Wall clock time and date at job start Tue Mar 31 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47392 * 2 1 4 4 H 1.09007 * 109.47043 * 305.00308 * 3 2 1 5 5 C 1.52998 * 109.47681 * 185.00279 * 3 2 1 6 6 O 1.42900 * 109.47090 * 174.99761 * 5 3 2 7 7 C 1.50699 * 109.46764 * 65.00004 * 3 2 1 8 8 O 1.21280 * 120.00298 * 52.34011 * 7 3 2 9 9 N 1.34785 * 119.99992 * 232.33794 * 7 3 2 10 10 C 1.46500 * 119.99586 * 2.84369 * 9 7 3 11 11 C 1.50704 * 109.46822 * 91.73370 * 10 9 7 12 12 H 1.07994 * 120.00189 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99656 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99889 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00494 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47257 * 89.99804 * 15 13 11 17 17 H 1.48493 * 109.47383 * 210.00132 * 15 13 11 18 18 H 1.48507 * 109.46667 * 329.99741 * 15 13 11 19 19 C 1.39925 * 119.99825 * 182.84843 * 9 7 3 20 20 C 1.38866 * 120.07075 * 352.49736 * 19 9 7 21 21 C 1.38115 * 119.92545 * 179.79381 * 20 19 9 22 22 C 1.38276 * 120.07332 * 0.48973 * 21 20 19 23 23 C 1.50705 * 119.93112 * 179.76966 * 22 21 20 24 24 C 1.38288 * 120.13935 * 359.74022 * 22 21 20 25 25 C 1.38107 * 120.06811 * 0.02635 * 24 22 21 26 26 H 1.09001 * 109.47096 * 299.99416 * 1 2 3 27 27 H 1.09007 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47392 * 60.00094 * 1 2 3 29 29 H 1.09002 * 109.47866 * 120.00417 * 2 1 3 30 30 H 1.09009 * 109.46970 * 240.00289 * 2 1 3 31 31 H 1.09000 * 109.46999 * 295.00231 * 5 3 2 32 32 H 1.08999 * 109.46788 * 54.99733 * 5 3 2 33 33 H 0.96703 * 113.99388 * 180.02562 * 6 5 3 34 34 H 1.09002 * 109.46950 * 211.72811 * 10 9 7 35 35 H 1.08994 * 109.47671 * 331.72715 * 10 9 7 36 36 H 0.96992 * 119.99914 * 180.02562 * 14 13 11 37 37 H 1.07998 * 120.03574 * 0.03123 * 20 19 9 38 38 H 1.08006 * 119.96284 * 180.23535 * 21 20 19 39 39 H 1.09001 * 109.46555 * 269.97241 * 23 22 21 40 40 H 1.08997 * 109.47225 * 29.97161 * 23 22 21 41 41 H 1.08997 * 109.46918 * 149.97975 * 23 22 21 42 42 H 1.07993 * 119.96237 * 180.02562 * 24 22 21 43 43 H 1.08008 * 120.03266 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 8 4.0314 2.7900 -0.2430 7 6 1.6413 2.1162 1.2877 8 8 1.9044 1.5958 2.3511 9 7 0.9924 3.2971 1.2576 10 6 0.6194 3.8954 -0.0266 11 6 -0.7706 3.4510 -0.4029 12 1 -1.3209 2.7889 0.2490 13 6 -1.3396 3.8899 -1.5796 14 7 -2.5525 3.5017 -1.9083 15 14 -0.3876 5.0346 -2.7077 16 1 0.3995 4.2317 -3.6777 17 1 -1.3373 5.9076 -3.4431 18 1 0.5320 5.8745 -1.8988 19 6 0.6750 3.9516 2.4530 20 6 0.8861 3.3180 3.6705 21 6 0.5757 3.9684 4.8487 22 6 0.0459 5.2453 4.8165 23 6 -0.2964 5.9500 6.1038 24 6 -0.1699 5.8771 3.6055 25 6 0.1428 5.2340 2.4240 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 4.0030 0.9836 0.7595 32 1 3.8570 0.8801 -1.0114 33 1 4.9917 2.8673 -0.3270 34 1 0.6430 4.9818 0.0582 35 1 1.3236 3.5756 -0.7946 36 1 -2.9527 3.8101 -2.7362 37 1 1.2960 2.3192 3.6961 38 1 0.7432 3.4776 5.7961 39 1 -1.3274 5.7259 6.3776 40 1 0.3719 5.6081 6.8941 41 1 -0.1815 7.0257 5.9708 42 1 -0.5834 6.8745 3.5837 43 1 -0.0264 5.7279 1.4785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779754793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:24 Heat of formation + Delta-G solvation = -53.411028 kcal Electronic energy + Delta-G solvation = -24444.798388 eV Core-core repulsion = 21069.326351 eV Total energy + Delta-G solvation = -3375.472037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42980 -38.34437 -36.67187 -35.45243 -34.23472 -32.66856 -31.36265 -30.34114 -28.92797 -28.14802 -26.11831 -23.49536 -23.14923 -22.24338 -21.65601 -20.37138 -18.48973 -17.35171 -17.08330 -17.02219 -16.43098 -15.16330 -15.01280 -14.66646 -14.26494 -14.10416 -13.75124 -13.52367 -13.48347 -13.32435 -12.91546 -12.77521 -12.54090 -12.22435 -11.92622 -11.90877 -11.75582 -11.55278 -11.31274 -11.08074 -10.87725 -10.71358 -10.69229 -10.47129 -10.35581 -10.23721 -9.91297 -9.70259 -9.06634 -8.76868 -8.57844 -8.31744 -7.05234 -6.23907 -4.25950 1.85795 2.03630 3.15616 3.23137 3.24277 3.26724 3.61725 4.24190 4.25983 4.45546 4.89806 5.06067 5.24601 5.33153 5.34808 5.37393 5.52823 5.55618 5.60305 5.64041 5.72746 5.84139 5.89913 5.99424 6.07943 6.12779 6.15603 6.24860 6.31234 6.37427 6.46271 6.58599 6.68913 6.72906 6.94156 6.98282 6.98828 7.17746 7.25750 7.36715 7.70022 7.82572 8.02303 8.34701 8.74434 8.83819 9.33818 10.88167 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.007355 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.021060 B = 3806.025120 C = 5118.629078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.116 4.116 4 H 0.117 0.883 5 C 0.089 3.911 6 O -0.569 6.569 7 C 0.540 3.460 8 O -0.546 6.546 9 N -0.522 5.522 10 C 0.198 3.802 11 C -0.538 4.538 12 H 0.082 0.918 13 C 0.081 3.919 14 N -0.886 5.886 15 Si 0.865 3.135 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.263 1.263 19 C 0.171 3.829 20 C -0.175 4.175 21 C -0.106 4.106 22 C -0.133 4.133 23 C -0.103 4.103 24 C -0.101 4.101 25 C -0.145 4.145 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.377 0.623 34 H 0.040 0.960 35 H 0.045 0.955 36 H 0.267 0.733 37 H 0.178 0.822 38 H 0.114 0.886 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.116 0.884 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.871 -0.883 5.497 11.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.137 4.137 4 H 0.135 0.865 5 C 0.010 3.990 6 O -0.374 6.374 7 C 0.331 3.669 8 O -0.427 6.427 9 N -0.239 5.239 10 C 0.078 3.922 11 C -0.576 4.576 12 H 0.100 0.900 13 C -0.123 4.123 14 N -0.523 5.523 15 Si 0.691 3.309 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.188 1.188 19 C 0.075 3.925 20 C -0.194 4.194 21 C -0.124 4.124 22 C -0.134 4.134 23 C -0.160 4.160 24 C -0.120 4.120 25 C -0.165 4.165 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.223 0.777 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.194 0.806 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.134 0.866 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.222 -1.036 5.833 10.961 hybrid contribution 0.736 0.667 -0.955 1.378 sum 9.958 -0.370 4.878 11.095 Atomic orbital electron populations 1.21767 0.93987 1.01061 1.03958 1.21324 0.97515 0.92774 1.02190 1.21539 0.95235 0.98694 0.98269 0.86504 1.22108 0.93125 0.83631 1.00094 1.86571 1.26971 1.26931 1.96895 1.20357 0.76024 0.79888 0.90610 1.90230 1.56613 1.64699 1.31163 1.45593 1.51504 1.19833 1.07003 1.20118 0.97402 0.94970 0.79714 1.21270 0.98191 1.31307 1.06870 0.90031 1.24799 0.94682 0.95594 0.97254 1.69881 1.14128 1.44187 1.24142 0.87018 0.80376 0.81806 0.81705 1.19719 1.20769 1.18770 1.18024 0.96707 0.91955 0.85791 1.22685 1.02683 1.03842 0.90233 1.20894 0.99565 0.94239 0.97724 1.19764 1.03030 0.95731 0.94834 1.20655 1.01131 0.99559 0.94662 1.20689 1.00417 0.99436 0.91474 1.20976 1.02333 0.94122 0.99056 0.92625 0.93203 0.90744 0.91329 0.91309 0.92934 0.92691 0.77703 0.94184 0.93702 0.92313 0.80551 0.86819 0.91998 0.92320 0.92282 0.86556 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.73 37.15 0.36 -2.32 16 2 C -0.10 -1.56 5.32 -26.73 -0.14 -1.70 16 3 C -0.12 -2.05 2.05 -91.77 -0.19 -2.23 16 4 H 0.12 2.26 5.44 -51.93 -0.28 1.98 16 5 C 0.09 1.26 6.41 37.16 0.24 1.50 16 6 O -0.57 -8.43 13.41 -35.23 -0.47 -8.90 16 7 C 0.54 11.15 5.16 -10.98 -0.06 11.10 16 8 O -0.55 -11.70 13.00 5.56 0.07 -11.63 16 9 N -0.52 -11.49 2.68 -114.74 -0.31 -11.80 16 10 C 0.20 4.54 3.48 -5.19 -0.02 4.52 16 11 C -0.54 -14.05 9.93 -34.44 -0.34 -14.39 16 12 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 13 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 14 N -0.89 -25.31 13.96 55.43 0.77 -24.54 16 15 Si 0.86 19.74 27.47 -169.99 -4.67 15.07 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 19 C 0.17 3.70 6.49 -83.70 -0.54 3.15 16 20 C -0.18 -3.55 9.04 -39.39 -0.36 -3.91 16 21 C -0.11 -1.84 9.69 -39.61 -0.38 -2.23 16 22 C -0.13 -2.18 5.88 -104.59 -0.62 -2.79 16 23 C -0.10 -1.28 10.01 36.01 0.36 -0.92 16 24 C -0.10 -1.77 9.69 -39.61 -0.38 -2.16 16 25 C -0.14 -2.93 9.26 -39.40 -0.36 -3.29 16 26 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.07 1.04 7.84 -51.93 -0.41 0.64 16 30 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.38 3.50 9.12 45.56 0.42 3.91 16 34 H 0.04 0.92 5.10 -51.93 -0.26 0.66 16 35 H 0.05 1.01 5.27 -51.93 -0.27 0.73 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.18 3.74 4.56 -56.08 -0.26 3.49 16 38 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 41 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 42 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.13 2.68 6.05 -52.48 -0.32 2.36 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -30.85 347.12 -7.48 -38.33 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -5.58 Total: 11.86 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.53 Total: -13.63 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.47 Total: -36.34 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.40 Total: -20.53 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.67 Total: 15.07 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.85 -7.48 -38.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779754793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.081 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds