 16 33 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.10 1.26 7.70 -51.93 -0.40 0.86 16 36 H 0.09 1.12 6.48 -51.93 -0.34 0.79 16 37 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.13 1.80 7.01 -52.48 -0.37 1.43 16 41 H 0.07 1.01 7.78 -51.93 -0.40 0.60 16 42 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 43 H 0.38 2.81 9.12 45.56 0.42 3.22 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -34.36 351.04 -7.97 -42.33 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.70 Total: 4.26 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.54 Total: -9.76 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.34 Total: -38.19 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.34 Total: -20.74 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.36 -7.97 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779751054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.329 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds