Wall clock time and date at job start Tue Mar 31 2020 06:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47002 * 2 1 4 4 N 1.46497 * 109.47176 * 120.00131 * 2 1 3 5 5 C 1.46498 * 120.00003 * 299.99657 * 4 2 1 6 6 C 1.50702 * 109.47296 * 269.99989 * 5 4 2 7 7 H 1.07995 * 119.99695 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99561 * 179.97438 * 6 5 4 9 9 N 1.31505 * 120.00364 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99470 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47070 * 90.00706 * 10 8 6 12 12 H 1.48498 * 109.47002 * 210.00285 * 10 8 6 13 13 H 1.48502 * 109.47346 * 330.00305 * 10 8 6 14 14 C 1.34779 * 120.00032 * 120.00406 * 4 2 1 15 15 O 1.21275 * 119.99819 * 180.02562 * 14 4 2 16 16 C 1.50699 * 119.99806 * 359.97438 * 14 4 2 17 17 C 1.50699 * 109.46892 * 180.02562 * 16 14 4 18 18 C 1.38258 * 119.99734 * 265.01848 * 17 16 14 19 19 C 1.38213 * 120.00082 * 179.97438 * 18 17 16 20 20 C 1.38263 * 119.99986 * 0.02562 * 19 18 17 21 21 C 1.38215 * 119.99577 * 359.70149 * 20 19 18 22 22 C 1.38209 * 120.00423 * 84.99936 * 17 16 14 23 23 C 1.50701 * 119.99797 * 0.02562 * 22 17 16 24 24 O 1.42903 * 109.46878 * 179.97438 * 23 22 17 25 25 H 1.09007 * 109.47120 * 300.00175 * 1 2 3 26 26 H 1.09001 * 109.47286 * 59.99817 * 1 2 3 27 27 H 1.09000 * 109.47347 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47202 * 240.00646 * 2 1 3 29 29 H 1.09000 * 109.47010 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47249 * 300.00205 * 3 2 1 31 31 H 1.08997 * 109.47101 * 60.00498 * 3 2 1 32 32 H 1.09002 * 109.46810 * 30.00653 * 5 4 2 33 33 H 1.09002 * 109.46746 * 149.99798 * 5 4 2 34 34 H 0.97004 * 120.00191 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.47345 * 60.00419 * 16 14 4 36 36 H 1.09006 * 109.46918 * 300.00179 * 16 14 4 37 37 H 1.08002 * 120.00011 * 0.02562 * 18 17 16 38 38 H 1.07994 * 120.00169 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.99986 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.99524 * 180.29857 * 21 20 19 41 41 H 1.09002 * 109.47060 * 299.99979 * 23 22 17 42 42 H 1.09001 * 109.47380 * 60.00066 * 23 22 17 43 43 H 0.96700 * 113.99509 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6644 -0.1901 2.5267 6 6 2.7032 0.8018 2.9830 7 1 3.5427 1.0362 2.3453 8 6 2.5811 1.4107 4.2140 9 7 1.5585 1.1256 4.9901 10 14 3.8684 2.6407 4.7792 11 1 3.4750 4.0046 4.3428 12 1 3.9704 2.6051 6.2602 13 1 5.1829 2.2904 4.1839 14 6 2.7932 -1.7864 1.0724 15 8 3.1971 -2.3583 2.0627 16 6 3.1568 -2.3015 -0.2963 17 6 4.0229 -3.5270 -0.1581 18 6 5.3998 -3.4085 -0.1984 19 6 6.1942 -4.5324 -0.0711 20 6 5.6119 -5.7752 0.0961 21 6 4.2355 -5.8928 0.1421 22 6 3.4408 -4.7693 0.0095 23 6 1.9400 -4.8984 0.0533 24 8 1.5851 -6.2710 0.2326 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.6904 0.2973 2.4843 33 1 1.6238 -1.0227 3.2290 34 1 1.4729 1.5537 5.8563 35 1 3.7016 -1.5309 -0.8416 36 1 2.2483 -2.5586 -0.8410 37 1 5.8547 -2.4376 -0.3286 38 1 7.2697 -4.4398 -0.1022 39 1 6.2326 -6.6534 0.1952 40 1 3.7807 -6.8631 0.2776 41 1 1.5488 -4.3102 0.8835 42 1 1.5163 -4.5332 -0.8822 43 1 0.6318 -6.4290 0.2704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779751054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:19 Heat of formation + Delta-G solvation = -90.899933 kcal Electronic energy + Delta-G solvation = -23917.116059 eV Core-core repulsion = 20540.018382 eV Total energy + Delta-G solvation = -3377.097677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.27465 -39.96742 -37.57534 -37.46857 -34.98905 -33.94245 -32.38833 -32.26190 -30.08646 -28.25014 -27.87284 -26.85771 -24.88079 -23.05507 -22.62380 -21.76121 -19.53199 -18.60831 -18.41259 -18.18992 -17.46414 -16.85849 -16.39905 -16.20675 -15.94262 -15.58025 -15.46214 -14.82481 -14.71818 -14.66736 -14.35636 -14.01689 -13.88446 -13.36880 -13.25829 -13.22895 -13.03119 -12.94422 -12.81886 -12.73090 -12.50345 -12.20037 -12.09472 -11.90305 -11.74676 -11.60398 -11.49141 -11.26212 -10.61682 -10.59834 -9.66342 -9.46933 -9.38743 -8.19103 -6.30572 0.40610 0.51483 1.34645 1.37707 1.47221 1.87673 2.31731 2.45395 2.88850 3.10891 3.27759 3.70499 3.87617 3.90230 4.05142 4.11415 4.19174 4.29611 4.33337 4.40284 4.43991 4.48005 4.57607 4.70151 4.84665 4.87124 4.89788 5.02396 5.07349 5.12419 5.14793 5.18799 5.27131 5.46027 5.56415 5.60123 5.62524 5.66299 5.70614 5.91954 6.12797 6.13413 6.75936 6.84898 6.87382 7.33203 7.55251 8.88121 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.004809 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.674809 B = 5820.542990 C = 6397.864953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 C -0.153 4.153 4 N -0.598 5.598 5 C 0.266 3.734 6 C -0.523 4.523 7 H 0.053 0.947 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.263 1.263 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.499 3.501 15 O -0.591 6.591 16 C -0.095 4.095 17 C -0.072 4.072 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.130 4.130 21 C -0.115 4.115 22 C -0.096 4.096 23 C 0.121 3.879 24 O -0.581 6.581 25 H 0.036 0.964 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.118 0.882 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.025 0.975 33 H -0.011 1.011 34 H 0.264 0.736 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.131 0.869 41 H 0.038 0.962 42 H 0.086 0.914 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 -8.023 -17.892 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 C -0.211 4.211 4 N -0.329 5.329 5 C 0.144 3.856 6 C -0.562 4.562 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.784 3.216 11 H -0.188 1.188 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.288 3.712 15 O -0.471 6.471 16 C -0.134 4.134 17 C -0.072 4.072 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.148 4.148 21 C -0.133 4.133 22 C -0.097 4.097 23 C 0.043 3.957 24 O -0.389 6.389 25 H 0.055 0.945 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.136 0.864 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.007 0.993 34 H 0.073 0.927 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.149 0.851 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.625 -8.322 -17.217 19.192 hybrid contribution -0.146 0.837 1.289 1.544 sum 1.479 -7.485 -15.928 17.661 Atomic orbital electron populations 1.22128 0.94273 1.02323 1.02754 1.21451 0.95256 0.94024 0.87191 1.22090 1.00679 0.95930 1.02389 1.48377 1.49369 1.26925 1.08224 1.18607 0.95158 0.92451 0.79359 1.21664 1.08943 1.23379 1.02198 0.92835 1.25784 0.97760 0.99136 0.96573 1.70049 1.31394 1.44607 1.11131 0.85540 0.79243 0.79523 0.77280 1.18835 1.21050 1.19908 1.21112 0.78095 0.80204 0.91766 1.90674 1.54874 1.59587 1.42008 1.20774 1.01965 0.96662 0.93988 1.19242 0.94333 0.93014 1.00628 1.21229 0.92866 0.99659 1.00332 1.21415 1.00868 0.92373 0.99798 1.21456 0.94764 0.98496 1.00052 1.21096 0.93919 0.98783 0.99525 1.19762 0.95487 0.93500 1.00909 1.20842 0.91507 0.83129 1.00187 1.86364 1.30837 1.25093 1.96644 0.94504 0.88434 0.92256 0.86430 0.93741 0.89146 0.93953 0.95667 0.99324 0.92691 0.85819 0.85634 0.85160 0.83759 0.83776 0.85144 0.94424 0.89584 0.74948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 9.17 71.98 0.66 -3.38 16 2 C 0.12 3.57 3.17 44.99 0.14 3.71 16 3 C -0.15 -4.60 8.47 71.98 0.61 -3.99 16 4 N -0.60 -24.49 2.39 -802.16 -1.91 -26.40 16 5 C 0.27 14.16 4.59 85.63 0.39 14.56 16 6 C -0.52 -29.78 7.83 25.60 0.20 -29.58 16 7 H 0.05 3.02 7.63 -2.91 -0.02 3.00 16 8 C 0.01 0.33 5.46 84.66 0.46 0.79 16 9 N -0.93 -56.85 13.29 21.45 0.28 -56.57 16 10 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 11 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 13 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 14 C 0.50 20.41 7.32 87.66 0.64 21.05 16 15 O -0.59 -31.09 15.61 -3.01 -0.05 -31.13 16 16 C -0.09 -2.62 3.65 29.10 0.11 -2.51 16 17 C -0.07 -2.17 4.37 -19.87 -0.09 -2.26 16 18 C -0.12 -3.52 9.68 22.27 0.22 -3.31 16 19 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 20 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 21 C -0.12 -3.34 9.38 22.27 0.21 -3.13 16 22 C -0.10 -2.93 5.88 -19.87 -0.12 -3.05 16 23 C 0.12 3.15 6.22 71.24 0.44 3.60 16 24 O -0.58 -13.72 12.14 -148.98 -1.81 -15.53 16 25 H 0.04 1.18 6.66 -2.38 -0.02 1.16 16 26 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.12 2.43 5.77 -2.39 -0.01 2.41 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 1.60 6.92 -2.39 -0.02 1.58 16 32 H 0.03 1.37 6.43 -2.39 -0.02 1.36 16 33 H -0.01 -0.72 7.42 -2.39 -0.02 -0.73 16 34 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.12 2.76 7.70 -2.39 -0.02 2.74 16 36 H 0.13 2.59 6.48 -2.38 -0.02 2.58 16 37 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 38 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 39 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.13 3.59 7.01 -2.91 -0.02 3.57 16 41 H 0.04 1.19 7.78 -2.39 -0.02 1.17 16 42 H 0.09 1.67 7.51 -2.39 -0.02 1.65 16 43 H 0.40 5.43 9.12 -74.06 -0.68 4.76 16 Total: -1.00 -79.68 351.04 3.20 -76.47 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.33 Total: 19.32 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 4.33 Total: -13.60 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -1.63 Total: -82.97 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -1.86 Total: -46.67 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -79.68 3.20 -76.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779751054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.427 kcal (2) G-P(sol) polarization free energy of solvation -79.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds